# STOCKHOLM 1.0
#=GF ID HgcF
#=GF AC RF00058
#=GF DE HgcF RNA (Pab35)
#=GF AU Bateman A; 0000-0002-6982-4660
#=GF GA 70.0
#=GF NC 36.0
#=GF TC 149.1
#=GF SE Bateman A
#=GF SS Predicted; PFOLD
#=GF TP Gene; snRNA; snoRNA; HACA-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 23.94 -Z 2958934 CM SEQDB
#=GF DR SO; 0000594; H_ACA_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF RN [1]
#=GF RM 12032319
#=GF RT Noncoding RNA genes identified in AT-rich hyperthermophiles.
#=GF RA Klein RJ, Misulovin Z, Eddy SR
#=GF RL Proc Natl Acad Sci U S A 2002;99:7542-7547.
#=GF RN [2]
#=GF RM 18304947
#=GF RT Combined in silico and experimental identification of the Pyrococcus
#=GF RT abyssi H/ACA sRNAs and their target sites in ribosomal RNAs.
#=GF RA Muller S, Leclerc F, Behm-Ansmant I, Fourmann JB, Charpentier B, Branlant
#=GF RA C
#=GF RL Nucleic Acids Res. 2008;36:2459-2475.
#=GF CC The HgcF ncRNA gene was identified computationally in AT-rich
#=GF CC hyperthermophiles. The genes were named hgcA through hgcG ("high GC"). It
#=GF CC was also identified as Pab35 H/ACA snoRNA with rRNA targets.[2] 
#=GF WK HgcF_RNA
#=GF SQ 4

AF468962.1/1-168           GCCGACAGCGAGGGUACAAUA----CCCUCGCAAGGGCUCGGUCAACCCGCCCCCGCAAGGU-UUCGGGUUCGAUGAGCGGGGUGUGCUCACGCCGAGCCUACAGGGCCGG-UGCAUCCGCCCGCGGGAUCAAUGACCGCUGGGUCUCUGUUGCCGGCCCACAAAAGUAUUUUA
AJ248284.1/11131-11298     GCCGACAGCGAGGGUACAAU-----CCCUCGCAGGGGCUCGGUCUACCCGCCCCCGCAAGGUGUUCGGGUUCGAUGAGCGGGGUGUGCUCACGCCGAGCCCACAGGGCCGG-UGCAUCCGCCCGCGGGAUCAAUGACCGCCGGGUCUCUGUUGCCGGCCUACAGCAAAAAUUUA
BA000001.2/1531413-1531580 GCCGACAGCGAGGGUACAAUA----CCCUCGCAAGGGCUCGGUCAACCCGCCCCCGCAAGGU-UUCGGGGUCGAUGAGCGGGGUGUGCUCACGCCGAGCCUACAGGGCCGG-UGCAUCCGCCCGCGGGAUUAAUGACCGCUGGGUCUCUGUUGCCGGCCCACAAUAAAGUUUAA
AP006878.1/1107433-1107263 GCCGACAGCGAGGGGACAGUCAGUCUCCUCGCA-GGGCUCGGUACAACCGCCUCCGCAAGGU-AUCGGGUUCCGUGAGCGGAGCGUGCUCACGCCGAGCCCACAGGGCCGGGAGCAUCCACCCGCGGGAGCAGUGACCGC-GGGCCUCUGUACCCGGCCCACAUUUCGAUGCCC
#=GC SS_cons               :::::::<<<<<<<_______....>>>>>>>::<<<<<<<<----<<<<<-<<<<______.__>>>>-------->>>>>----------->>>>>>>>:::<<<<<<<.--------<<<<<<<_________>>>>->>>--------->>>>>>>::::::::::::::
#=GC RF                    GCCGACAGCGaGGGuACAaUa....CCCuCGCAagGGCuCGGUcaAcCCGCCcCCGCAAGGU.uUCGGguUCgaUGAGCGGgGuGUGCUCACGCCGaGCCcACAGGGCCGG.uGCAUCCgCCCGCGGGAucAaUGACCGCuGGGuCUCUGUugCCGGCCCACAauaaaauuuua
//
