INFERNAL1/a [1.1.5 | Sep 2023] NAME RyhB ACC RF00057 DESC RyhB RNA STATES 210 NODES 60 CLEN 67 W 83 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 18:01:24 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00057/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 3.246826 CKSUM 1209860326 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 55.00 NC 54.70 EFP7GF -11.1269 0.71902 ECMLC 0.58853 -8.24497 1.56357 1600000 385661 0.003112 ECMGC 0.40288 -15.85425 -2.56180 1600000 84686 0.004723 ECMLI 0.54900 -6.47860 3.20527 1600000 244388 0.004910 ECMGI 0.43470 -11.32866 0.33736 1600000 63744 0.006275 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 83 105 -7.406 -7.613 -0.038 -6.028 IL 1 1 2 1 4 3 27 87 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 26 86 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 4 26 83 105 -8.394 -0.015 -7.049 -0.109 -1.095 0.449 0.310 D 4 2 3 5 3 1 22 82 104 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 26 85 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 4 25 82 104 -8.394 -0.015 -7.049 0.698 -1.013 -0.939 0.444 D 7 5 3 8 3 1 21 81 103 -6.174 -1.687 -0.566 IL 8 8 3 8 3 3 25 84 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 3 24 81 103 -8.394 -0.015 -7.049 0.572 -0.662 -0.504 0.234 D 10 8 3 11 3 1 20 80 102 -6.174 -1.687 -0.566 IL 11 11 3 11 3 2 24 83 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 3 24 80 102 -8.394 -0.015 -7.049 0.792 -1.822 0.648 -1.256 D 13 11 3 14 3 0 20 79 101 -6.174 -1.687 -0.566 IL 14 14 3 14 3 2 23 82 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 3 23 79 101 -8.394 -0.015 -7.049 -0.026 -2.144 1.298 -1.584 D 16 14 3 17 3 0 19 78 100 -6.174 -1.687 -0.566 IL 17 17 3 17 3 2 22 81 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 2 22 78 100 -8.760 -0.014 -7.078 -1.728 1.495 -2.598 -0.485 D 19 17 3 20 3 0 19 77 99 -5.620 -0.734 -1.403 IL 20 20 3 20 3 2 21 79 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 71 - U - - MR 21 20 3 23 3 2 21 77 99 -8.760 -0.014 -7.078 -0.391 -1.146 -1.302 1.251 D 22 20 3 23 3 0 17 75 98 -6.390 -1.568 -0.620 IR 23 23 3 23 3 2 20 78 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 70 - U - - MR 24 23 3 26 3 2 20 76 98 -8.760 -0.014 -7.078 -0.816 -0.990 -1.562 1.373 D 25 23 3 26 3 0 16 74 97 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 20 77 99 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 69 - U - - MR 27 26 3 29 3 2 19 75 97 -8.760 -0.014 -7.078 -0.122 -1.179 -1.584 1.206 D 28 26 3 29 3 0 16 73 96 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 19 76 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 68 - U - - MR 30 29 3 32 3 2 18 74 96 -8.760 -0.014 -7.078 -1.120 -1.522 -2.179 1.571 D 31 29 3 32 3 0 15 72 95 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 18 75 97 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 67 - U - - MR 33 32 3 35 3 2 17 73 95 -8.760 -0.014 -7.078 -0.552 -0.482 -1.017 1.076 D 34 32 3 35 3 0 15 71 94 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 17 74 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 66 - U - - MR 36 35 3 38 3 2 16 72 94 -8.760 -0.014 -7.078 -0.941 -0.383 -1.424 1.226 D 37 35 3 38 3 0 14 71 93 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 16 73 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 65 - U - - MR 39 38 3 41 2 1 15 71 93 -8.860 -0.003 -0.710 -0.267 -1.668 1.166 D 40 38 3 41 2 0 14 70 92 -4.432 -0.068 IR 41 41 3 41 2 1 15 72 94 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 42 41 3 43 123 0 14 70 92 [ BEGL 15 ] - - - - - - S 43 42 1 44 4 0 0 40 59 -0.037 -7.083 -6.491 -7.131 [ MATP 16 ] 7 32 A U - - MP 44 43 1 48 6 2 2 40 60 -9.300 -9.239 -0.018 -8.016 -8.296 -8.691 -4.618 -3.468 -4.541 3.683 -5.343 -6.514 -0.986 -4.525 -4.440 0.179 -5.026 -0.834 -1.396 -5.536 -2.922 -3.355 ML 45 43 1 48 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 1 48 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 1 48 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 8 31 C G - - MP 50 49 6 54 4 2 2 38 58 -7.290 -8.536 -0.060 -4.989 -5.054 -5.078 -4.646 -1.236 -3.223 -4.976 3.646 -4.085 -4.711 -1.072 -4.925 -3.090 0.258 -5.060 -0.350 -3.525 ML 51 49 6 54 4 1 1 38 57 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 4 1 1 37 57 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 53 49 6 54 4 0 0 35 55 -12.737 -14.007 -2.036 -0.404 IL 54 54 5 54 4 1 1 38 57 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 55 55 6 55 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 30 - A - - MR 56 55 6 58 3 1 1 36 56 -8.760 -0.014 -7.078 1.853 -3.239 -2.788 -2.871 D 57 55 6 58 3 0 0 35 54 -6.390 -1.568 -0.620 IR 58 58 3 58 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 29 - C - - MR 59 58 3 61 5 1 1 35 54 -7.475 -0.030 -7.291 -7.503 -8.395 -2.787 1.817 -3.605 -2.002 D 60 58 3 61 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 61 61 3 61 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 9 28 G C - - MP 62 61 3 66 6 2 2 34 53 -9.300 -9.239 -0.018 -8.016 -8.296 -8.691 -5.574 -3.501 -5.804 -0.384 -6.390 -5.003 -1.548 -6.069 -4.829 3.787 -5.116 -1.245 -1.915 -5.001 -3.639 -4.669 ML 63 61 3 66 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 3 66 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 3 66 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 10 27 A U - - MP 68 67 6 72 4 2 2 32 51 -7.406 -7.613 -0.038 -6.028 -4.358 -3.203 -4.374 3.598 -5.488 -6.380 -1.133 -4.449 -4.221 0.495 -4.827 0.005 -1.350 -5.255 -3.037 -3.164 ML 69 67 6 72 4 1 1 33 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 71 67 6 72 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 72 72 5 72 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 73 73 6 73 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 11 - C - - - ML 74 73 6 76 3 1 1 30 49 -8.394 -0.015 -7.049 -2.787 1.817 -3.605 -2.002 D 75 73 6 76 3 0 0 29 48 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 12 - A - - - ML 77 76 3 79 3 1 1 29 48 -8.394 -0.015 -7.049 1.853 -3.239 -2.788 -2.871 D 78 76 3 79 3 0 0 28 47 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 13 - U - - - ML 80 79 3 82 3 1 1 28 47 -8.394 -0.015 -7.049 -2.305 -2.164 -3.069 1.789 D 81 79 3 82 3 0 0 27 46 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 14 - U - - - ML 83 82 3 85 3 1 1 27 45 -8.760 -0.014 -7.078 -2.305 -2.164 -3.069 1.789 D 84 82 3 85 3 0 0 25 44 -5.620 -0.734 -1.403 IL 85 85 3 85 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 26 - U - - MR 86 85 3 88 5 1 1 26 44 -7.475 -0.030 -7.291 -7.503 -8.395 -2.305 -2.164 -3.069 1.789 D 87 85 3 88 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 88 88 3 88 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 15 25 G C - - MP 89 88 3 93 6 2 2 25 43 -9.300 -9.239 -0.018 -8.016 -8.296 -8.691 -5.574 -3.501 -5.804 -0.384 -6.390 -5.003 -1.548 -6.069 -4.829 3.787 -5.116 -1.245 -1.915 -5.001 -3.639 -4.669 ML 90 88 3 93 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 3 93 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 3 93 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 16 24 C G - - MP 95 94 6 99 4 2 2 23 41 -7.406 -7.613 -0.038 -6.028 -5.509 -5.495 -5.027 -1.668 -3.568 -5.311 3.764 -4.475 -5.125 -1.531 -5.265 -3.473 -0.173 -5.510 -1.316 -3.939 ML 96 94 6 99 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 17 - U - - - ML 101 100 6 103 3 1 1 20 38 -8.394 -0.015 -7.049 -2.305 -2.164 -3.069 1.789 D 102 100 6 103 3 0 0 19 38 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 18 - C - - - ML 104 103 3 106 3 1 1 18 37 -8.394 -0.015 -7.049 -2.787 1.817 -3.605 -2.002 D 105 103 3 106 3 0 0 18 37 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - A - - - ML 107 106 3 109 3 1 1 17 36 -8.394 -0.015 -7.049 1.853 -3.239 -2.788 -2.871 D 108 106 3 109 3 0 0 17 35 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 20 - C - - - ML 110 109 3 112 3 1 1 16 34 -8.394 -0.015 -7.049 -2.251 1.698 -3.095 -1.222 D 111 109 3 112 3 0 0 16 34 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 21 - A - - - ML 113 112 3 115 3 1 1 14 33 -8.394 -0.015 -7.049 1.853 -3.239 -2.788 -2.871 D 114 112 3 115 3 0 0 15 33 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - U - - - ML 116 115 3 118 3 1 1 13 31 -8.394 -0.015 -7.049 -2.305 -2.164 -3.069 1.789 D 117 115 3 118 3 0 0 13 32 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 23 - U - - - ML 119 118 3 121 2 1 1 1 1 * 0.000 -2.305 -2.164 -3.069 1.789 D 120 118 3 121 2 0 0 0 0 * 0.000 IL 121 121 3 121 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 122 121 3 -1 0 0 0 0 0 [ BEGR 37 ] - - - - - - S 123 42 1 124 3 0 0 44 66 -8.394 -0.015 -7.049 IL 124 124 2 124 3 1 1 46 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - a - - - ML 125 124 2 127 3 1 1 43 66 -8.394 -0.059 -4.764 0.533 -1.205 0.340 -0.229 D 126 124 2 127 3 0 0 42 64 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 45 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - U - - - ML 128 127 3 130 3 1 1 42 65 -8.352 -0.016 -7.006 -0.727 -1.345 -1.909 1.452 D 129 127 3 130 3 0 0 41 63 -6.622 -2.135 -0.392 IL 130 130 3 130 3 1 1 44 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - U - - - ML 131 130 3 133 3 1 1 41 64 -8.352 -0.047 -5.121 0.092 -1.093 -1.438 1.068 D 132 130 3 133 3 0 0 40 62 -6.622 -1.015 -1.014 IL 133 133 3 133 3 1 1 43 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - a - - - ML 134 133 3 136 3 1 1 40 63 -8.365 -0.074 -4.406 0.988 -1.128 -0.970 0.069 D 135 133 3 136 3 0 0 39 61 -6.500 -2.013 -0.432 IL 136 136 3 136 3 1 1 42 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - U - - - ML 137 136 3 139 3 1 1 39 62 -8.307 -0.137 -3.521 -0.376 -0.572 -1.156 1.076 D 138 136 3 139 3 0 0 38 60 -6.969 -1.621 -0.584 IL 139 139 3 139 3 1 1 41 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - U - - - ML 140 139 3 142 3 1 1 39 61 -8.221 -0.017 -6.875 -1.370 -0.928 -2.114 1.514 D 141 139 3 142 3 0 0 36 59 -7.442 -2.955 -0.209 IL 142 142 3 142 3 1 1 40 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - U - - - ML 143 142 3 145 3 1 1 37 60 -8.221 -0.264 -2.609 -1.973 -1.886 -2.727 1.733 D 144 142 3 145 3 0 0 36 58 -7.442 -2.955 -0.209 IL 145 145 3 145 3 1 1 39 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - u - - - ML 146 145 3 148 5 1 1 37 59 -4.907 -0.078 -6.921 -7.133 -8.024 0.439 -0.573 -1.016 0.564 D 147 145 3 148 5 0 0 35 58 -6.424 -0.243 -5.685 -4.060 -3.973 IL 148 148 3 148 5 1 1 37 59 -2.511 -0.456 -4.190 -6.022 -5.296 0.000 0.000 0.000 0.000 [ MATP 46 ] 42 64 g c - - MP 149 148 3 153 6 2 2 36 58 -9.300 -9.239 -0.018 -8.016 -8.296 -8.691 -2.577 -2.326 -2.687 1.777 -2.656 -3.482 1.235 -2.976 -2.792 2.047 -3.298 -0.061 1.095 -2.771 0.359 -1.261 ML 150 148 3 153 6 1 1 34 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 3 153 6 1 1 34 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 3 153 6 0 0 31 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 35 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 35 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 43 63 g c - - MP 155 154 6 159 6 2 2 34 56 -9.300 -9.239 -0.033 -6.217 -8.296 -8.691 -3.287 -2.420 -1.619 1.510 -3.674 -3.965 0.919 -3.711 -3.505 2.883 -3.896 -0.189 0.365 -3.236 -1.255 -2.281 ML 156 154 6 159 6 1 1 32 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 32 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 29 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 33 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 33 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 44 62 c g - - MP 161 160 6 165 6 2 2 32 54 -9.286 -9.225 -0.019 -8.002 -8.282 -8.677 -3.785 -3.405 -3.735 0.345 -2.942 -4.422 2.801 -3.524 -3.737 1.946 -4.170 -1.196 0.944 -3.926 -0.560 -2.581 ML 162 160 6 165 6 1 1 30 52 -6.446 -6.792 -1.062 -1.201 -6.642 -4.172 0.143 0.128 -0.533 0.152 MR 163 160 6 165 6 1 1 30 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 27 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 31 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 31 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 45 61 C G - - MP 167 166 6 171 6 2 2 30 52 -9.300 -9.239 -0.018 -8.016 -8.296 -8.691 -5.509 -5.495 -5.027 -1.668 -3.568 -5.311 3.764 -4.475 -5.125 -1.531 -5.265 -3.473 -0.173 -5.510 -1.316 -3.939 ML 168 166 6 171 6 1 1 28 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 28 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 26 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 29 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 29 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 46 60 a u - - MP 173 172 6 177 6 2 2 28 50 -9.300 -9.239 -0.018 -8.016 -8.296 -8.691 -2.920 -2.652 -3.013 2.033 -2.739 -3.834 1.642 -3.137 -3.064 1.544 -3.576 -0.372 1.623 -3.131 -0.500 -2.019 ML 174 172 6 177 6 1 1 27 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 6 1 1 26 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 6 177 6 0 0 24 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 27 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 27 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 47 59 g c - - MP 179 178 6 183 6 2 2 26 48 -9.300 -9.239 -0.103 -4.050 -8.296 -8.691 -3.445 -2.691 -3.422 1.102 -3.368 -4.130 1.310 -3.642 -3.580 2.700 -3.995 -0.450 1.384 -3.440 -0.929 -2.366 ML 180 178 6 183 6 1 1 26 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 6 1 1 25 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 182 178 6 183 6 0 0 24 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 183 183 5 183 6 1 1 25 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 184 184 6 184 5 1 1 25 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 48 58 c g - - MP 185 184 6 189 4 2 2 23 45 -7.217 -7.424 -0.044 -5.838 -3.638 -3.504 -3.597 0.294 -2.654 -4.275 2.835 -3.307 -3.580 0.918 -4.025 -1.396 1.844 -3.813 -0.293 -2.440 ML 186 184 6 189 4 1 1 26 48 -2.793 -4.654 -0.474 -3.383 -0.271 0.525 -0.998 0.300 MR 187 184 6 189 4 1 1 24 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 188 184 6 189 4 0 0 23 46 -4.568 -4.250 -2.265 -0.520 IL 189 189 5 189 4 1 1 27 49 -1.187 -3.016 -1.269 -5.501 0.000 0.000 0.000 0.000 IR 190 190 6 190 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 52 - U - - - ML 191 190 6 193 3 1 1 18 37 -8.394 -0.015 -7.049 -0.375 -0.262 -1.487 1.027 D 192 190 6 193 3 0 0 18 36 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 53 - u - - - ML 194 193 3 196 3 1 1 17 36 -8.394 -0.015 -7.049 -0.278 -0.115 -0.702 0.711 D 195 193 3 196 3 0 0 17 35 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - g - - - ML 197 196 3 199 3 1 1 16 34 -8.394 -0.163 -3.269 -0.153 -0.955 0.732 -0.114 D 198 196 3 199 3 0 0 16 34 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - g - - - ML 200 199 3 202 3 1 1 15 33 -8.249 -0.420 -2.003 -0.214 -0.905 0.770 -0.154 D 201 199 3 202 3 0 0 14 32 -7.311 -2.824 -0.230 IL 202 202 3 202 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - g - - - ML 203 202 3 205 3 1 1 13 32 -7.850 -0.022 -6.504 -0.431 -1.154 0.883 -0.052 D 204 202 3 205 3 0 0 12 30 -8.471 -0.218 -2.863 IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - U - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 -1.611 -1.052 -2.358 1.583 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME RyhB ACC RF00057 DESC RyhB RNA LENG 67 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 18:01:25 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00057/CM NSEQ 26 EFFN 4.738525 CKSUM 1209860326 STATS LOCAL MSV -7.7575 0.71902 STATS LOCAL VITERBI -8.9051 0.71902 STATS LOCAL FORWARD -3.6175 0.71902 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55791 1.42293 1.56864 1.07855 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 0.00000 * 1 1.51869 2.28472 1.00257 1.16391 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 2 0.85680 2.22228 2.11872 1.05862 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 3 0.96183 1.89390 1.75229 1.22436 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 4 0.78711 2.96488 0.87045 2.59679 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 5 1.44031 3.17699 0.41324 2.81455 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 6 2.95582 0.27085 3.57907 1.84941 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 7 0.11859 3.91387 2.67060 3.78746 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 8 3.76361 0.16822 3.60020 2.26034 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 9 3.16629 4.07599 0.08019 4.02137 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 10 0.17013 3.99261 2.17432 3.71709 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 11 3.86664 0.07497 4.38561 3.24823 11 C - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 12 0.06153 4.11464 3.76587 3.90217 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 13 3.45555 3.28648 3.99566 0.09140 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 14 3.45555 3.28648 3.99566 0.09140 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 15 3.17930 4.09616 0.07871 4.04871 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 16 4.15382 0.09325 4.02501 2.89198 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 17 3.45555 3.28648 3.99566 0.09140 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 18 3.86664 0.07497 4.38561 3.24823 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 19 0.06153 4.11464 3.76587 3.90217 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 20 3.40407 0.14431 3.97273 2.49709 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 21 0.06153 4.11464 3.76587 3.90217 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 22 3.45555 3.28648 3.99566 0.09140 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 23 3.45555 3.28648 3.99566 0.09140 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 24 3.17990 4.19466 0.07917 3.93998 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 25 4.22651 0.09489 3.97017 2.86383 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 26 3.45555 3.28648 3.99566 0.09140 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 27 3.92214 2.78463 3.78720 0.11005 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 28 4.21147 0.09545 3.96258 2.86120 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 29 3.86664 0.07497 4.38562 3.24823 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 30 0.06153 4.11464 3.76587 3.90217 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 31 2.74347 3.73983 0.12561 3.50877 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 32 3.95092 3.04890 3.68977 0.09610 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 33 0.99704 2.36520 1.09379 1.59872 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.06020 4.37708 3.08204 1.46634 0.26236 1.09861 0.40547 34 2.03145 2.58007 3.01199 0.29586 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.02633 4.34321 4.34321 1.46634 0.26236 1.73186 0.19475 35 1.33527 2.33698 2.58148 0.57158 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.05125 4.34321 3.29769 1.46634 0.26236 0.43682 1.03871 36 0.64071 2.31543 2.15613 1.35253 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.07340 4.35363 2.84883 1.46634 0.26236 1.57792 0.23118 37 1.72283 1.84162 2.28117 0.57854 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.12536 4.30753 2.26000 1.46634 0.26236 1.07652 0.41670 38 2.65524 2.16366 3.17500 0.25745 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.02926 4.23921 4.23921 1.46634 0.26236 2.58415 0.07846 39 3.20881 3.07556 3.74410 0.11679 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.23449 4.23921 1.63676 1.46634 0.26236 2.58415 0.07846 40 1.05434 1.83354 2.18238 0.97033 40 u - - - 1.38629 1.38629 1.38629 1.38629 0.07345 2.93322 4.04053 0.56620 0.83859 0.08086 2.55524 41 1.33026 1.89371 1.08428 1.39863 42 g - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 42 1.50884 2.14213 0.58510 2.25971 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 43 2.56577 0.69204 1.29391 1.90792 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 44 4.03415 0.09840 3.95431 2.86751 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 45 1.17270 1.56570 1.51541 1.34013 46 a - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 46 1.89908 1.86951 0.72033 1.56301 47 g - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 47 2.43998 0.71359 2.00715 1.24276 48 c - - < 1.38629 1.38629 1.38629 1.38629 0.06072 3.07157 4.37708 1.17656 0.36866 1.09861 0.40547 48 1.72173 1.57434 2.59257 0.61753 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 49 1.64122 1.44850 1.88871 0.86734 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 50 1.56686 2.14182 0.78828 1.51763 54 g - - _ 1.38629 1.38629 1.38629 1.38629 0.14465 4.37708 2.10280 1.46634 0.26236 1.09861 0.40547 51 1.62747 2.10022 0.75309 1.55953 55 g - - _ 1.38629 1.38629 1.38629 1.38629 0.36676 4.26105 1.22787 1.46634 0.26236 2.46137 0.08918 52 1.83416 2.34901 0.66208 1.47399 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03991 3.93420 3.93420 1.46634 0.26236 0.06563 2.75633 53 2.84757 2.25007 3.36736 0.22047 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.17189 4.37708 1.92848 1.46634 0.26236 1.09861 0.40547 54 1.39866 2.11733 0.63397 2.28047 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.02940 4.23458 4.23458 1.46634 0.26236 0.15942 1.91487 55 1.70800 0.79121 1.72582 1.67425 59 c - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 56 1.49370 1.70557 1.41755 1.04559 60 u - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 57 3.14855 4.14099 0.08277 3.88177 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04882 4.37708 3.35001 1.46634 0.26236 1.09861 0.40547 58 2.16204 1.35327 0.63559 2.33412 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.02604 4.35430 4.35430 1.46634 0.26236 0.54006 0.87398 59 2.50095 0.66128 1.86700 1.39748 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 60 1.87269 1.24544 1.46660 1.11545 64 u - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 61 2.02946 1.58311 2.76670 0.51018 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 62 2.26973 1.68342 2.52338 0.46087 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 63 1.88454 1.75984 2.15280 0.58005 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 64 2.36630 2.72399 3.22842 0.22197 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 65 1.51250 2.42428 2.71894 0.46976 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 66 2.12576 2.22844 2.65353 0.35303 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 67 1.74268 2.38402 2.42846 0.43913 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.01280 4.36444 * 1.46634 0.26236 0.00000 * //