INFERNAL1/a [1.1.4 | Dec 2020] NAME RyhB ACC RF00057 DESC RyhB RNA STATES 210 NODES 60 CLEN 67 W 85 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:13:06 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 3.240479 CKSUM 1209860326 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 55.20 NC 54.80 EFP7GF -11.1487 0.71901 ECMLC 0.58452 -8.34113 1.53813 1600000 386423 0.003105 ECMGC 0.40924 -15.59982 -2.51571 1600000 84632 0.004726 ECMLI 0.54406 -6.58276 3.18912 1600000 244407 0.004910 ECMGI 0.43696 -11.23721 0.36630 1600000 63689 0.006281 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 85 110 -7.405 -7.612 -0.039 -6.026 IL 1 1 2 1 4 3 27 88 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 27 87 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 4 26 85 110 -8.393 -0.015 -7.047 -0.123 -1.082 0.412 0.356 D 4 2 3 5 3 1 22 83 109 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 26 86 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - a - - - ML 6 5 3 8 3 4 25 84 109 -8.393 -0.015 -7.047 0.667 -1.006 -0.951 0.482 D 7 5 3 8 3 1 21 82 108 -6.174 -1.687 -0.566 IL 8 8 3 8 3 3 25 85 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - a - - - ML 9 8 3 11 3 3 24 83 108 -8.393 -0.015 -7.047 0.550 -0.554 -0.531 0.217 D 10 8 3 11 3 1 20 81 107 -6.174 -1.687 -0.566 IL 11 11 3 11 3 2 24 84 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - a - - - ML 12 11 3 14 3 3 24 82 107 -8.393 -0.015 -7.047 0.762 -1.825 0.682 -1.258 D 13 11 3 14 3 0 20 80 106 -6.174 -1.687 -0.566 IL 14 14 3 14 3 2 23 83 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - G - - - ML 15 14 3 17 3 3 23 81 106 -8.393 -0.015 -7.047 -0.086 -2.175 1.328 -1.616 D 16 14 3 17 3 0 19 79 105 -6.174 -1.687 -0.566 IL 17 17 3 17 3 2 23 82 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - C - - - ML 18 17 3 20 3 3 22 80 105 -8.759 -0.014 -7.076 -1.592 1.417 -2.464 -0.292 D 19 17 3 20 3 0 19 78 104 -5.620 -0.734 -1.403 IL 20 20 3 20 3 2 21 80 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 71 - U - - MR 21 20 3 23 3 2 21 79 104 -8.759 -0.014 -7.076 -0.432 -1.160 -1.338 1.272 D 22 20 3 23 3 0 17 77 102 -6.390 -1.568 -0.620 IR 23 23 3 23 3 2 21 79 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 70 - U - - MR 24 23 3 26 3 2 20 78 103 -8.759 -0.014 -7.076 -0.845 -1.012 -1.591 1.387 D 25 23 3 26 3 0 16 76 101 -6.390 -1.568 -0.620 IR 26 26 3 26 3 2 20 78 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 69 - U - - MR 27 26 3 29 3 2 19 77 102 -8.759 -0.014 -7.076 -0.171 -1.193 -1.611 1.231 D 28 26 3 29 3 0 16 75 100 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 19 77 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 68 - U - - MR 30 29 3 32 3 2 18 76 101 -8.759 -0.014 -7.076 -1.146 -1.531 -2.193 1.577 D 31 29 3 32 3 0 15 74 99 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 18 76 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 67 - U - - MR 33 32 3 35 3 2 17 75 100 -8.759 -0.014 -7.076 -0.584 -0.515 -1.057 1.106 D 34 32 3 35 3 0 15 73 99 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 17 75 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 66 - U - - MR 36 35 3 38 3 2 16 74 99 -8.759 -0.014 -7.076 -0.944 -0.371 -1.440 1.226 D 37 35 3 38 3 0 14 72 98 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 16 74 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 65 - U - - MR 39 38 3 41 2 1 15 73 98 -8.858 -0.003 -0.740 -0.312 -1.690 1.193 D 40 38 3 41 2 0 14 72 97 -4.432 -0.068 IR 41 41 3 41 2 1 15 73 99 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 14 ] - - - - - - B 42 41 3 43 123 0 14 72 97 [ BEGL 15 ] - - - - - - S 43 42 1 44 4 0 0 40 59 -0.037 -7.082 -6.489 -7.129 [ MATP 16 ] 7 32 A U - - MP 44 43 1 48 6 2 2 40 60 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -4.614 -3.465 -4.538 3.682 -5.337 -6.508 -0.981 -4.522 -4.437 0.183 -5.022 -0.832 -1.391 -5.531 -2.917 -3.352 ML 45 43 1 48 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 46 43 1 48 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 47 43 1 48 6 0 0 37 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 48 48 5 48 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 49 49 6 49 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 8 31 C G - - MP 50 49 6 54 4 2 2 38 58 -7.289 -8.534 -0.060 -4.988 -5.070 -5.094 -4.660 -1.253 -3.235 -4.987 3.651 -4.099 -4.726 -1.089 -4.937 -3.107 0.243 -5.076 -0.388 -3.540 ML 51 49 6 54 4 1 1 38 57 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 52 49 6 54 4 1 1 37 57 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 53 49 6 54 4 0 0 35 55 -12.737 -14.007 -2.036 -0.404 IL 54 54 5 54 4 1 1 38 57 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 55 55 6 55 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 30 - A - - MR 56 55 6 58 3 1 1 36 56 -8.759 -0.014 -7.076 1.853 -3.235 -2.785 -2.867 D 57 55 6 58 3 0 0 35 54 -6.390 -1.568 -0.620 IR 58 58 3 58 3 1 1 37 56 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 29 - C - - MR 59 58 3 61 5 1 1 35 54 -7.474 -0.030 -7.289 -7.501 -8.393 -2.783 1.816 -3.601 -1.999 D 60 58 3 61 5 0 0 34 53 -5.352 -0.707 -2.978 -4.409 -2.404 IR 61 61 3 61 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 9 28 G C - - MP 62 61 3 66 6 2 2 34 53 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -5.571 -3.499 -5.800 -0.381 -6.386 -5.002 -1.544 -6.065 -4.827 3.787 -5.114 -1.243 -1.911 -4.999 -3.635 -4.665 ML 63 61 3 66 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 3 66 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 3 66 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 10 27 A U - - MP 68 67 6 72 4 2 2 32 51 -7.405 -7.612 -0.039 -6.026 -4.366 -3.211 -4.379 3.602 -5.494 -6.390 -1.137 -4.452 -4.229 0.485 -4.835 -0.029 -1.357 -5.265 -3.043 -3.171 ML 69 67 6 72 4 1 1 33 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 4 1 1 33 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 71 67 6 72 4 0 0 32 51 -4.568 -4.250 -2.265 -0.520 IL 72 72 5 72 4 1 1 35 54 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 73 73 6 73 3 1 1 33 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 11 - C - - - ML 74 73 6 76 3 1 1 30 49 -8.393 -0.015 -7.047 -2.783 1.816 -3.601 -1.999 D 75 73 6 76 3 0 0 29 48 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 12 - A - - - ML 77 76 3 79 3 1 1 29 48 -8.393 -0.015 -7.047 1.853 -3.235 -2.785 -2.867 D 78 76 3 79 3 0 0 28 47 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 13 - U - - - ML 80 79 3 82 3 1 1 28 47 -8.393 -0.015 -7.047 -2.302 -2.161 -3.066 1.788 D 81 79 3 82 3 0 0 27 46 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 14 - U - - - ML 83 82 3 85 3 1 1 27 45 -8.759 -0.014 -7.076 -2.302 -2.161 -3.066 1.788 D 84 82 3 85 3 0 0 25 44 -5.620 -0.734 -1.403 IL 85 85 3 85 3 1 1 27 46 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 26 - U - - MR 86 85 3 88 5 1 1 26 44 -7.474 -0.030 -7.289 -7.501 -8.393 -2.302 -2.161 -3.066 1.788 D 87 85 3 88 5 0 0 24 43 -5.352 -0.707 -2.978 -4.409 -2.404 IR 88 88 3 88 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 15 25 G C - - MP 89 88 3 93 6 2 2 25 43 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -5.571 -3.499 -5.800 -0.381 -6.386 -5.002 -1.544 -6.065 -4.827 3.787 -5.114 -1.243 -1.911 -4.999 -3.635 -4.665 ML 90 88 3 93 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 3 93 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 3 93 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 16 24 C G - - MP 95 94 6 99 4 2 2 23 41 -7.405 -7.612 -0.039 -6.026 -5.505 -5.490 -5.023 -1.664 -3.566 -5.308 3.764 -4.472 -5.122 -1.526 -5.262 -3.469 -0.170 -5.506 -1.313 -3.936 ML 96 94 6 99 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 17 - U - - - ML 101 100 6 103 3 1 1 20 38 -8.393 -0.015 -7.047 -2.302 -2.161 -3.066 1.788 D 102 100 6 103 3 0 0 19 38 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 18 - C - - - ML 104 103 3 106 3 1 1 18 37 -8.393 -0.015 -7.047 -2.783 1.816 -3.601 -1.999 D 105 103 3 106 3 0 0 18 37 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 19 - A - - - ML 107 106 3 109 3 1 1 17 36 -8.393 -0.015 -7.047 1.853 -3.235 -2.785 -2.867 D 108 106 3 109 3 0 0 17 35 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 20 - C - - - ML 110 109 3 112 3 1 1 16 34 -8.393 -0.015 -7.047 -2.268 1.703 -3.111 -1.249 D 111 109 3 112 3 0 0 16 34 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 21 - A - - - ML 113 112 3 115 3 1 1 14 33 -8.393 -0.015 -7.047 1.853 -3.235 -2.785 -2.867 D 114 112 3 115 3 0 0 15 33 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 22 - U - - - ML 116 115 3 118 3 1 1 13 31 -8.393 -0.015 -7.047 -2.302 -2.161 -3.066 1.788 D 117 115 3 118 3 0 0 13 32 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 23 - U - - - ML 119 118 3 121 2 1 1 1 1 * 0.000 -2.302 -2.161 -3.066 1.788 D 120 118 3 121 2 0 0 0 0 * 0.000 IL 121 121 3 121 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 122 121 3 -1 0 0 0 0 0 [ BEGR 37 ] - - - - - - S 123 42 1 124 3 0 0 45 71 -8.393 -0.015 -7.047 IL 124 124 2 124 3 1 1 48 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 33 - a - - - ML 125 124 2 127 3 1 1 45 71 -8.393 -0.056 -4.826 0.568 -1.213 0.319 -0.253 D 126 124 2 127 3 0 0 44 69 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 47 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 34 - U - - - ML 128 127 3 130 3 1 1 44 70 -8.352 -0.016 -7.006 -0.763 -1.358 -1.932 1.464 D 129 127 3 130 3 0 0 42 68 -6.601 -2.114 -0.398 IL 130 130 3 130 3 1 1 46 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 35 - U - - - ML 131 130 3 133 3 1 1 43 69 -8.352 -0.045 -5.179 0.038 -1.106 -1.466 1.102 D 132 130 3 133 3 0 0 42 68 -6.601 -1.037 -0.993 IL 133 133 3 133 3 1 1 45 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 36 - a - - - ML 134 133 3 136 3 1 1 42 68 -8.365 -0.071 -4.473 0.996 -1.133 -0.986 0.063 D 135 133 3 136 3 0 0 40 66 -6.484 -1.997 -0.438 IL 136 136 3 136 3 1 1 44 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 37 - U - - - ML 137 136 3 139 3 1 1 41 67 -8.310 -0.130 -3.596 -0.356 -0.594 -1.167 1.078 D 138 136 3 139 3 0 0 40 65 -6.936 -1.623 -0.584 IL 139 139 3 139 3 1 1 43 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - U - - - ML 140 139 3 142 3 1 1 40 66 -8.229 -0.017 -6.883 -1.347 -0.865 -2.092 1.497 D 141 139 3 142 3 0 0 38 64 -7.396 -2.909 -0.216 IL 142 142 3 142 3 1 1 42 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - U - - - ML 143 142 3 145 3 1 1 39 65 -8.229 -0.296 -2.456 -1.988 -1.898 -2.743 1.736 D 144 142 3 145 3 0 0 38 63 -7.396 -2.909 -0.216 IL 145 145 3 145 3 1 1 41 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - u - - - ML 146 145 3 148 5 1 1 39 64 -4.562 -0.092 -6.900 -7.112 -8.003 0.417 -0.571 -1.010 0.581 D 147 145 3 148 5 0 0 37 63 -6.464 -0.235 -5.725 -4.100 -4.013 IL 148 148 3 148 5 1 1 39 65 -2.543 -0.445 -4.222 -6.054 -5.327 0.000 0.000 0.000 0.000 [ MATP 46 ] 42 64 g c - - MP 149 148 3 153 6 2 2 38 63 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -2.630 -2.337 -2.730 1.773 -2.719 -3.520 1.201 -3.026 -2.843 2.123 -3.343 -0.061 1.056 -2.808 0.303 -1.308 ML 150 148 3 153 6 1 1 36 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 3 153 6 1 1 36 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 3 153 6 0 0 33 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 37 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 37 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 43 63 g c - - MP 155 154 6 159 6 2 2 36 61 -9.299 -9.238 -0.032 -6.272 -8.295 -8.690 -3.237 -2.422 -1.670 1.481 -3.571 -3.933 1.062 -3.650 -3.453 2.839 -3.854 -0.209 0.429 -3.206 -1.183 -2.247 ML 156 154 6 159 6 1 1 34 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 34 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 31 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 35 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 35 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 44 62 c g - - MP 161 160 6 165 6 2 2 34 59 -9.286 -9.225 -0.019 -8.002 -8.282 -8.677 -3.798 -3.434 -3.745 0.324 -2.930 -4.430 2.836 -3.520 -3.743 1.887 -4.176 -1.227 0.951 -3.943 -0.549 -2.588 ML 162 160 6 165 6 1 1 32 58 -6.436 -6.782 -1.073 -1.191 -6.632 -4.162 0.153 0.111 -0.522 0.153 MR 163 160 6 165 6 1 1 32 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 29 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 33 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 33 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 45 61 C G - - MP 167 166 6 171 6 2 2 32 57 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -5.505 -5.490 -5.023 -1.664 -3.566 -5.308 3.764 -4.472 -5.122 -1.526 -5.262 -3.469 -0.170 -5.506 -1.313 -3.936 ML 168 166 6 171 6 1 1 30 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 30 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 28 53 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 31 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 31 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 46 60 a u - - MP 173 172 6 177 6 2 2 30 55 -9.299 -9.238 -0.018 -8.015 -8.295 -8.690 -2.931 -2.624 -3.018 2.005 -2.781 -3.832 1.593 -3.163 -3.081 1.691 -3.587 -0.353 1.567 -3.125 -0.537 -2.026 ML 174 172 6 177 6 1 1 29 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 6 1 1 28 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 6 177 6 0 0 26 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 29 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 29 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 47 59 g c - - MP 179 178 6 183 6 2 2 28 53 -9.299 -9.238 -0.117 -3.852 -8.295 -8.690 -3.417 -2.711 -3.402 1.080 -3.288 -4.119 1.444 -3.593 -3.548 2.643 -3.971 -0.482 1.394 -3.430 -0.862 -2.343 ML 180 178 6 183 6 1 1 29 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 6 1 1 27 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 182 178 6 183 6 0 0 26 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 183 183 5 183 6 1 1 27 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 184 184 6 184 5 1 1 26 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 48 58 c g - - MP 185 184 6 189 4 2 2 25 50 -7.183 -7.390 -0.045 -5.804 -3.619 -3.484 -3.576 0.306 -2.636 -4.252 2.833 -3.290 -3.561 0.921 -4.006 -1.381 1.832 -3.793 -0.278 -2.424 ML 186 184 6 189 4 1 1 28 54 -2.263 -4.739 -0.591 -3.469 -0.340 0.645 -1.077 0.228 MR 187 184 6 189 4 1 1 26 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 188 184 6 189 4 0 0 25 51 -4.568 -4.250 -2.265 -0.520 IL 189 189 5 189 4 1 1 30 55 -1.032 -3.371 -1.332 -5.856 0.000 0.000 0.000 0.000 IR 190 190 6 190 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 52 - u - - - ML 191 190 6 193 3 1 1 18 37 -8.393 -0.015 -7.047 -0.376 -0.127 -1.472 0.965 D 192 190 6 193 3 0 0 18 37 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 53 - u - - - ML 194 193 3 196 3 1 1 17 36 -8.393 -0.015 -7.047 -0.250 -0.049 -0.720 0.665 D 195 193 3 196 3 0 0 17 35 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 54 - g - - - ML 197 196 3 199 3 1 1 16 34 -8.393 -0.155 -3.341 -0.142 -0.979 0.752 -0.147 D 198 196 3 199 3 0 0 16 34 -6.174 -1.687 -0.566 IL 199 199 3 199 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - g - - - ML 200 199 3 202 3 1 1 15 33 -8.255 -0.411 -2.030 -0.114 -0.907 0.722 -0.163 D 201 199 3 202 3 0 0 14 32 -7.268 -2.781 -0.238 IL 202 202 3 202 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - g - - - ML 203 202 3 205 3 1 1 13 32 -7.866 -0.022 -6.520 -0.467 -1.208 0.945 -0.123 D 204 202 3 205 3 0 0 12 30 -8.440 -0.223 -2.831 IL 205 205 3 205 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - U - - - ML 206 205 3 208 2 1 1 1 1 * 0.000 -1.624 -1.082 -2.371 1.590 D 207 205 3 208 2 0 0 0 0 * 0.000 IL 208 208 3 208 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 209 208 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME RyhB ACC RF00057 DESC RyhB RNA LENG 67 MAXL 143 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:13:06 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 26 EFFN 4.732178 CKSUM 1209860326 STATS LOCAL MSV -7.6354 0.71901 STATS LOCAL VITERBI -8.9206 0.71901 STATS LOCAL FORWARD -3.6066 0.71901 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.56302 1.42134 1.56749 1.07722 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 0.00000 * 1 1.53027 2.27457 1.02999 1.12803 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 2 0.88012 2.21724 2.12836 1.02911 2 a - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 3 0.97823 1.80297 1.77339 1.23975 3 a - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 4 0.81024 2.96599 0.84571 2.59712 4 a - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 5 1.48875 3.20026 0.39294 2.83837 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 6 2.83858 0.32149 3.47008 1.68574 6 C - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 7 0.11883 3.91166 2.66888 3.78540 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 8 3.77920 0.16426 3.61685 2.28503 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 9 3.16508 4.07439 0.08031 4.01971 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 10 0.16684 4.00029 2.19591 3.72581 10 A - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 11 3.86478 0.07510 4.38399 3.24656 11 C - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 12 0.06164 4.11292 3.76425 3.90033 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 13 3.45386 3.28503 3.99394 0.09156 13 U - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 14 3.45386 3.28503 3.99394 0.09156 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 15 3.17808 4.09454 0.07883 4.04702 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 16 4.15186 0.09343 4.02286 2.89025 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 17 3.45386 3.28503 3.99394 0.09156 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 18 3.86478 0.07510 4.38399 3.24656 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 19 0.06164 4.11292 3.76425 3.90033 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 20 3.41985 0.14101 3.98614 2.52280 20 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 21 0.06164 4.11292 3.76425 3.90033 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 22 3.45386 3.28503 3.99394 0.09156 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 23 3.45386 3.28503 3.99394 0.09156 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 24 3.17818 4.19253 0.07932 3.93794 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 25 4.22493 0.09502 3.96847 2.86265 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 26 3.45386 3.28503 3.99394 0.09156 26 U - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 27 3.93115 2.79592 3.79539 0.10887 27 U - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 28 4.20991 0.09559 3.96089 2.86002 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 29 3.86478 0.07510 4.38399 3.24656 29 C - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 30 0.06164 4.11292 3.76425 3.90033 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 31 2.75845 3.75614 0.12355 3.52471 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 32 3.94896 3.04705 3.68762 0.09630 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 33 0.96985 2.37250 1.11010 1.61904 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.05837 4.37708 3.12052 1.46634 0.26236 1.09861 0.40547 34 2.06359 2.59194 3.03146 0.28784 34 U - - - 1.38629 1.38629 1.38629 1.38629 0.02629 4.34500 4.34500 1.46634 0.26236 1.70716 0.20014 35 1.37987 2.35140 2.60822 0.54561 35 U - - - 1.38629 1.38629 1.38629 1.38629 0.04985 4.34500 3.33378 1.46634 0.26236 0.45061 1.01401 36 0.63437 2.32031 2.17058 1.35722 36 A - - - 1.38629 1.38629 1.38629 1.38629 0.07079 4.35486 2.89136 1.46634 0.26236 1.55792 0.23645 37 1.70512 1.86136 2.29137 0.57686 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.11954 4.31127 2.31008 1.46634 0.26236 1.07694 0.41648 38 2.63659 2.10760 3.15726 0.26876 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.02904 4.24687 4.24687 1.46634 0.26236 2.54309 0.08189 39 3.22116 3.08603 3.75671 0.11536 39 U - - - 1.38629 1.38629 1.38629 1.38629 0.26144 4.24687 1.53363 1.46634 0.26236 2.54309 0.08189 40 1.07204 1.83204 2.17734 0.95643 40 u - - - 1.38629 1.38629 1.38629 1.38629 0.08768 2.71765 4.02192 0.47551 0.97173 0.07757 2.59514 41 1.33707 1.92854 1.03698 1.43759 42 g - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 42 1.53001 2.02689 0.61105 2.21693 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 43 2.58365 0.66749 1.33640 1.90569 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 44 4.03425 0.09850 3.95343 2.86622 45 C - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 45 1.19341 1.60401 1.41023 1.37976 46 a - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 46 1.91635 1.75574 0.75959 1.55014 47 g - - < 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 47 2.42830 0.70865 2.01226 1.25240 48 c - - < 1.38629 1.38629 1.38629 1.38629 0.08903 2.62255 4.37708 1.14698 0.38213 1.09861 0.40547 48 1.72389 1.46051 2.57956 0.66611 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 49 1.61747 1.39589 1.90442 0.90368 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 50 1.55857 2.16245 0.77376 1.54531 54 g - - _ 1.38629 1.38629 1.38629 1.38629 0.13809 4.37708 2.15057 1.46634 0.26236 1.09861 0.40547 51 1.53857 2.10001 0.79065 1.56395 55 g - - _ 1.38629 1.38629 1.38629 1.38629 0.35865 4.26742 1.24701 1.46634 0.26236 2.42191 0.09294 52 1.87029 2.39849 0.61685 1.53515 56 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03935 3.94812 3.94812 1.46634 0.26236 0.06721 2.73330 53 2.85822 2.27664 3.37768 0.21583 57 U - - _ 1.38629 1.38629 1.38629 1.38629 0.19730 4.37708 1.79282 1.46634 0.26236 1.09861 0.40547 54 1.40567 2.11563 0.63353 2.26792 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03014 4.20993 4.20993 1.46634 0.26236 0.14055 2.03166 55 1.70008 0.83152 1.62024 1.69233 59 c - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 56 1.53648 1.58082 1.45408 1.06293 60 u - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 57 3.14633 4.13805 0.08299 3.87885 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.04759 4.37708 3.38396 1.46634 0.26236 1.09861 0.40547 58 2.15953 1.39760 0.61203 2.35195 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.02601 4.35549 4.35549 1.46634 0.26236 0.55437 0.85434 59 2.45650 0.68816 1.78021 1.41401 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 60 1.90995 1.19001 1.50392 1.12259 64 u - - > 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 61 2.05720 1.62161 2.78734 0.48935 65 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 62 2.27304 1.67354 2.53898 0.46129 66 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 63 1.91503 1.79023 2.18814 0.55580 67 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 64 2.38882 2.73090 3.23945 0.21826 68 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 65 1.55366 2.43811 2.74439 0.45112 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 66 2.15400 2.25003 2.68121 0.34234 70 U - - : 1.38629 1.38629 1.38629 1.38629 0.02545 4.37708 4.37708 1.46634 0.26236 1.09861 0.40547 67 1.77935 2.39893 2.46169 0.42290 71 U - - : 1.38629 1.38629 1.38629 1.38629 0.01280 4.36443 * 1.46634 0.26236 0.00000 * //