# STOCKHOLM 1.0
#=GF ID SNORD96
#=GF AC RF00055
#=GF DE Small nucleolar RNA SNORD96 family
#=GF AU Daub J; 0000-0001-6022-563X
#=GF GA 43.0
#=GF NC 42.9
#=GF TC 43.0
#=GF PI snoZ37
#=GF SE Griffiths-Jones SR, Daub J
#=GF SS Predicted; PFOLD
#=GF TP Gene; snRNA; snoRNA; CD-box;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 24.00 -Z 2958934 CM SEQDB
#=GF CL CL00072
#=GF DR snoRNABase; U96a;
#=GF DR snoRNABase; U96b;
#=GF DR SO; 0000593; C_D_box_snoRNA;
#=GF DR GO; 0006396; RNA processing;
#=GF DR GO; 0005730; nucleolus;
#=GF DR snoopy; Arabidopsis_thaliana300073;
#=GF DR snoopy; Homo_sapiens300641;
#=GF RN [1]
#=GF RM 12523999
#=GF RT Plant snoRNAs: functional evolution and new modes of gene expression.
#=GF RA Brown JW, Echeverria M, Qu LH
#=GF RL Trends Plant Sci 2003;8:42-49.
#=GF RN [2]
#=GF RM 11266566
#=GF RT Identification of 10 novel snoRNA gene clusters from Arabidopsis thaliana.
#=GF RA Qu LH, Meng Q, Zhou H, Chen YQ, Liang-Hu Q, Qing M, Hui Z, Yue-Qin C
#=GF RL Nucleic Acids Res 2001;29:1623-1630.
#=GF RN [3]
#=GF RM 16381836
#=GF RT snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box
#=GF RT snoRNAs.
#=GF RA Lestrade L, Weber MJ
#=GF RL Nucleic Acids Res. 2006;34:D158-D162.
#=GF CC snoRNA Z37 is a member of the C/D class of snoRNA which contain the C
#=GF CC (UGAUGA) and D (CUGA) box motifs. Z37 acts as a methylation guide for 5.8S
#=GF CC ribosomal RNA. This family contains a putative snoRNA found in the intron
#=GF CC of the receptor for activated C kinase (RACK1) gene in mammals (S.
#=GF CC Griffiths-Jones, pers. obs.). This family also includes human snoRNAs U96a
#=GF CC (SNORD96A) and U96b (SNORD96B) and the apicomplexan snoRNA snr39b.
#=GF WK Small_nucleolar_RNA_Z37
#=GF SQ 9

AJ132685.1/1-77      -AUCCUAGUGAUGACAAGACGAC-AUUGUCAA-C-CAAUCCCCCACAAGGGAAUGAG-------------GACAUG-------UCCUGCA-AUUCUGAAUGG---
AF295529.1/5361-5441 GAUCCUAGUGAUGACAAGACGAC-AUUGUCAA-C-CAAUCCCCCACAAGGGAAUGAG-------------GACAUG-------UCCUGCA-AUUCUGAAUGGGUU
AF146043.1/3911-3989 GAUCCUGGUGAUGACCA-AUGAC-AUUGUCAG-C-CAAUCC-CCACAUGGGAAUGUG-------------GACAUG-------UCCUGCA-AUUCUGAAGGGAUU
AJ240068.1/1-85      UAGCC-AAUGAGGACAU-CAGAUUAUAAAAGAACACCAUCUUUCGGGACUGAUUAA---------------CAUUGAUGAUACUUCUGCA-AUUCUGA--GGCUA
AC096691.6/4089-3994 UGGCC-GGUGAAGAAAA-CCUCG-AUUAAAAA-CACCAUCUUUCGGGGCUGAUCGGCCGCCGCUCGGCG-GCCAUGCUGCCA-UUCUGCA-AUUCUGA--GGCCA
AJ242537.1/1-95      -AGCC-GAUGUGGAUAU-CAGAUUAUAAAAGAACACCAUCUUUCGGGACUGAUUGACUUCU--UUUGAA-GUUUUGCUGAUACUUCUGCA-AUUCUGA--GGCU-
AC096691.6/4322-4224 CGACG--GUGAUGAAAAACCGCA-AGAAAAACACACCAUCUUUCGGGGCUGAUUUGGCGCCGCCGCGCGUGCAAUGAUGCUAAUUCUGCA-AUUCUGA--UGUCC
AC096691.6/3905-3812 GGACC-UGUGAUGAAAU-CUGGA-ACCAAAAA-UACCAUCUUUCGGGACUGAUUUGGCUU---UCAGCA-GCCAUGUUGUCACUUCCAAG-AUCCUGA--GGUCU
AJ010681.1/2-84      CUAUU-UAUGAUGAUUU-CCC----UUAAUUU-UACCAUCUUUCGGGUCUGAAUUAA-------------GAUGUGUUGAUAUUAUGGGAUAUACUGA--AAUAG
#=GC SS_cons         <<<<<.___________._____.________.________________________.............____________________._______..>>>>>
#=GC RF              cggCc.aGUGAUGAaAa.ccGau.AUuAAaaa.CACcAUCUUUCGGGaCUGAuUgag.............GacaUGuUGaUAcUuCUGcA.AUUCUGA..gGccg
//
