# STOCKHOLM 1.0
#=GF ID mir-7
#=GF AC RF00053
#=GF DE mir-7 microRNA precursor family
#=GF AU Daub J; 0000-0001-6022-563X
#=GF GA 51.8
#=GF NC 51.7
#=GF TC 51.8
#=GF SE Griffiths-Jones SR
#=GF SS Predicted; PFOLD
#=GF TP Gene; miRNA;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF DR MIPF; MIPF0000022;
#=GF DR SO; 0001244; pre_miRNA;
#=GF DR GO; 0035195; miRNA-mediated post-transcriptional gene silencing;
#=GF DR GO; 0016442; RISC complex;
#=GF RN [1]
#=GF RM 11679670
#=GF RT Identification of novel genes coding for small expressed RNAs.
#=GF RA Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T
#=GF RL Science 2001;294:853-858.
#=GF RN [2]
#=GF RM 11779458
#=GF RT microRNAs: tiny regulators with great potential.
#=GF RA Ambros V
#=GF RL Cell 2001;107:823-826.
#=GF RN [3]
#=GF RM 30423142
#=GF RT miRBase: from microRNA sequences to function.
#=GF RA Kozomara A, Birgaoanu M, Griffiths-Jones S
#=GF RL Nucleic Acids Res. 2019;47:D155.
#=GF CC This family represents the microRNA (miRNA) precursor mir-7. This miRNA
#=GF CC has been predicted or experimentally confirmed in a wide range of species
#=GF CC (MIPF:MIPF0000022). miRNAs are transcribed as ~70nt precursors (modelled
#=GF CC here) and subsequently processed by the Dicer enzyme to give a ~22nt
#=GF CC product. In this case the mature sequence comes from the 5' arm of the
#=GF CC precursor. The extents of the hairpin precursors are not generally known
#=GF CC and are estimated based on hairpin prediction. The products are thought to
#=GF CC have regulatory roles through complementarity to mRNA. The involvement of
#=GF CC Dicer in miRNA processing suggests a relationship with the phenomenon of
#=GF CC RNA interference. miRNAs are numbered based on the sequence of the mature
#=GF CC RNA.
#=GF WK mir-7_microRNA_precursor
#=GF SQ 132

URS0000D56AD2_7739/1-82    -----G-UGUUCUGUAUGGAAGACUAGUGAUUU-UGUUGUU-GUGUGUC-UUGCAA-----ACAACAGUAAAUC-ACA-GUCU-UCCUUACGGUGCAUC---
URS0000D568A6_7741/1-83    -----A-UGUUCGGUAUGGAAGACUAGUGAUUU-UGUUGUU-GUGUGUCGUUGCAA-----ACAACAGUAAAUC-ACA-GUCU-UCCUUACGGUGCAUU---
URS0000759D02_7955/13-103  CUGCCC-UCUGCGGAGUGGAAGACUAGUGAUUU-UGUUGUG-A--AAAUGAACAAAA---ACCAACAACAAACC-GCA-GUCG-UCCUCUCAGCACGGGGCC
URS0000D52105_7998/1-64    ----------------UGGAAGACUAGUGAUUU-UGUUGUG-A--AAAUGAACAAAA---ACCAACAACAAACC-GCA-GUCG-UCCUCU------------
URS0000759A99_7668/2-93    AUACCU-CUGGCCCUUUGGAAGACUAGUGAUUU-UGUUGUU-GUGAA-UGUCAAAGA---ACUAACAAAAAAUC-ACU-GUCG-GCCACUGGGGACAGAGGU
URS0000D55A69_7654/1-88    -----U-CUGGCCCUAUGGAAGACUAGUGAUUU-UGUUGUU-GUGAAAUGUCAAAGA---ACUAACAAAAAAUC-ACU-GUCG-GCCACUGGGGACAGGGGU
URS0000D54A52_8030/1-63    ----------------UGGAAGACUAGUGAUUU-UGUUGUG-AUGCUGAGCAAUGAG------AACAACAAGUC-CCA-GUCU-GCCUCU------------
URS0000D54BE8_8030/1-66    ----------------UGGAAGACUAGUGAUUU-UGUUGUG-AUGCUGAGCAAUGAG---AAUAACAACAAGUC-CCA-GUCU-GCCUCU------------
URS000075AEB3_8090/9-97    UGUUGGUAGUGCUGAAUGGAAGACUAGUGAUUU-UGUUGUG-ACGUUGAUGGA--AG------AACAACAAGUC-CCA-GUCU-ACCUCUCAGCACAAGCAG
URS000075EE96_59729/1-84   ---UGG--CU-CUGUGUGGAAGACUAGUGAUUU-UGUUGUU-GUG-U---UUGUAAA---GGUGACAACAAAUC-AUA-GCCU-GCCAUACAGCCCAGGCUG
URS0000D51767_28377/4-92   GGCUGG--UUUCUGGGUGGAAGACUAGUGAUUU-UGUUGUU-CUGAC---UUAUAAU---UUAGACAACAAAUC-GUA-GCCU-GCCGCCCAGCGACCACAG
URS0000A8443B_99883/1-65   ----------------UGGAAGACUAGUGAUUU-UGUUGUU-UGG-----UGUCAAA---AUUGACAACAAAUC-AUU-GUCU-UCCUCACUGC--------
URS0000D4F8FC_8030/1-61    ----------------UGGAAGACUAGUGAUUU-UGUUGUU-AUG-----UGUCAAA---AUUGACAACAAGUC-AUG-GUCU-ACCUCA------------
URS00002C5007_9597/9-99    UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS000075AB18_9598/9-99    UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS00002C5007_9519/9-99    UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS00002C5007_9600/9-99    UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS00002C5007_9593/9-99    UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS00002C5007_9606/9-99    UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS000075D16A_10116/4-94   UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAGACGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS0000759A7E_13616/2-77   UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAACGACAACAAAUC-ACA-GUCU-GCC---------------
URS000075EF96_10090/9-99   UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAACGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS000075E196_9305/44-134  UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAACGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS0000066D82_78454/9-99   UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAAUUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS000075E289_9031/8-98    UGGUCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAAUUAAAUUGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGAUCA
URS000075E6DE_59729/1-73   -----U-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUUGAUAACUAAAUUGACAACAAAUC-ACA-GUCU-GCCAU-------------
URS000075B6EE_9031/8-99    UGGUCU-AGUUCUGUGUGGAAGACUAGUGAUUUUUGUUGUU------UUUAGAUAACUAAAUUGACAACAAAUC-ACA-GUCU-ACCAUAUGGCACAGACUA
URS0000D528A5_8665/13-103  UGGUCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUUACUAAAGUGACAACAAAUC-GCA-GUCU-ACCAUAUGGCACAGUCCA
URS000075EA67_8364/8-98    UGGUUU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACAACAUUGACAACAAAUC-GCA-GUCU-GCCAUAUGGCACAGACCA
URS000075BFDC_9258/35-125  UGGUCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UGUAGAUAACUAAAUCGACAACAAAUC-GCA-GUCU-GCCAUAUGGCACAGACCA
URS00007E379D_28377/4-94   UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUUGACAACAAAUC-GCA-GUCU-ACCAUAUGGCACAGGCCA
URS0000616578_9545/9-99    UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUUGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS0000616578_9544/9-99    UGGCCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUUGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS00007E5093_246437/1-64  ----------------UGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUA------------
URS000075D2AC_9823/8-98    UGGUCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS000075D2AC_9417/8-98    UGGUCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS000075BD7A_9796/1-88    UGGUCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UGUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGG---
URS000075A223_9913/8-98    UGGUCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUGAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS00007E3EA2_9925/43-133  UGGUCU-AGUUCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUGAAUCGACAACAAAUC-ACA-GUCU-GCCAUAUGGCACAGGCCA
URS00007E5093_9615/1-64    ----------------UGGAAGACUAGUGAUUU-UGUUGUU------UUUAGAUAACUAAAUCGACAACAAAUC-ACA-GUCU-GCCAUA------------
URS000075DBF9_31033/3-91   CUGUCU-GCUGCUGUGUGGAAGACUAGUGAUUU-UGUUGUU------UUUAGUUAGAUCAACUGACAACAAAUC-ACA-GUCU-GCCAAACAGCACAGGC--
URS0000D536B7_8030/1-64    ----------------UGGAAGACUAGUGAUUU-UGUUGUU------UUUAGUUAGAUGAAUCGACAACAAAUC-ACA-GUCU-GCCAAA------------
URS0000AABD2D_7757/1-88    -GGUCUUGCGGCCGGGUGGAAGACUAGUGAUUU-UGUUGUU------UCGAUCUAGA-AACC-AACAGCAAGUC-ACA-GUCU-CCCGUCCGGCUCAGAUC-
URS0000A7E290_7757/2-90    UGGUCU-GCUGCCAGGUGGAAGACUAGUGAUUU-UGUUGUU------GAAAUAUGAA-AAUG-AGCAACAAGUC-ACA-GUCU-CCCGUCUAGCACAGACUU
URS000075B917_9031/4-93    UGGUCUGGCU-CUGUGUGGAAGACUAGUGAUUU-UGUUGUU------AUGAUUUAUA-AAGGUGACAACAAAUC-AUA-GCCU-GCCAUACAGCACAGAUCU
URS0000D508A0_8665/6-92    UGGCCU-GCUUCUGAUUGGAAGACUAGUGAUUU-UGUUGUU------GUGGUGUAGA-AAAGCGACAACAAAUC-ACA-GCCU-ACCAUCCAG--CAGGGG-
URS000075D938_7955/8-98    UGGCUU-GCUUCUGUGUGGAAGACUUGUGAUUU-UGUUGUU------GUUAGUUAGAUGAAGUGACAACAAAUC-ACG-GUCU-GCCCUACAGCACAGGCCC
URS0000D51247_7962/7-97    UGGCUU-GCUUCUGUGUGGAAGACUUGUGAUUU-UGUUGUU------GUUAGUUAGAUGAAGUGACAACAAAUC-ACG-GUCU-GCCCUACAGCACAGGCCC
URS0000D54B5D_7998/1-64    ----------------UGGAAGACUUGUGAUUU-UGUUGUU------GUUAGUUAGAUGAAGUGACAACAAAUC-ACG-GUCU-GCCCUA------------
URS000075CAE5_9606/18-105  CGGCUG--GCCCCAUCUGGAAGACUAGUGAUUU-UGUUGUU-----GUCUUACUG--CGCUC-AACAACAAAUC-CCA-GUCU-ACCUAAUGGUGCCAGCCA
URS000075E49F_9598/17-104  CGGCUG--GCCCCAUCUGGAAGACUAGUGAUUU-UGUUGUU-----GUCUUACUG--CGCUC-AACAACAAAUC-CCA-GUCU-ACCUAAUGGUGCCAGCCA
URS000023C510_9593/18-105  CGGCUG--GCCCCAUCUGGAAGACUAGUGAUUU-UGUUGUU-----GUCUUACUG--CGCUC-AACAACAAAUC-CCA-GUCU-GCCUAAUGGUGCCAGCCA
URS0000526116_9600/18-105  CGGCUG--GCCCCGUCUGGAAGACUAGUGAUUU-UGUUGUU-----GUCUUACUG--CGCUC-AACAACAAAUC-CCA-GUCU-GCCUAAUGGUGCCAGCCA
URS000043D81E_9545/18-105  UGGCUG--GCCCCGUCUGGAAGACUAGUGAUUU-UGUUGUU-----GUCUUACUG--CGCUC-AACAACGAAUC-CCA-GUCU-GCCGAAUGGUGCCAGCCA
URS000075A0DE_9544/18-105  UGGCUG--GCCCCGUCUGGAAGACUAGUGAUUU-UGUUGUU-----GUCUUACUG--CGCUC-AACAACAAAUC-CCA-GUCU-GCCGAAUGGUGCCAGCCA
URS000075A583_9796/1-60    ----------------UGGAAGACUAGUGAUUU-UGUUGUU-----GUCUUGCUG--CGCCC-AACAACAAGUC-CCA-GUCU-GCCG--------------
URS000075C33A_9913/7-93    CAGCCA--GCCCCAUCUGGAAGACUAGUGAUUU-UGUUGUU-----GUCUC-CUG--CGCUC-AACAACAAGUC-CCA-GUCU-GCCGCAUGGUGCUGGCCA
URS00007E3A2B_9823/1-84    ----CA--GCCCCAUCUGGAAGACUAGUGAUUU-UGUUGUU-----GUCUCACUG--CGCUC-AACAACAAGUC-CCA-GUCU-GCCGCAUGGUGCCGGCCA
URS000075EBE8_10090/5-92   GGGCCA--GCCCCGUUUGGAAGACUAGUGAUUU-UGUUGUU-----GUGUCUCUG--UAUCC-AACAACAAGUC-CCA-GUCU-GCCACAUGGUGCUGGUCA
URS000075B8AE_10029/46-133 AGGCCA--GCCCCGCCUGGAAGACUAGUGAUUU-UGUUGUU-----GUCUCUCUA--UACUC-AACAACAAGUC-CCA-GUCU-ACCACACGGUGCGGGUCC
URS000075D082_10116/5-90   AGACCA--GCCCUGUCUGGAAGACUAGUGAUUU-UGUUGUU-----GUGUCU--G--UGUCC-AACAACAAGUC-CCA-GUCU-GCCACAUGGUGUUGGUCA
URS00007E4BBC_9615/1-62    ----------------UGGAAGACUAGUGAUUU-UGUUGUU-----GUCUCACUG--CAUCC-AACAACAAGUC-CCA-GUCU-GCCACA------------
URS000075A009_59729/1-73   -----U-GCUUCCCUGUGGAAGACUAGUGAUUU-UGUUGUU-----GUAUGGCUCAUCCCAC-CACAACAAGUC-ACA-GUCU-GCCCU-------------
URS000075A20B_9031/5-95    GGCCGC-GGUGCCCUCUGGAAGACUAGUGAUUU-UGUUGUU-----GUAUGGCUCAUCCCAC-CACAACAAGUC-ACA-GUCU-GCCUUAGGGCGCACGGCC
URS0000759AF9_9258/9-99    UGGCCG-GGCCCCGUCUGGAAGACUAGUGAUUU-UGUUGUU-----CUCUAGCUGACCGCAC-GACAACAAAUC-CCA-GUCU-GCCUGACGGUGCCCGGUG
URS000075D287_9258/1-88    --GCCG-GGCCCCGUCUGGAAGACUAGUGAUUU-UGUUGUU-----CUCUAGCUGACCGCAC-GACAACAAAUC-CCA-GUCU-GCCUGACGGUGCCCGGU-
URS000075D217_7955/1-78    --------------UGUGGAAGACUAGUGAUUU-UGUUGUU-----GUUUCUUCUGCU-UUCUGACAACAAGUC-ACA-GUCU-ACCUCAGCGAGCGGGCCC
URS0000D4F06E_7998/1-64    ----------------UGGAAGACUAGUGAUUU-UGUUGUU-----GUUUCUUCUGCU-UUCUGACAACAAGUC-ACA-GUCU-ACCUCA------------
URS0000D55C84_7757/5-93    GAGCUG-UGGGCCAUGUGGAAGACUUGUGAUUG-UGUUGUU-----GUAUCGCUAAA---GCAGGCAACAAAUC-ACA-GUGU-UCCGCAUGGAGCGGUGCU
URS000075B7B5_7955/1-87    ---UUU-UGGGCAUUAUGGAAGACUAGUGAUUU-UGUUGUU-----GUGACGUCAUCAGUACUGACAACAAGUC-ACA-GUCU-GCCUCA--GUGACCAGAA
URS0000D5124B_7962/1-88    --AUUU-UGGGCACCAUGGAAGACUAGUGAUUU-UGUUGUU-----GUGAAGUCACCGGUGCUGACAACAAGUC-ACA-GUCU-GCCUCA--GUGACCAGAA
URS0000D54925_7998/1-65    ----------------UGGAAGACUAGUGAUUU-UGUUGUU-----GUGACGUCAUCAGUACUGACAACAAGUC-ACA-GUCU-GCCUCA------------
URS000075C2D5_8364/9-97    GGCUGA--CU-CUUUGUGGAAGACUAGUGAUUU-UGUUGUU-----GUAAGCCUUAUUGCA-UGACAACAAGUC-ACA-GUCU-GCCUCACAGUGCCCAGCA
URS0000D52CF4_8030/1-63    ----------------UGGAAGACUAGUGAUUU-UGUUGUU-----GUAAAUUUAGCU-CUCUGACAACAAGUC-ACA-GUCU-ACCUC-------------
URS0000D53DB6_8030/1-63    ----------------UGGAAGACUAGUGAUUU-UGUUGUU-----GUAAAUUUAGCU-CACUGACAACAAGUC-ACA-GUCU-ACCUC-------------
URS0000D4F6A8_8030/1-64    ----------------UGGAAGACUAGUGAUUU-UGUUGUU-----GUAAAUUCAGCA-CCCAGACAACAAGUC-AUA-GUCU-ACCUCA------------
URS00007E4BCA_28377/3-90   GCCCUG--CU-UCUUAUGGAAGACUAGUGAUUU-UGUUGUU-----CUGUAGUUCAUCUCAC-GACAACAAGUC-ACA-GUCU-GCCUUAUGG-GGCCUGGC
URS0000D534CF_8665/1-81    ------------CUUAUGGAAGACUAGUGAUUU-UGUUGUU-U---CUGUAGCUCAUCUCAU-GACAACAAGUC-GCA-GUCU-GCCUUAUGGGGUCUGGCC
URS0000A9B6E3_7998/1-65    ----------------UGGAAGACUAGUGAUUU-UGUUGUU-----UUUUUAUGAUGGAAGGAGACAACAAGUC-AUA-GUCU-GCCUCA------------
URS00004C38BB_9606/16-102  UGGUCU-AGUGCUGUGUGGAAGACUAGUGAUUU-UGUUGUU-----CUGAUGU-----ACUACGACAACAAGUC-ACA-GCCG-GCCUCAUAGCGCAGACUC
URS00004C38BB_9598/16-102  UGGUCU-AGUGCUGUGUGGAAGACUAGUGAUUU-UGUUGUU-----CUGAUGU-----ACUACGACAACAAGUC-ACA-GCCG-GCCUCAUAGCGCAGACUC
URS00004C38BB_9597/16-102  UGGUCU-AGUGCUGUGUGGAAGACUAGUGAUUU-UGUUGUU-----CUGAUGU-----ACUACGACAACAAGUC-ACA-GCCG-GCCUCAUAGCGCAGACUC
URS0000A9AAAF_9600/16-102  UGGUCU-AGUGCUGUGUGGAAGACUAGUGAUUU-UGUUGUU-----CUGAUGU-----ACUAUGACAACAAGUC-ACA-GCCG-GCCUCAUAGCGCAGACUC
URS000075EE3D_9544/16-102  UGGUCU-AGUGCUGUGUGGAAGACUAGUGAUUU-UGUUGUU-----CUGAUGU-----GCUACGACAACAAAUC-ACA-GCCG-GCCUCAUAGCGCAGACUC
URS0000CC468C_9593/16-102  UGGUCU-AGUGCUGUGUGGAAGACUAGUGAUUU-UGUUGUU-----CUGAUGU-----ACUACGACAACAAGUC-ACA-GCCG-GCCUCACAGCGCAGACUC
URS000075E84F_9913/16-82   UGGUCU-AGUGCUGUGUGGAAGACUAGUGAUUU-UGUUGUU-----CUGAUGU-----ACUAUGACAACAAGUC-ACA-GC---------------------
URS00007E3F57_9615/10-88   UGGUCU-AGUGCUGUGUGGAAGACUAGUGAUUU-UGUUGUU-----CUGAUGU-----ACUAUGACAACAAGUC-ACA-GCUU--CCUCAUAGCG-------
URS00006ED719_9796/1-84    -GGUCU-AGUGCUGUGUGGAAGACUAGUGAUUU-UGUUGUU-----UUGACGU-----ACUAUGACAACAAAUC-ACG-GCUU--CCUCACAGCGUAGGCU-
URS000075AECB_10090/15-101 UGAGCC-AGUGCUAUGUGGAAGACUUGUGAUUU-UGUUGUU-----CUGAUAU-----GAUAUGACAACAAGUC-ACA-GCCA-GCCUCAUAGCGUGGACUC
URS000075C87E_10116/14-100 UGAGCC-AAUGCUAUGUGGAAGACUUGUGAUUU-UGUUGUU-----CUGAUAU-----GAUAUGACAACAAGUC-ACA-GCCA-GCCUCAUAGAGUGGACUC
URS000075D59B_10029/1-80   -------AGUGCUAUGUGGAAGACUUGUGAUUU-UGUUGUU-----CUAAUGU-----GAUAUGACAACAAGUC-ACA-GCCG-GCCUCAUAGCGUGGACU-
URS00007E40E2_246437/1-60  ----------------UGGAAGACUAGUGAUUU-UGUUGUU-----CUGAUAU-----GUGAUGACAACAAGUC-ACA-GCCG-GCCUCA------------
URS00007E3577_246437/1-62  ----------------UGGAAGACUAGUGAUUU-UGUUGUU-----GUGUCACUAU---ACUCAACAACAAGUC-CCA-GUCU-GCCACA------------
URS000075D85E_8364/1-88    ---CUG--GGUCGGUUUGGAAGACUAGUGAUUU-UGUUGUU-UUUAUAAAAGUUUGU--CACAAACAGCAAAUC-GUA-GUCU--CCACUCUGCCCCAGGA-
URS0000D4F02E_34765/1-96   AUCUGG-UUGACGGUUUGGAAGACUAGUGAUUU-UGUUGACUUGGACAUAAUUGUCGUUUCUUGUCAACUCA-C-ACUAGUUU-CCCGUACUG-CAUCGGAU
URS000075AA98_7719/1-78    AUAUCC-GCACCCGGUUGGAAGACUAGUGAUUU-UGUUGUU--------AUAGC---------AACAACAA-UCUAUG-GUCU-CCUGCACGGAAG-UGGA-
URS0000A95A4E_51511/1-80   CCGUCC-UCUACCACGUGGAAGACUAGUGAUUU-UGUUGUU--------UCAUC---------AACAACAA-UCUUUA-GUCU-ACUGCACGGUUGAUGGAU
URS0000D56B3E_6253/1-82    -------ACUCCCGGGUGGAAGACUGGUGAUUU-UGUUGUU--------UGAGCUCAUCCA-UAACAGCAAAUCCGUA-GUCU-CC-ACCUGGCAACUCCUA
URS00009F99D9_6279/6-91    UUAAAG-CUGACCAGGUGGAAGACUUGUGAUUU-UGUUGUU--------UAUACAUUUUCAGCAACAGCAAAUCCGAG-CUCU-CC-ACCCGGAGGCAU---
URS0000D552EB_6210/1-81    ----CA-UUGCUUUUGUGGAAGACUGGUGAUAU--GUUGUA--------AAGCUCCCCUACCAUACAGCGUAUC-GCA-GUUUUUCCCUAAAAACAUU----
URS0000D552EB_6211/1-81    ----CA-UUGCUUUUGUGGAAGACUGGUGAUAU--GUUGUA--------AAGCUCCCCUACCAUACAGCGUAUC-GCA-GUUUUUCCCUAAAAACAUU----
URS00005F4704_7227/1-88    GAGUGC--AUUCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUUUGGUAA-------UAACAAUAAAUC-CCUUGUCU--UCUUACGGCGUGCAUUU
URS00005F4704_7238/1-88    GAGUGC--AUUCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUUUGGUAA-------UAACAAUAAAUC-CCUUGUCU--UCUUACGGCGUGCAUUU
URS00005F4704_7240/1-88    GAGUGC--AUUCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUUUGGUAA-------UAACAAUAAAUC-CCUUGUCU--UCUUACGGCGUGCAUUU
URS000053D910_7245/1-88    GAGUGC--AUUUCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUUUGGUAA-------UAACAAUAAAUC-CCUUGUCU--UCUUACGGCGUGCAUUU
URS00001E0068_7220/1-88    GAGUGU--AUUCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUUUGGUAA-------UAACAAUAAAUC-CCUUGUCU--UCUUACGGCGUGCAUUU
URS000042E67E_7237/1-88    GAGUGU--AUUCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUCUGCUAA-------UAACAAUAAAUC-CCUUGUCU--UCUUACGGCGUGCAUCU
URS000042E67E_7234/1-88    GAGUGU--AUUCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUCUGCUAA-------UAACAAUAAAUC-CCUUGUCU--UCUUACGGCGUGCAUCU
URS000047F515_7217/1-86    -AGUGC--AUUCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUUUAUGGUAA-------UAACAAUAAAUC-CCUUGUCU--UCUUACGGCGUGCAUU-
URS00000CF844_7222/1-86    -AAUGC--AUUCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUUUGUUAA-------UAACAAUAAAUC-CCUUGUCU--CCUAACGGCGCGCAUU-
URS000035444A_7230/1-87    GAGUGC--UUGCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUCUGCUAA-------UAACAAUAAAUC-CCUUGUCU--UCUUAUGGCUCGCAUU-
URS00004877EC_7244/1-86    -AAUGC--UUUCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUCUGCUAA-------UAACAAUAAAUC-CCUUGUCU--UCUUAUGGCGCGCAUU-
URS00004E1775_7260/1-91    GAAUGC--AUUCCGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGUCUUUAAUAAAA----UUAACAAUAAAUC-CCUUGUCU--UCUUAUGGCGUGUAUUU
URS0000D5647B_32264/1-79   -------AUCUCCUUGUGGAAGACUAGUGAUUU-UGUUGUU-UGUCUGUUAGUAAU-----UAAACAAGAAAUC-GCU-AGCU--UCCGAUGGAGAA-----
URS0000D531EC_6945/1-80    -GGGGC-CCUCCCGUCUGGAAGACUAGUGAUUU-UGUUGUU-CUG-UCAAACUUGG------AAACAAGAAAUC-ACU-AUCU--CCGAACGGUG-------
URS0000D55081_46514/8-92   GCCGGU-CCCCCCAU--GGAAGACUAGUGAUUU-UGUUGUU-GUAAUCAAAA--GA------AAACAUAAAAUC-ACU-GUCU--GCCACUGGGGUGGCUGG
URS00007E3C16_10224/1-86   GUGUCA-CAUACCAUAUGGAAGACUAGUGAUUU-UGUUGUU-GUCACCUGUUCCA--------AACAAAAAAUC-ACA-GUCU--GCCAUUAUGGUGUUUG-
URS00006543DD_7425/1-87    -UGAGC-GUCGUUGUAUGGAAGACUAGUGAUUU-UGUUGUU-CUACUUAAGAU--------GUAACAAGGAAUC-ACUAAUCA--UCCUACAAAGACGCUCG
URS0000D53A8D_7427/1-86    --GAGC-GUCGUUGUAUGGAAGACUAGUGAUUU-UGUUGUU-CUACUUAAGAU--------GUAACAAGGAAUC-ACUAAUCA--UCCUACAAAGACGCUCG
URS0000672B7B_7460/1-87    -CGAGC-GCCGUUGCAUGGAAGACUAGUGAUUU-UGUUGUU-CUACUUUCGAU--------AUAACAAGGAAUC-ACUAAUCA--UCCUACAAAGGCGCUCG
URS000075B872_7070/1-78    -----U-GGUGUUGUGUGGAAGACUAGUGAUUU-UGUUGUU-CUAAUUUUUAC--------GUAACAAGGAAUC-ACUAAUCA--UCCCACAAAGCC-----
URS0000D4F722_6669/6-93    CCGGCU-GUUGUGGUAUGGAAGACUAGUGAUUU-UGUUGUU-CGGCAUAAAGACCG-----GUAACAAAAAAUC-UCUAGUUC--ACCUACCAAGGCAG---
URS000075B1EA_7029/1-70    ----------------UGGAAGACUAGUGAUUU-UGUUGUU-UUAAAAAAAAAGUAUUUUCCUAACAAGAAGUC-UCUAGUCU--UCUUAC-----------
URS0000D53688_7130/10-92   GCCGC---GCGUUGUAUGGAAGACUAGUGAUUU-UGUUGUU-U--UGAUUAAU---------UAACAAGGAAUC-ACUAAUCU--GCCUACAAAGCGUCGGC
URS0000D517A8_51655/16-98  GCCCC---GAGUUGUAUGGAAGACUAGUGAUUU-UGUUGUU-U--UAUUGAAU---------UAACAAGGAAUC-ACUAAUCU--CCCUACAAAGCGGUGGC
URS0000D53DCD_34740/21-108 CUGCCU-CGCGUUGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGAUAAUAUAUA--------UAACAAUAAAUC-ACUAAUCU--CCCUACAAAGCGCUGGC
URS0000D5367B_7159/1-89    UCGCAA-UAUUUUGUAUGGAAGACUAGUGAUUU-UGUUGUU-UUGCUUACGAUA-------AUAACAAUAAAUC-UCAAGUCU--UUCUACAAAGUUUGCUG
URS0000D53B96_7176/1-89    UCGCAA-UAUUUUGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGCUUAAGAUA-------GUAACAAUAAAUC-UCCAGUCU--UUCUACAACGUUUGCUG
URS000036AADB_7165/1-87    -GGCAA-AACAUUGUAUGGAAGACUAGUGAUUU-UGUUGUU-UGGCUUAUGAUA-------CUAACAAUAAAUC-UCUCGUCU--UUCUACAAAGUUUGCC-
URS00006B97CC_7091/2-84    GCU-UC--GUGUUGUAUGGAAGACUAGUGAUUU-UGUUGUU-U--UUGUUGAC---------UAACAAGAAAUC-ACUAAUCU--GCCUACAAAGCGACAGC
URS00007ABDC3_283909/6-94  CUCUGU-UUCAUGAUGUGGAAGACUAGUGAUUU-UAUUGUU-UA---UGAAAUC-----UGCCAACAAUAAAUC-ACA-CUCUUCUCACAUCAUGUACAGUA
URS0000D54304_225164/7-95  -UAUCU-ACCCUGGUCUGGAAGACUAGUGAUUU-UGUUGUU-U----UAAUUUCAG---UAUUAACAAUAAAUC-ACA-UUCUUCCCAGAUUGUGGUUGAUC
#=GC SS_cons               :<<<<<.-<<-<<<<<<<<-<<<<<-<<<<<<<.-<<<<<<.....___________._____>>>>>>>>>>>.>>>.>>>>.->>>>>>>>->>>>>>>:
#=GC RF                    ucgccu.agcuccguauGGAAGACuAGuGAuUU.UgUUGUu.....uUuuaguuaaa.aaauuaACAAcAAaUC.aCa.GUCU.gCCauacggcgcaggcga
//
