INFERNAL1/a [1.1.5 | Sep 2023] NAME Entero_CRE ACC RF00048 DESC Enterovirus cis-acting replication element STATES 187 NODES 51 CLEN 61 W 76 ALPH RNA RF no CONS yes MAP yes DATE Tue Jul 9 07:59:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00048/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 56 EFFN 3.229980 CKSUM 2927476491 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 62.10 NC 42.60 EFP7GF -11.0027 0.71915 ECMLC 0.57972 -5.29109 5.19325 1600000 523369 0.002293 ECMGC 0.38427 -15.37741 -0.27002 1600000 132831 0.003011 ECMLI 0.61542 -2.56685 6.47335 1600000 312886 0.003835 ECMGI 0.44211 -10.08840 2.23406 1600000 92912 0.004305 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 76 96 -7.401 -7.608 -0.039 -6.023 IL 1 1 2 1 4 1 19 80 100 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 18 79 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 1 19 76 96 -8.390 -0.015 -7.044 0.534 -0.633 0.202 -0.402 D 4 2 3 5 3 0 12 75 95 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 17 78 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - A - - - ML 6 5 3 8 3 1 18 75 95 -8.390 -0.015 -7.044 1.761 -2.365 -2.314 -2.210 D 7 5 3 8 3 0 12 74 94 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 17 77 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 17 74 94 -8.390 -0.015 -7.044 -2.296 -2.156 -3.060 1.787 D 10 8 3 11 3 0 11 73 93 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 16 76 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 16 73 93 -8.390 -0.015 -7.044 -0.301 -1.146 0.781 0.026 D 13 11 3 14 3 0 10 72 92 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 15 75 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 15 72 92 -8.390 -0.015 -7.044 1.680 -2.243 -2.120 -1.495 D 16 14 3 17 3 0 10 71 90 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 14 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 15 71 91 -8.390 -0.015 -7.044 0.691 -1.409 0.442 -0.620 D 19 17 3 20 3 0 9 70 89 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 13 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - c - - - ML 21 20 3 23 3 1 14 70 89 -8.390 -0.015 -7.044 -0.630 0.754 -1.648 0.432 D 22 20 3 23 3 0 8 69 88 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 13 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 13 69 88 -8.390 -0.015 -7.044 1.584 -2.035 -1.334 -1.467 D 25 23 3 26 3 0 8 68 87 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 12 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 12 68 87 -8.390 -0.015 -7.044 1.690 -2.460 -1.504 -2.061 D 28 26 3 29 3 0 7 67 86 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 11 70 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - u - - - ML 30 29 3 32 3 1 12 67 86 -8.390 -0.015 -7.044 -0.606 0.240 -1.575 0.869 D 31 29 3 32 3 0 6 66 85 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 11 69 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - U - - - ML 33 32 3 35 3 1 11 66 85 -8.390 -0.015 -7.044 -2.296 -2.156 -3.060 1.787 D 34 32 3 35 3 0 5 65 84 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 10 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 10 65 84 -8.756 -0.014 -7.074 1.852 -3.230 -2.780 -2.860 D 37 35 3 38 3 0 5 64 83 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 9 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 61 - a - - MR 39 38 3 41 3 1 9 64 83 -8.756 -0.014 -7.074 0.370 -0.366 -0.158 0.050 D 40 38 3 41 3 0 3 62 81 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 8 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 60 - U - - MR 42 41 3 44 3 1 9 63 82 -8.756 -0.014 -7.074 -2.296 -2.156 -3.060 1.787 D 43 41 3 44 3 0 2 61 80 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 7 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 59 - a - - MR 45 44 3 47 3 1 8 62 81 -8.756 -0.014 -7.074 0.267 0.050 -0.201 -0.166 D 46 44 3 47 3 0 2 60 79 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 6 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 58 - a - - MR 48 47 3 50 3 1 7 61 80 -8.756 -0.014 -7.074 0.225 0.005 -0.197 -0.066 D 49 47 3 50 3 0 1 59 78 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 5 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 57 - U - - MR 51 50 3 53 3 1 6 60 79 -8.756 -0.014 -7.074 -2.296 -2.156 -3.060 1.787 D 52 50 3 53 3 0 1 58 77 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 5 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 56 - u - - MR 54 53 3 56 3 1 6 59 78 -8.756 -0.014 -7.074 -0.161 0.438 -1.390 0.453 D 55 53 3 56 3 0 0 57 76 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 4 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 55 - g - - MR 57 56 3 59 3 1 5 58 77 -8.756 -0.014 -7.074 0.097 -0.617 0.585 -0.361 D 58 56 3 59 3 0 0 56 75 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 3 59 78 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 54 - U - - MR 60 59 3 62 3 1 5 57 76 -8.756 -0.014 -7.074 -2.296 -2.156 -3.060 1.787 D 61 59 3 62 3 0 0 55 74 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 3 58 77 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 53 - u - - MR 63 62 3 65 3 1 4 56 75 -8.756 -0.014 -7.074 -0.658 0.251 -1.602 0.885 D 64 62 3 65 3 0 0 54 74 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 2 57 76 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 52 - U - - MR 66 65 3 68 5 1 4 55 74 -7.471 -0.030 -7.287 -7.499 -8.390 -1.417 -0.646 -2.172 1.467 D 67 65 3 68 5 0 0 53 73 -5.352 -0.707 -2.978 -4.409 -2.404 IR 68 68 3 68 5 1 1 55 74 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 13 51 C G - - MP 69 68 3 73 6 2 5 54 73 -9.298 -9.237 -0.018 -8.013 -8.293 -8.688 -4.922 -4.941 -4.537 -1.100 -3.131 -4.884 3.600 -3.979 -4.592 -0.934 -4.826 -2.949 0.372 -4.936 -0.095 -3.408 ML 70 68 3 73 6 1 1 52 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 3 73 6 1 1 52 71 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 3 73 6 0 0 50 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 53 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 53 72 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 14 50 A U - - MP 75 74 6 79 6 2 5 52 71 -9.298 -9.237 -0.018 -8.013 -8.293 -8.688 -4.277 -3.131 -4.314 3.558 -5.400 -6.266 -1.053 -4.401 -4.148 0.583 -4.752 0.215 -1.264 -5.152 -2.954 -3.099 ML 76 74 6 79 6 1 1 50 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 48 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 51 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 51 70 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 15 49 U A - - MP 81 80 6 85 6 2 4 50 69 -9.298 -9.237 -0.018 -8.013 -8.293 -8.688 -3.851 -3.863 -3.908 -0.433 -3.315 -4.643 0.785 -3.877 -3.933 -0.243 -4.426 -2.056 3.448 -1.288 -1.112 -2.848 ML 82 80 6 85 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 16 48 A U - - MP 87 86 6 91 6 2 4 48 67 -9.298 -9.237 -0.018 -8.013 -8.293 -8.688 -3.611 -2.887 -3.675 3.227 -4.082 -4.882 -0.060 -2.088 -3.669 1.002 -4.218 0.697 -0.310 -4.054 -1.879 -2.640 ML 88 86 6 91 6 1 1 47 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 17 47 C G - - MP 93 92 6 97 4 2 2 46 65 -7.401 -7.608 -0.039 -6.023 -5.498 -5.483 -5.018 -1.657 -3.561 -5.303 3.763 -4.467 -5.116 -1.519 -5.257 -3.461 -0.164 -5.500 -1.308 -3.930 ML 94 92 6 97 4 1 1 46 66 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 4 1 1 46 65 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 96 92 6 97 4 0 0 45 64 -4.568 -4.250 -2.265 -0.520 IL 97 97 5 97 4 1 1 48 67 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 98 98 6 98 3 1 1 47 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 18 - A - - - ML 99 98 6 101 3 1 1 43 62 -8.756 -0.014 -7.074 1.852 -3.230 -2.780 -2.860 D 100 98 6 101 3 0 0 42 61 -5.620 -0.734 -1.403 IL 101 101 3 101 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 29 ] - 46 - u - - MR 102 101 3 104 3 1 1 42 61 -8.756 -0.014 -7.074 0.153 -0.638 -1.292 0.877 D 103 101 3 104 3 0 0 41 60 -6.390 -1.568 -0.620 IR 104 104 3 104 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 45 - C - - MR 105 104 3 107 5 1 1 41 60 -7.471 -0.030 -7.287 -7.499 -8.390 -2.776 1.816 -3.595 -1.993 D 106 104 3 107 5 0 0 40 59 -5.352 -0.707 -2.978 -4.409 -2.404 IR 107 107 3 107 5 1 1 42 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 19 44 G C - - MP 108 107 3 112 6 2 2 40 59 -9.298 -9.237 -0.018 -8.013 -8.293 -8.688 -5.073 -1.839 -5.163 -0.010 -5.995 -4.844 -1.164 -5.606 -4.641 3.701 -4.934 -0.989 -1.453 -4.625 -3.212 -4.079 ML 109 107 3 112 6 1 1 39 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 110 107 3 112 6 1 1 39 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 0 36 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 40 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 20 43 u a - - MP 114 113 6 118 6 2 2 38 57 -9.298 -9.237 -0.018 -8.013 -8.293 -8.688 -4.040 -4.041 -3.895 -0.336 -2.801 -4.438 1.521 -3.530 -3.914 -0.172 -4.290 -2.088 2.896 -4.179 1.579 -2.796 ML 115 113 6 118 6 1 1 37 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 37 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 34 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 38 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 21 42 U A - - MP 120 119 6 124 6 2 2 36 55 -9.298 -9.237 -0.018 -8.013 -8.293 -8.688 -5.299 -5.138 -5.006 -1.373 -3.741 -5.464 0.595 -4.503 -5.004 -1.244 -5.322 -3.006 3.677 -5.394 -1.392 -3.680 ML 121 119 6 124 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 123 119 6 124 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 124 124 5 124 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 125 125 6 125 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 22 41 C G - - MP 126 125 6 130 6 2 2 34 53 -9.298 -9.237 -0.018 -8.013 -8.293 -8.688 -5.498 -5.483 -5.018 -1.657 -3.561 -5.303 3.763 -4.467 -5.116 -1.519 -5.257 -3.461 -0.164 -5.500 -1.308 -3.930 ML 127 125 6 130 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 128 125 6 130 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 129 125 6 130 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 130 130 5 130 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 131 131 6 131 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 23 40 A U - - MP 132 131 6 136 6 2 2 32 51 -9.298 -9.237 -0.018 -8.013 -8.293 -8.688 -4.608 -3.460 -4.533 3.680 -5.329 -6.499 -0.972 -4.518 -4.431 0.190 -5.017 -0.828 -1.383 -5.523 -2.909 -3.347 ML 133 131 6 136 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 134 131 6 136 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 135 131 6 136 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 136 136 5 136 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 137 137 6 137 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 24 39 A U - - MP 138 137 6 142 4 2 2 30 49 -7.401 -7.608 -0.039 -6.023 -4.608 -3.460 -4.533 3.680 -5.329 -6.499 -0.972 -4.518 -4.431 0.190 -5.017 -0.828 -1.383 -5.523 -2.909 -3.347 ML 139 137 6 142 4 1 1 31 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 140 137 6 142 4 1 1 31 50 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 141 137 6 142 4 0 0 30 49 -4.568 -4.250 -2.265 -0.520 IL 142 142 5 142 4 1 1 32 52 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 143 143 6 143 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 25 - G - - - ML 144 143 6 146 3 1 1 28 47 -8.390 -0.015 -7.044 -2.451 -3.786 1.861 -3.166 D 145 143 6 146 3 0 0 27 46 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 26 - a - - - ML 147 146 3 149 3 1 1 27 46 -8.390 -0.015 -7.044 0.681 -1.080 -1.278 0.595 D 148 146 3 149 3 0 0 26 45 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 27 - g - - - ML 150 149 3 152 3 1 1 26 44 -8.756 -0.014 -7.074 -0.632 0.264 0.596 -0.639 D 151 149 3 152 3 0 0 24 43 -5.620 -0.734 -1.403 IL 152 152 3 152 3 1 1 26 45 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 40 ] - 38 - A - - MR 153 152 3 155 3 1 1 25 43 -8.756 -0.014 -7.074 1.852 -3.230 -2.780 -2.860 D 154 152 3 155 3 0 0 23 42 -6.390 -1.568 -0.620 IR 155 155 3 155 3 1 1 25 44 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 41 ] - 37 - U - - MR 156 155 3 158 5 1 1 24 42 -7.471 -0.030 -7.287 -7.499 -8.390 -0.809 -0.979 -1.096 1.295 D 157 155 3 158 5 0 0 23 42 -5.352 -0.707 -2.978 -4.409 -2.404 IR 158 158 3 158 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 28 36 C G - - MP 159 158 3 163 4 2 2 23 41 -7.401 -7.608 -0.039 -6.023 -5.498 -5.483 -5.018 -1.657 -3.561 -5.303 3.763 -4.467 -5.116 -1.519 -5.257 -3.461 -0.164 -5.500 -1.308 -3.930 ML 160 158 3 163 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 161 158 3 163 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 162 158 3 163 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 163 163 5 163 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 164 164 6 164 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 29 - A - - - ML 165 164 6 167 3 1 1 20 38 -8.390 -0.015 -7.044 1.852 -3.230 -2.780 -2.860 D 166 164 6 167 3 0 0 19 38 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 30 - A - - - ML 168 167 3 170 3 1 1 18 37 -8.390 -0.015 -7.044 1.758 -2.348 -2.306 -2.197 D 169 167 3 170 3 0 0 18 37 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 31 - A - - - ML 171 170 3 173 3 1 1 17 36 -8.390 -0.015 -7.044 1.594 -2.231 -1.054 -1.798 D 172 170 3 173 3 0 0 17 35 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 32 - u - - - ML 174 173 3 176 3 1 1 16 34 -8.390 -0.015 -7.044 -1.079 0.599 -1.899 0.802 D 175 173 3 176 3 0 0 16 34 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 33 - a - - - ML 177 176 3 179 3 1 1 14 33 -8.390 -0.015 -7.044 0.722 -1.181 0.432 -0.837 D 178 176 3 179 3 0 0 15 33 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 34 - C - - - ML 180 179 3 182 3 1 1 13 31 -8.390 -0.015 -7.044 -0.976 1.438 -2.264 -0.800 D 181 179 3 182 3 0 0 13 32 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 35 - C - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -1.829 1.691 -2.917 -1.482 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Entero_CRE ACC RF00048 DESC Enterovirus cis-acting replication element LENG 61 MAXL 139 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Tue Jul 9 07:59:07 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00048/CM NSEQ 56 EFFN 3.995605 CKSUM 2927476491 STATS LOCAL MSV -8.1516 0.71915 STATS LOCAL VITERBI -8.3685 0.71915 STATS LOCAL FORWARD -3.9834 0.71915 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.15665 1.57750 1.66720 1.23720 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 0.00000 * 1 1.00671 1.83558 1.21877 1.71776 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 2 0.13540 3.16975 3.18569 3.14035 2 A - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 3 3.24072 3.10264 3.77668 0.11313 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 4 1.65009 2.25739 0.79159 1.38541 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 5 0.18707 3.11016 3.03909 2.54928 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 6 0.88908 2.46225 1.04386 1.88633 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 7 1.89887 0.81353 2.64978 1.08974 7 c - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 8 0.25364 2.93779 2.38504 2.53880 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 9 0.18237 3.28296 2.51082 3.03677 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 10 1.87794 1.18910 2.58612 0.76081 10 u - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 11 3.24072 3.10264 3.77668 0.11313 11 U - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 12 0.07725 3.89514 3.56137 3.66521 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 13 3.47517 0.22480 3.29112 2.01623 13 C - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 14 0.23058 3.65898 1.91555 3.41404 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 15 3.06393 2.27785 2.86536 0.23089 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 16 0.42299 2.73657 1.52376 2.77693 16 A - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 17 3.89342 0.11978 3.74623 2.67510 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 18 0.07725 3.89514 3.56137 3.66521 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 19 2.59162 3.62557 0.14076 3.51417 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 20 2.98335 1.75508 2.78172 0.33610 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 21 3.80122 2.55941 3.63336 0.13481 21 U - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 22 3.89645 0.11962 3.74791 2.67569 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 23 0.15465 3.61660 2.44920 3.50489 23 A - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 24 0.15475 3.61561 2.44895 3.50361 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 25 3.34183 4.29258 0.07288 3.85143 25 G - - - 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 26 0.88728 2.22228 2.35782 0.95390 26 a - - - 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 27 1.94116 1.16306 0.91229 1.94959 27 g - - - 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 28 3.90693 0.11907 3.75374 2.67770 28 C - - < 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 29 0.07725 3.89513 3.56137 3.66521 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 30 0.13682 3.15645 3.17931 3.13075 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 31 0.24641 3.11179 2.15908 2.83972 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 32 2.27538 0.92784 2.85819 0.81089 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 33 0.86518 2.26878 1.04881 2.07758 33 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 34 2.17128 0.33335 3.15296 2.06573 34 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 35 2.84992 0.16902 3.65630 2.63341 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 36 2.96940 3.93165 0.10081 3.69103 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 37 2.05149 2.14863 2.19382 0.44111 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 38 0.07725 3.89513 3.56137 3.66521 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 39 3.71660 2.81660 3.42094 0.12421 39 U - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 40 3.71969 2.81715 3.42238 0.12404 40 U - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 41 2.95855 3.91373 0.10237 3.67122 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 42 0.15296 3.83245 2.39444 3.54187 42 A - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 43 0.66339 2.94971 0.99790 2.75064 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 44 3.73337 0.14959 3.47172 2.47739 44 C - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 45 3.62407 0.09461 4.16973 3.03367 45 C - - - 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 46 1.27936 1.86510 2.35344 0.75106 46 u - - - 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 47 2.95674 3.91075 0.10263 3.66792 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 48 2.99490 2.16945 2.75318 0.25878 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 49 0.29219 2.60677 2.10660 2.84811 49 A - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 50 3.62113 2.50958 3.45136 0.15054 50 U - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 51 2.52294 3.45613 0.16347 3.24325 51 G - - > 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 52 2.54534 1.87494 3.07155 0.32595 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 53 1.92093 1.18075 2.60914 0.74891 53 u - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 54 3.24072 3.10264 3.77668 0.11313 54 U - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 55 1.34036 1.82612 0.93398 1.69160 55 g - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 56 1.52545 1.04121 2.43850 1.07248 56 c - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 57 3.24072 3.10264 3.77668 0.11313 57 U - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 58 1.23489 1.35949 1.51311 1.46052 58 a - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 59 1.20388 1.32500 1.51621 1.53885 59 a - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 60 3.24072 3.10264 3.77668 0.11313 60 U - - : 1.38629 1.38629 1.38629 1.38629 0.02947 4.23208 4.23208 1.46634 0.26236 1.09861 0.40547 61 1.12514 1.63894 1.48643 1.36637 61 a - - : 1.38629 1.38629 1.38629 1.38629 0.01485 4.21745 * 1.46634 0.26236 0.00000 * //