INFERNAL1/a [1.1.5 | Sep 2023] NAME Plasmid_R1162 ACC RF00043 DESC R1162-like plasmid antisense RNA STATES 234 NODES 60 CLEN 75 W 92 ALPH RNA RF no CONS yes MAP yes DATE Wed Jul 10 07:50:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00043/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 1.863281 CKSUM 2893794619 NULL 0.000 0.000 0.000 0.000 GA 55.00 TC 55.10 NC 52.90 EFP7GF -8.5779 0.71910 ECMLC 0.53301 -10.36406 0.71309 1600000 439894 0.002728 ECMGC 0.38209 -17.15073 -3.63862 1600000 69861 0.005726 ECMLI 0.50668 -8.32596 2.57088 1600000 299934 0.004001 ECMGI 0.40298 -12.37422 0.00359 1600000 58658 0.006819 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 92 112 -6.921 -7.128 -0.054 -5.542 IL 1 1 2 1 4 5 30 95 116 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 4 30 95 115 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 5 29 92 112 -8.331 -0.019 -6.649 -1.071 1.258 -1.889 -0.213 D 4 2 3 5 3 1 27 91 111 -5.620 -0.734 -1.403 IL 5 5 3 5 3 4 29 93 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 77 - c - - MR 6 5 3 8 3 4 28 91 111 -8.331 -0.019 -6.649 -0.701 0.608 -1.485 0.588 D 7 5 3 8 3 1 25 89 109 -6.390 -1.568 -0.620 IR 8 8 3 8 3 3 28 92 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 76 - a - - MR 9 8 3 11 3 3 27 90 110 -8.331 -0.019 -6.649 0.695 -0.867 -1.033 0.427 D 10 8 3 11 3 1 25 88 108 -6.390 -1.568 -0.620 IR 11 11 3 11 3 3 27 91 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 75 - U - - MR 12 11 3 14 3 2 26 89 109 -8.331 -0.019 -6.649 -1.439 -1.444 -2.170 1.605 D 13 11 3 14 3 0 24 87 108 -6.390 -1.568 -0.620 IR 14 14 3 14 3 2 26 90 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 74 - C - - MR 15 14 3 17 2 1 25 88 108 -8.326 -0.005 -1.680 1.607 -2.502 -1.106 D 16 14 3 17 2 0 24 87 107 -4.432 -0.068 IR 17 17 3 17 2 1 25 89 109 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 6 ] - - - - - - B 18 17 3 19 123 0 24 87 107 [ BEGL 7 ] - - - - - - S 19 18 1 20 4 0 0 49 69 -0.045 -6.820 -6.227 -6.867 [ MATP 8 ] 2 36 G C - - MP 20 19 1 24 6 2 2 49 69 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -3.597 -0.790 -3.612 0.956 -4.163 -4.168 0.206 -4.040 -3.658 3.187 -4.046 0.294 -0.059 -3.548 -1.705 -2.595 ML 21 19 1 24 6 1 1 48 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 22 19 1 24 6 1 1 48 67 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 23 19 1 24 6 0 0 45 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 24 24 5 24 6 1 1 49 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 25 25 6 25 5 1 1 49 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 3 35 G C - - MP 26 25 6 30 6 2 2 47 67 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.696 -3.072 -4.791 0.231 -5.168 -4.676 -0.544 -5.030 -4.298 3.627 -4.638 -0.769 -0.931 -4.438 -2.579 -3.668 ML 27 25 6 30 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 28 25 6 30 6 1 1 46 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 29 25 6 30 6 0 0 43 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 30 30 5 30 6 1 1 47 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 31 31 6 31 5 1 1 47 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 4 34 C G - - MP 32 31 6 36 6 2 2 45 65 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.503 -4.405 -4.201 -0.641 -2.929 -4.618 3.536 -3.734 -4.248 -0.394 -4.514 -2.351 0.590 -4.575 -0.634 -3.090 ML 33 31 6 36 6 1 1 44 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 34 31 6 36 6 1 1 44 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 35 31 6 36 6 0 0 42 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 36 36 5 36 6 1 1 45 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 37 37 6 37 5 1 1 45 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 5 33 G C - - MP 38 37 6 42 6 2 2 43 63 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.696 -3.072 -4.791 0.231 -5.168 -4.676 -0.544 -5.030 -4.298 3.627 -4.638 -0.769 -0.931 -4.438 -2.579 -3.668 ML 39 37 6 42 6 1 1 43 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 40 37 6 42 6 1 1 42 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 41 37 6 42 6 0 0 41 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 42 42 5 42 6 1 1 43 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 43 43 6 43 5 1 1 43 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 6 32 C G - - MP 44 43 6 48 4 2 2 41 61 -6.921 -7.128 -0.291 -2.580 -4.503 -4.405 -4.201 -0.641 -2.929 -4.618 3.536 -3.734 -4.248 -0.394 -4.514 -2.351 0.590 -4.575 -0.634 -3.090 ML 45 43 6 48 4 1 1 42 61 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 46 43 6 48 4 1 1 41 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 47 43 6 48 4 0 0 40 60 -4.568 -4.250 -2.265 -0.520 IL 48 48 5 48 4 1 1 43 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 49 49 6 49 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 7 - a - - - ML 50 49 6 52 3 1 1 39 58 -7.729 -0.024 -6.384 0.728 -0.861 -0.289 -0.038 D 51 49 6 52 3 0 0 38 57 -7.330 -0.534 -1.721 IL 52 52 3 52 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 8 - g - - - ML 53 52 3 55 3 1 1 38 57 -8.331 -0.019 -6.649 0.028 -0.880 0.292 0.278 D 54 52 3 55 3 0 0 37 56 -5.620 -0.734 -1.403 IL 55 55 3 55 3 1 1 39 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 31 - A - - MR 56 55 3 58 5 1 1 37 56 -7.071 -0.125 -6.887 -3.990 -7.991 1.708 -2.320 -1.958 -1.858 D 57 55 3 58 5 0 0 35 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 58 58 3 58 5 1 1 37 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 9 30 G C - - MP 59 58 3 63 6 2 2 36 55 -9.059 -8.998 -0.022 -7.775 -8.055 -8.450 -4.510 -2.984 -4.590 0.352 -4.905 -4.601 -0.327 -4.814 -4.172 3.577 -4.526 -0.676 -0.719 -4.315 -2.352 -3.471 ML 60 58 3 63 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 3 63 6 1 1 34 53 -7.364 -6.093 -1.061 -6.071 -1.205 -4.285 -0.045 0.443 -0.744 0.103 D 62 58 3 63 6 0 0 32 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 10 29 g c - - MP 65 64 6 69 6 2 2 34 53 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -2.829 -0.960 -2.903 1.088 -2.845 -3.654 1.812 -3.143 -2.995 2.386 -3.465 -0.295 0.956 -2.968 -0.608 -1.939 ML 66 64 6 69 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 11 28 c g - - MP 71 70 6 75 6 2 2 32 51 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -2.570 -2.635 0.149 0.671 -2.220 -3.430 2.515 -2.738 -2.713 0.840 -3.221 -0.949 1.277 -2.836 0.457 -1.765 ML 72 70 6 75 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 12 27 G C - - MP 77 76 6 81 6 2 2 30 49 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.696 -3.072 -4.791 0.231 -5.168 -4.676 -0.544 -5.030 -4.298 3.627 -4.638 -0.769 -0.931 -4.438 -2.579 -3.668 ML 78 76 6 81 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 13 26 G C - - MP 83 82 6 87 6 2 2 28 47 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.696 -3.072 -4.791 0.231 -5.168 -4.676 -0.544 -5.030 -4.298 3.627 -4.638 -0.769 -0.931 -4.438 -2.579 -3.668 ML 84 82 6 87 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 14 25 G C - - MP 89 88 6 93 6 2 2 26 45 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -3.903 -0.588 -3.936 0.731 -4.468 -4.323 -0.042 -4.338 -3.860 3.364 -4.236 -0.407 -0.324 -3.799 -1.981 -2.903 ML 90 88 6 93 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 15 24 G C - - MP 95 94 6 99 4 2 2 24 43 -3.481 -7.128 -0.181 -5.542 -3.722 -2.697 -3.694 0.839 -3.767 -4.236 0.710 -3.929 -3.733 3.138 -4.115 -0.407 0.799 -3.664 -1.296 -2.625 ML 96 94 6 99 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 24 43 -2.118 -2.801 -0.736 -5.287 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 17 - u - - - ML 101 100 6 103 3 1 1 20 39 -7.939 -0.021 -6.593 0.156 -0.186 -0.363 0.297 D 102 100 6 103 3 0 0 19 38 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 18 - u - - - ML 104 103 3 106 3 1 1 19 37 -7.939 -0.310 -2.403 0.177 -0.795 -0.119 0.457 D 105 103 3 106 3 0 0 18 37 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 19 - u - - - ML 107 106 3 109 3 1 1 18 36 -7.655 -0.026 -6.309 0.090 -0.719 0.028 0.388 D 108 106 3 109 3 0 0 16 35 -7.566 -1.558 -0.610 IL 109 109 3 109 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 20 - g - - - ML 110 109 3 112 3 1 1 16 35 -7.763 -0.024 -6.417 -0.338 -0.666 0.912 -0.521 D 111 109 3 112 3 0 0 15 34 -7.205 -2.718 -0.249 IL 112 112 3 112 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 21 - u - - - ML 113 112 3 115 3 1 1 15 33 -7.763 -0.024 -6.417 0.333 -0.353 -0.923 0.516 D 114 112 3 115 3 0 0 14 32 -7.205 -2.718 -0.249 IL 115 115 3 115 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 22 - G - - - ML 116 115 3 118 3 1 1 13 32 -7.763 -0.024 -6.417 -0.040 -1.524 1.105 -0.919 D 117 115 3 118 3 0 0 13 31 -7.205 -0.594 -1.597 IL 118 118 3 118 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 23 - a - - - ML 119 118 3 121 2 1 1 1 1 * 0.000 0.330 -0.435 -0.296 0.250 D 120 118 3 121 2 0 0 0 0 * 0.000 IL 121 121 3 121 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 122 121 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 123 18 1 124 3 0 4 51 71 -7.939 -0.021 -6.593 IL 124 124 2 124 3 1 3 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 37 - U - - - ML 125 124 2 127 3 1 4 51 71 -7.939 -0.021 -6.593 -1.439 -1.444 -2.170 1.605 D 126 124 2 127 3 0 0 50 70 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 3 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 38 - A - - - ML 128 127 3 130 3 1 4 50 70 -7.939 -0.021 -6.593 1.184 -1.449 -0.275 -0.903 D 129 127 3 130 3 0 0 49 69 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 2 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 39 - A - - - ML 131 130 3 133 5 1 4 49 69 -7.071 -0.040 -6.887 -7.099 -7.991 1.708 -2.320 -1.958 -1.858 D 132 130 3 133 5 0 0 48 67 -4.959 -0.803 -4.221 -2.596 -2.508 IL 133 133 3 133 5 1 2 50 69 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 40 73 C G - - MP 134 133 3 138 6 2 5 48 68 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.503 -4.405 -4.201 -0.641 -2.929 -4.618 3.536 -3.734 -4.248 -0.394 -4.514 -2.351 0.590 -4.575 -0.634 -3.090 ML 135 133 3 138 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 3 138 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 3 138 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 2 48 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 41 72 C G - - MP 140 139 6 144 6 2 4 46 66 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.503 -4.405 -4.201 -0.641 -2.929 -4.618 3.536 -3.734 -4.248 -0.394 -4.514 -2.351 0.590 -4.575 -0.634 -3.090 ML 141 139 6 144 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 45 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 46 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 42 71 A U - - MP 146 145 6 150 4 2 2 44 64 -6.921 -7.128 -0.054 -5.542 -3.752 -2.794 -3.774 3.306 -4.093 -5.152 0.204 -3.819 -3.667 1.120 -4.213 -0.276 -0.213 -4.346 -1.737 -2.610 ML 147 145 6 150 4 1 1 45 64 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 4 1 1 44 64 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 149 145 6 150 4 0 0 43 63 -4.568 -4.250 -2.265 -0.520 IL 150 150 5 150 4 1 1 46 66 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 151 151 6 151 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 43 - c - - - ML 152 151 6 154 3 1 1 42 61 -7.939 -0.021 -6.593 -0.721 0.703 -1.511 0.500 D 153 151 6 154 3 0 0 41 60 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 44 - c - - - ML 155 154 3 157 3 1 1 41 60 -7.939 -0.021 -6.593 0.224 0.331 -0.534 -0.179 D 156 154 3 157 3 0 0 39 59 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 45 - A - - - ML 158 157 3 160 3 1 1 40 59 -7.939 -0.021 -6.593 1.258 -0.782 -1.230 -0.735 D 159 157 3 160 3 0 0 38 58 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 46 - a - - - ML 161 160 3 163 3 1 1 39 58 -7.939 -0.111 -3.834 0.757 0.071 -1.080 -0.346 D 162 160 3 163 3 0 0 37 57 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 47 - c - - - ML 164 163 3 166 3 1 1 38 56 -8.248 -0.020 -6.566 -0.192 0.957 -1.372 -0.326 D 165 163 3 166 3 0 0 36 55 -6.032 -1.146 -0.909 IL 166 166 3 166 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 43 ] - 70 - A - - MR 167 166 3 169 3 1 1 37 55 -8.248 -0.357 -2.213 1.664 -2.142 -1.797 -1.663 D 168 166 3 169 3 0 0 35 54 -6.933 -0.875 -1.163 IR 169 169 3 169 3 1 1 38 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 44 ] - 69 - A - - MR 170 169 3 172 3 1 1 36 55 -2.869 -0.233 -6.338 1.508 -1.665 -1.367 -1.146 D 171 169 3 172 3 0 0 34 53 -7.762 -0.427 -1.991 IR 172 172 3 172 3 1 1 36 55 -2.352 -0.391 -4.591 0.000 0.000 0.000 0.000 [ MATR 45 ] - 67 - C - - MR 173 172 3 175 3 1 1 34 53 -8.331 -0.019 -6.649 -1.680 1.607 -2.502 -1.106 D 174 172 3 175 3 0 0 33 52 -6.390 -1.568 -0.620 IR 175 175 3 175 3 1 1 35 54 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 46 ] - 66 - u - - MR 176 175 3 178 3 1 1 33 52 -8.331 -0.019 -6.649 0.162 -0.854 0.166 0.270 D 177 175 3 178 3 0 0 32 51 -6.390 -1.568 -0.620 IR 178 178 3 178 3 1 1 34 53 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 47 ] - 65 - A - - MR 179 178 3 181 5 1 1 32 51 -7.071 -0.040 -6.887 -7.099 -7.991 1.708 -2.320 -1.958 -1.858 D 180 178 3 181 5 0 0 31 50 -5.352 -0.707 -2.978 -4.409 -2.404 IR 181 181 3 181 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 48 64 u a - - MP 182 181 3 186 6 2 2 31 50 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -2.563 -2.547 -2.676 0.864 -0.254 -3.480 1.781 -2.758 -2.711 1.616 -3.236 -0.735 1.957 -2.824 -0.121 -1.732 ML 183 181 3 186 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 184 181 3 186 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 185 181 3 186 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 186 186 5 186 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 187 187 6 187 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 49 63 g c - - MP 188 187 6 192 6 2 2 29 48 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -3.439 -2.662 -3.429 0.914 -3.297 -4.093 1.109 -3.585 -3.500 2.811 -3.919 -0.415 1.392 -3.473 -0.894 -2.366 ML 189 187 6 192 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 190 187 6 192 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 191 187 6 192 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 192 192 5 192 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 193 193 6 193 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 50 ] 50 62 c g - - MP 194 193 6 198 6 2 2 27 46 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -3.652 -3.577 -3.531 0.163 -2.480 -4.106 2.748 -3.188 -3.543 0.423 -3.934 -1.551 2.193 -3.791 -0.154 -2.413 ML 195 193 6 198 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 196 193 6 198 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 197 193 6 198 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 198 198 5 198 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 199 199 6 199 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 51 ] 51 61 C G - - MP 200 199 6 204 6 2 2 25 44 -9.097 -9.036 -0.021 -7.813 -8.093 -8.488 -4.503 -4.405 -4.201 -0.641 -2.929 -4.618 3.536 -3.734 -4.248 -0.394 -4.514 -2.351 0.590 -4.575 -0.634 -3.090 ML 201 199 6 204 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 202 199 6 204 6 1 1 24 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 203 199 6 204 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 204 204 5 204 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 205 205 6 205 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 52 60 U A - - MP 206 205 6 210 4 2 2 23 42 -6.921 -7.128 -0.054 -5.542 -4.141 -3.965 -3.985 -0.263 -2.937 -4.553 1.390 -3.630 -3.990 -0.002 -4.366 -1.865 3.304 -4.294 -0.615 -2.819 ML 207 205 6 210 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 208 205 6 210 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 209 205 6 210 4 0 0 22 42 -4.568 -4.250 -2.265 -0.520 IL 210 210 5 210 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 211 211 6 211 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 53 - G - - - ML 212 211 6 214 3 1 1 21 39 -8.331 -0.019 -6.649 -0.308 -1.859 1.322 -1.264 D 213 211 6 214 3 0 0 19 38 -5.620 -0.734 -1.403 IL 214 214 3 214 3 1 1 21 40 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 54 ] - 59 - G - - MR 215 214 3 217 5 1 1 20 38 -7.071 -0.040 -6.887 -7.099 -7.991 -1.526 -2.738 1.711 -2.125 D 216 214 3 217 5 0 0 19 37 -5.352 -0.707 -2.978 -4.409 -2.404 IR 217 217 3 217 5 1 1 20 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 54 58 c g - - MP 218 217 3 222 4 2 2 18 37 -6.921 -7.128 -0.054 -5.542 -2.140 -2.271 -0.632 0.800 -2.148 -3.128 2.610 -2.565 -2.366 0.857 -1.198 -0.769 1.114 -2.451 -0.251 -1.508 ML 219 217 3 222 4 1 1 20 38 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 220 217 3 222 4 1 1 19 38 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 221 217 3 222 4 0 0 18 37 -4.568 -4.250 -2.265 -0.520 IL 222 222 5 222 4 1 1 21 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 223 223 6 223 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 55 - A - - - ML 224 223 6 226 3 1 1 15 33 -7.939 -0.021 -6.593 1.708 -2.320 -1.958 -1.858 D 225 223 6 226 3 0 0 15 33 -6.174 -1.687 -0.566 IL 226 226 3 226 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 56 - A - - - ML 227 226 3 229 3 1 1 13 31 -7.939 -0.021 -6.593 1.059 -0.391 -1.125 -0.523 D 228 226 3 229 3 0 0 13 32 -6.174 -1.687 -0.566 IL 229 229 3 229 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 57 - A - - - ML 230 229 3 232 2 1 1 1 1 * 0.000 1.708 -2.320 -1.958 -1.858 D 231 229 3 232 2 0 0 0 0 * 0.000 IL 232 232 3 232 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 59 ] - - - - - - E 233 232 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME Plasmid_R1162 ACC RF00043 DESC R1162-like plasmid antisense RNA LENG 75 MAXL 159 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jul 10 07:50:53 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00043/CM NSEQ 8 EFFN 3.003906 CKSUM 2893794619 STATS LOCAL MSV -8.3696 0.71910 STATS LOCAL VITERBI -9.2512 0.71910 STATS LOCAL FORWARD -3.5634 0.71910 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.41495 1.24758 1.24811 1.69926 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 0.00000 * 1 2.51184 0.37025 3.11023 1.69429 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 2 1.84389 2.78327 0.34495 2.63514 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 3 2.78174 3.54053 0.12980 3.48035 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 4 3.50879 0.17613 3.31651 2.35098 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 5 2.77809 3.53568 0.13045 3.47373 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 6 3.50294 0.17659 3.31349 2.34990 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.22369 4.03410 1.69972 1.46634 0.26236 1.09861 0.40547 7 0.83177 2.07909 1.58827 1.44648 7 a - - - 1.38629 1.38629 1.38629 1.38629 0.04333 3.85374 3.85374 1.46634 0.26236 0.17709 1.81832 8 1.41295 2.11676 1.10250 1.19035 8 g - - - 1.38629 1.38629 1.38629 1.38629 0.12038 4.03410 2.34634 1.46634 0.26236 1.09861 0.40547 9 2.66516 3.36636 0.15186 3.30255 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.03916 3.95287 3.95287 1.46634 0.26236 0.31471 1.30933 10 1.72037 1.38098 0.90729 1.79547 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 11 1.61119 0.84114 2.11624 1.39172 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 12 2.77234 3.52805 0.13148 3.46332 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 13 2.77257 3.52834 0.13144 3.46372 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 14 1.96335 3.07533 0.27350 2.94258 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 15 2.16678 2.46004 0.40551 2.01448 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.13635 2.20947 4.03410 0.29624 1.36105 1.09861 0.40547 16 1.28949 1.49502 1.62918 1.18989 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 17 1.27341 2.04221 1.43523 1.04321 18 u - - _ 1.38629 1.38629 1.38629 1.38629 0.29262 4.03410 1.44394 1.46634 0.26236 1.09861 0.40547 18 1.35396 1.96742 1.31720 1.09636 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04635 3.78783 3.78783 1.46634 0.26236 1.04217 0.43493 19 1.82722 1.91835 0.58840 1.98722 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04205 3.88296 3.88296 1.46634 0.26236 2.39101 0.09600 20 1.13484 1.64476 2.12388 1.00539 21 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04205 3.88296 3.88296 1.46634 0.26236 2.39101 0.09600 21 1.50587 2.72374 0.48732 2.31994 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.04205 3.88296 3.88296 1.46634 0.26236 0.20221 1.69786 22 1.14744 1.70674 1.58098 1.21969 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 23 2.16895 0.45717 2.28330 1.89257 24 C - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 24 3.14998 0.25493 2.88917 2.06710 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 25 3.60204 0.15996 3.34868 2.46011 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 26 3.56804 0.16244 3.33210 2.45335 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 27 1.82844 2.27001 0.49485 2.06862 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 28 1.99612 0.93718 1.27242 1.64894 29 c - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 29 3.17358 0.21368 3.08147 2.25716 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 30 0.11285 3.53480 3.23091 3.26948 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 31 2.62846 3.47822 0.15232 3.26399 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 32 3.65394 0.15635 3.37343 2.47007 33 C - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 33 2.62777 3.47718 0.15247 3.26280 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 34 3.64611 0.15688 3.36974 2.46859 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 35 2.86128 0.39726 2.58709 1.63268 36 C - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 36 2.89075 2.80783 3.41796 0.16093 37 U - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 37 0.47250 2.66484 1.57182 2.30978 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 38 0.11285 3.53480 3.23091 3.26948 39 A - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 39 3.51880 0.17534 3.32165 2.35281 40 C - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 40 3.51333 0.17577 3.31884 2.35181 41 C - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 41 0.23831 3.14733 2.10106 3.06305 42 A - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 42 2.13157 0.77792 2.71151 1.03408 43 c - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 43 1.24118 1.06580 1.78087 1.61942 44 c - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 44 0.40663 1.99435 2.49292 2.15987 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 45 0.78484 1.27130 2.32582 1.79796 46 a - - - 1.38629 1.38629 1.38629 1.38629 0.11471 4.03410 2.40046 1.46634 0.26236 1.09861 0.40547 46 1.64627 0.55769 2.63177 1.81554 47 C - - - 1.38629 1.38629 1.38629 1.38629 0.03894 3.95833 3.95833 1.46634 0.26236 0.32962 1.27011 47 2.03544 1.27692 1.39354 1.07210 48 u - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 48 2.08197 2.12003 0.61034 1.55059 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 49 2.69208 0.75034 2.45410 0.98320 50 c - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 50 3.49876 0.17692 3.31133 2.34912 51 C - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 51 3.31748 2.17132 3.10634 0.21696 52 U - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 52 1.74290 3.02895 0.34919 2.64002 53 G - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 53 1.64658 0.92493 1.65181 1.51854 54 c - - < 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 54 0.11285 3.53480 3.23091 3.26948 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 55 0.55039 1.65595 2.38350 1.96514 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 56 0.11285 3.53480 3.23091 3.26948 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 57 1.74849 2.02139 0.64350 1.78354 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 58 2.99761 3.91275 0.10596 3.48514 59 G - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 59 0.24588 3.29640 2.00786 3.06425 60 A - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 60 2.62964 3.47999 0.15207 3.26603 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 61 1.10033 2.62324 0.67534 2.45703 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 62 1.68502 0.67336 1.94825 1.81989 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 63 1.03663 1.50128 1.33777 1.83211 64 a - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 64 0.11285 3.53480 3.23091 3.26948 65 A - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 65 1.29440 2.08940 1.20599 1.19475 66 u - - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 66 3.20322 0.14180 3.77497 2.67898 67 C - - - 1.38629 1.38629 1.38629 1.38629 0.56037 1.84530 1.30556 0.21076 1.66056 1.09861 0.40547 67 0.21606 2.93688 2.69114 2.61076 69 A - - - 1.38629 1.38629 1.38629 1.38629 0.15682 3.74198 2.10834 1.46634 0.26236 0.12277 2.15817 68 0.13301 3.38081 3.09121 3.09939 70 A - - - 1.38629 1.38629 1.38629 1.38629 0.03894 3.95833 3.95833 1.46634 0.26236 0.32962 1.27011 69 3.28467 2.42966 2.95495 0.19553 71 U - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 70 2.63182 3.48326 0.15160 3.26978 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 71 2.63205 3.48361 0.15155 3.27019 73 G - - > 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 72 3.20322 0.14180 3.77497 2.67898 74 C - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 73 2.89075 2.80783 3.41796 0.16093 75 U - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 74 0.84492 2.12633 2.24694 1.06301 76 a - - : 1.38629 1.38629 1.38629 1.38629 0.03605 4.03410 4.03410 1.46634 0.26236 1.09861 0.40547 75 2.10948 0.85159 2.68358 0.95804 77 c - - : 1.38629 1.38629 1.38629 1.38629 0.01818 4.01624 * 1.46634 0.26236 0.00000 * //