INFERNAL1/a [1.1.5 | Sep 2023] NAME DicF ACC RF00039 DESC DicF RNA STATES 160 NODES 43 CLEN 52 W 78 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 01:13:42 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00039/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 5 EFFN 4.995117 CKSUM 1458131470 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 50.00 NC 43.50 EFP7GF -9.2236 0.72298 ECMLC 0.61103 -8.26982 1.89097 1600000 596391 0.002012 ECMGC 0.45556 -15.66658 -2.46203 1600000 163885 0.002441 ECMLI 0.62368 -6.90094 2.64241 1600000 461403 0.002601 ECMGI 0.49750 -12.13224 -0.59336 1600000 124496 0.003213 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 78 111 -7.852 -8.059 -0.028 -6.473 IL 1 1 2 1 4 1 12 80 113 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 11 80 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 11 78 111 -8.819 -0.011 -7.473 -3.081 -2.824 -3.862 1.877 D 4 2 3 5 3 0 7 76 109 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 11 79 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 11 77 110 -8.819 -0.011 -7.473 -1.257 -1.586 -0.542 1.357 D 7 5 3 8 3 0 6 75 108 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 10 78 111 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - c - - - ML 9 8 3 11 3 1 10 76 109 -8.819 -0.011 -7.473 -1.538 0.811 -2.413 0.777 D 10 8 3 11 3 0 5 74 107 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 9 77 110 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - u - - - ML 12 11 3 14 3 1 9 75 108 -8.819 -0.011 -7.473 -0.926 -1.506 0.521 0.754 D 13 11 3 14 3 0 5 73 106 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 9 76 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - g - - - ML 15 14 3 17 3 1 8 74 107 -8.819 -0.011 -7.473 -0.941 -1.564 0.711 0.589 D 16 14 3 17 3 0 4 72 105 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 8 75 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - G - - - ML 18 17 3 20 3 1 7 73 106 -8.819 -0.011 -7.473 -3.200 -4.607 1.920 -3.942 D 19 17 3 20 3 0 3 71 104 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 7 74 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - U - - - ML 21 20 3 23 3 1 6 72 105 -8.819 -0.293 -2.463 -3.081 -2.824 -3.862 1.877 D 22 20 3 23 3 0 3 70 103 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 7 73 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 7 71 104 -8.540 -0.014 -7.194 0.229 -2.179 1.191 -1.627 D 25 23 3 26 3 0 2 70 103 -8.152 -0.278 -2.543 IL 26 26 3 26 3 1 5 72 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - a - - - ML 27 26 3 29 3 1 6 70 103 -8.819 -0.011 -7.473 0.946 -2.348 0.673 -1.827 D 28 26 3 29 3 0 0 68 101 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 4 71 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - c - - - ML 30 29 3 32 3 1 6 69 102 -8.819 -0.011 -7.473 -1.538 0.811 -2.413 0.777 D 31 29 3 32 3 0 0 67 100 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 3 70 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - a - - - ML 33 32 3 35 3 1 5 68 101 -8.819 -0.011 -7.473 0.562 -0.359 0.188 -0.724 D 34 32 3 35 3 0 0 66 99 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 3 69 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - U - - - ML 36 35 3 38 3 1 4 67 100 -8.819 -0.011 -7.473 -1.763 -0.246 -2.548 1.428 D 37 35 3 38 3 0 0 65 98 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 2 68 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - U - - - ML 39 38 3 41 3 1 3 66 99 -8.819 -0.011 -7.473 -3.081 -2.824 -3.862 1.877 D 40 38 3 41 3 0 0 64 97 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 2 67 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - U - - - ML 42 41 3 44 3 1 3 65 98 -9.167 -0.011 -7.484 -3.081 -2.824 -3.862 1.877 D 43 41 3 44 3 0 0 64 97 -5.620 -0.734 -1.403 IL 44 44 3 44 3 1 1 66 98 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 55 - C - - MR 45 44 3 47 5 1 3 64 97 -7.864 -0.023 -7.679 -7.891 -8.783 -1.865 1.366 -2.790 0.005 D 46 44 3 47 5 0 0 62 95 -5.352 -0.707 -2.978 -4.409 -2.404 IR 47 47 3 47 5 1 1 64 97 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 54 G C - - MP 48 47 3 52 6 2 3 63 96 -9.521 -9.461 -0.016 -8.237 -8.517 -8.912 -6.340 -3.889 -6.810 -0.955 -7.409 -5.284 -2.382 -7.016 -5.240 3.865 -5.495 -1.687 -2.743 -5.470 -4.543 -5.666 ML 49 47 3 52 6 1 1 61 94 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 3 52 6 1 1 61 94 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 3 52 6 0 0 58 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 62 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 62 95 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 53 G C - - MP 54 53 6 58 6 2 3 61 94 -9.521 -9.461 -0.016 -8.237 -8.517 -8.912 -6.340 -3.889 -6.810 -0.955 -7.409 -5.284 -2.382 -7.016 -5.240 3.865 -5.495 -1.687 -2.743 -5.470 -4.543 -5.666 ML 55 53 6 58 6 1 1 59 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 59 92 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 56 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 60 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 60 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 52 C G - - MP 60 59 6 64 6 2 3 59 92 -9.521 -9.461 -0.016 -8.237 -8.517 -8.912 -4.963 -4.945 -4.636 -1.024 -3.247 -5.041 3.324 -4.059 -4.649 -0.862 -4.942 -2.863 1.914 -4.997 -0.893 -3.449 ML 61 59 6 64 6 1 1 57 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 57 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 54 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 58 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 58 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 18 51 G C - - MP 66 65 6 70 6 2 3 57 90 -9.521 -9.461 -0.016 -8.237 -8.517 -8.912 -6.340 -3.889 -6.810 -0.955 -7.409 -5.284 -2.382 -7.016 -5.240 3.865 -5.495 -1.687 -2.743 -5.470 -4.543 -5.666 ML 67 65 6 70 6 1 1 55 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 55 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 52 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 56 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 56 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 19 50 G C - - MP 72 71 6 76 6 2 2 55 88 -9.521 -9.461 -0.161 -3.352 -8.517 -8.912 -6.340 -3.889 -6.810 -0.955 -7.409 -5.284 -2.382 -7.016 -5.240 3.865 -5.495 -1.687 -2.743 -5.470 -4.543 -5.666 ML 73 71 6 76 6 1 1 54 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 53 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 51 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 55 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 54 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 49 u g - - MP 78 77 6 82 6 2 2 53 86 -9.378 -9.317 -0.017 -8.094 -8.373 -8.768 -4.898 -4.991 -4.480 -1.219 -3.045 -4.795 2.485 -3.889 -4.538 -1.098 -4.773 -3.115 0.386 -4.888 2.914 -3.367 ML 79 77 6 82 6 1 1 52 85 -7.670 -8.016 -0.364 -2.425 -7.866 -5.396 -0.994 1.339 -1.779 -0.564 MR 80 77 6 82 6 1 1 52 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 49 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 53 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 52 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 21 48 A U - - MP 84 83 6 88 4 2 2 51 84 -7.852 -8.059 -0.028 -6.473 -5.419 -4.168 -5.142 3.837 -6.506 -7.800 -2.116 -5.081 -5.188 -0.706 -5.802 -1.471 -2.494 -6.613 -4.036 -4.029 ML 85 83 6 88 4 1 1 51 83 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 4 1 1 50 83 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 87 83 6 88 4 0 0 49 82 -4.568 -4.250 -2.265 -0.520 IL 88 88 5 88 4 1 1 52 85 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 89 89 6 89 3 1 1 51 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - U - - - ML 90 89 6 92 3 1 1 49 82 -9.167 -0.011 -7.484 -3.081 -2.824 -3.862 1.877 D 91 89 6 92 3 0 0 48 81 -5.620 -0.734 -1.403 IL 92 92 3 92 3 1 1 50 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 47 - c - - MR 93 92 3 95 3 1 1 48 81 -9.167 -0.011 -7.484 -0.791 0.625 -0.423 0.181 D 94 92 3 95 3 0 0 46 79 -6.390 -1.568 -0.620 IR 95 95 3 95 3 1 1 49 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 46 - U - - MR 96 95 3 98 3 1 1 47 80 -9.167 -0.011 -7.484 -3.081 -2.824 -3.862 1.877 D 97 95 3 98 3 0 0 45 78 -6.390 -1.568 -0.620 IR 98 98 3 98 3 1 1 48 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 45 - a - - MR 99 98 3 101 5 1 1 46 79 -7.864 -0.023 -7.679 -7.891 -8.783 0.735 0.605 -1.828 -0.909 D 100 98 3 101 5 0 0 45 78 -5.352 -0.707 -2.978 -4.409 -2.404 IR 101 101 3 101 5 1 1 46 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 23 44 C G - - MP 102 101 3 106 6 2 2 45 78 -9.521 -9.461 -0.166 -3.303 -8.517 -8.912 -6.433 -6.499 -5.771 -2.676 -4.203 -5.934 3.874 -5.222 -5.960 -2.602 -5.937 -4.560 -0.967 -6.375 -2.036 -4.764 ML 103 101 3 106 6 1 1 44 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 104 101 3 106 6 1 1 43 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 105 101 3 106 6 0 0 40 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 106 106 5 106 6 1 1 45 78 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 107 107 6 107 5 1 1 44 77 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 24 43 A U - - MP 108 107 6 112 6 2 2 43 76 -9.372 -9.312 -0.018 -8.088 -8.368 -8.763 -4.902 -3.707 -4.770 3.751 -5.760 -6.979 -1.387 -4.736 -4.700 -0.135 -5.298 -1.047 -1.790 -5.928 -3.319 -3.597 ML 109 107 6 112 6 1 1 42 75 -7.702 -8.048 -0.355 -2.457 -7.898 -5.428 1.548 -1.769 -1.461 -1.258 MR 110 107 6 112 6 1 1 41 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 6 112 6 0 0 38 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 112 112 5 112 6 1 1 43 76 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 42 75 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 25 42 G C - - MP 114 113 6 118 6 2 2 41 74 -9.521 -9.461 -0.016 -8.237 -8.517 -8.912 -6.340 -3.889 -6.810 -0.955 -7.409 -5.284 -2.382 -7.016 -5.240 3.865 -5.495 -1.687 -2.743 -5.470 -4.543 -5.666 ML 115 113 6 118 6 1 1 39 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 116 113 6 118 6 1 1 39 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 117 113 6 118 6 0 0 37 70 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 118 118 5 118 6 1 1 41 74 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 119 119 6 119 5 1 1 40 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 26 41 u a - - MP 120 119 6 124 4 2 2 39 72 -7.852 -2.471 -0.687 -2.364 -3.486 -3.557 -3.525 -0.105 -2.837 -4.234 1.298 -3.438 -3.549 -0.021 -4.027 -1.789 2.691 -3.730 1.047 1.030 ML 121 119 6 124 4 1 1 37 70 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 122 119 6 124 4 1 1 37 70 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 123 119 6 124 4 0 0 36 69 -4.568 -4.250 -2.265 -0.520 IL 124 124 5 124 4 1 1 40 73 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 125 125 6 125 3 1 1 40 73 -0.807 -1.285 -5.791 0.000 0.000 0.000 0.000 [ MATL 31 ] 27 - U - - - ML 126 125 6 128 3 1 1 24 43 -8.540 -0.014 -7.194 -2.580 -2.395 -3.351 1.826 D 127 125 6 128 3 0 0 22 41 -8.152 -3.665 -0.124 IL 128 128 3 128 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 28 - U - - - ML 129 128 3 131 3 1 1 23 42 -8.540 -0.014 -7.194 -2.580 -2.395 -3.351 1.826 D 130 128 3 131 3 0 0 21 40 -8.152 -3.665 -0.124 IL 131 131 3 131 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 29 - U - - - ML 132 131 3 134 3 1 1 22 40 -8.540 -0.014 -7.194 -2.580 -2.395 -3.351 1.826 D 133 131 3 134 3 0 0 21 39 -8.152 -0.278 -2.543 IL 134 134 3 134 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 30 - A - - - ML 135 134 3 137 3 1 1 20 39 -8.819 -0.011 -7.473 1.363 -1.739 -1.845 -0.235 D 136 134 3 137 3 0 0 20 39 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 31 - C - - - ML 138 137 3 140 3 1 1 19 38 -8.819 -0.011 -7.473 -0.220 1.298 -2.340 -1.041 D 139 137 3 140 3 0 0 19 38 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 32 - U - - - ML 141 140 3 143 3 1 1 18 37 -8.819 -0.011 -7.473 -3.081 -2.824 -3.862 1.877 D 142 140 3 143 3 0 0 18 37 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 33 - C - - - ML 144 143 3 146 3 1 1 17 35 -8.819 -0.011 -7.473 -1.890 1.385 -2.815 -0.034 D 145 143 3 146 3 0 0 17 35 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - c - - - ML 147 146 3 149 3 1 1 16 34 -8.819 -0.011 -7.473 -0.054 0.668 -1.661 0.178 D 148 146 3 149 3 0 0 16 34 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 35 - G - - - ML 150 149 3 152 3 1 1 14 33 -8.819 -0.011 -7.473 -0.099 -2.657 1.423 -2.140 D 151 149 3 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 36 - U - - - ML 153 152 3 155 3 1 1 12 31 -8.819 -0.011 -7.473 -0.203 -1.554 -1.987 1.344 D 154 152 3 155 3 0 0 13 32 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 37 - u - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 -0.012 -0.256 0.079 0.156 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 42 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME DicF ACC RF00039 DESC DicF RNA LENG 52 MAXL 127 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 01:13:43 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00039/CM NSEQ 5 EFFN 4.516602 CKSUM 1458131470 STATS LOCAL MSV -7.3498 0.72298 STATS LOCAL VITERBI -8.4616 0.72298 STATS LOCAL FORWARD -3.4152 0.72298 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.85375 1.40115 1.39824 1.04980 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 0.00000 * 1 3.39506 3.23443 3.93407 0.09705 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 2 2.17920 2.41596 1.75996 0.46915 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 3 2.37157 0.84424 2.96974 0.85458 3 c - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 4 1.96916 2.36981 1.04589 0.87815 4 u - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 5 1.97840 2.40780 0.91753 0.98835 5 g - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 6 3.48694 4.45138 0.06248 4.00034 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 7 3.39506 3.23443 3.93407 0.09705 7 U - - : 1.38629 1.38629 1.38629 1.38629 0.21729 4.27667 1.70695 1.46634 0.26236 1.09861 0.40547 8 1.22550 2.81910 0.58200 2.43097 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.03394 4.09331 4.09331 1.46634 0.26236 0.14247 2.01904 9 0.74452 2.91558 0.93539 2.54549 9 a - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 10 2.37157 0.84424 2.96974 0.85458 10 c - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 11 1.00328 1.64002 1.26834 1.84484 11 a - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 12 2.51726 1.55443 3.05891 0.41389 12 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 13 3.39506 3.23443 3.93407 0.09705 13 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 14 3.39506 3.23443 3.93407 0.09705 14 U - - : 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 15 3.13540 4.03753 0.08302 3.98746 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 16 3.13295 4.03377 0.08331 3.98235 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 17 3.13233 0.47357 2.91431 1.27522 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 18 3.12926 4.02812 0.08375 3.97470 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 19 3.12789 4.02602 0.08392 3.97186 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 20 3.04247 0.94468 2.98760 0.66734 20 U - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 21 0.13844 3.70692 2.57525 3.55457 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 22 3.39506 3.23443 3.93407 0.09705 22 U - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 23 4.08255 0.10000 3.94755 2.83025 23 C - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 24 0.20384 3.27541 2.27451 3.12904 24 A - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 25 3.03459 3.88672 0.09569 3.78771 25 G - - < 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 26 2.43473 1.69789 2.28410 0.46610 26 U - - < 1.38629 1.38629 1.38629 1.38629 0.21729 4.27667 1.70695 1.46634 0.26236 1.09861 0.40547 27 3.04986 2.94130 3.58143 0.13696 27 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09331 4.09331 1.46634 0.26236 2.71218 0.06870 28 3.04985 2.94130 3.58143 0.13696 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09331 4.09331 1.46634 0.26236 2.71218 0.06870 29 3.04986 2.94130 3.58143 0.13696 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03394 4.09331 4.09331 1.46634 0.26236 0.14247 2.01904 30 0.46014 2.52814 2.59749 1.53927 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 31 1.52501 0.51446 2.91381 2.03801 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 32 3.39506 3.23443 3.93407 0.09705 32 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 33 2.60735 0.44624 3.23959 1.39811 33 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 34 1.41572 0.94408 2.48635 1.25527 34 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 35 1.44727 3.14160 0.41661 2.77582 35 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 36 1.51663 2.39593 2.69103 0.47538 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 37 1.38639 1.56682 1.34134 1.27361 37 u - - _ 1.38629 1.38629 1.38629 1.38629 0.21013 1.73935 4.27667 1.12015 0.39487 1.09861 0.40547 38 0.89747 2.46287 1.21461 1.55881 41 a - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 39 4.12534 0.10166 3.88665 2.81362 42 C - - > 1.38629 1.38629 1.38629 1.38629 0.21729 4.27667 1.70695 1.46634 0.26236 1.09861 0.40547 40 3.49847 2.60798 3.17443 0.15753 43 U - - > 1.38629 1.38629 1.38629 1.38629 0.03394 4.09331 4.09331 1.46634 0.26236 0.14247 2.01904 41 3.12348 4.12706 0.08431 3.87657 44 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 42 0.89019 0.98891 2.58173 1.95336 45 a - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 43 3.39506 3.23443 3.93407 0.09705 46 U - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 44 1.88798 0.97514 1.68208 1.25352 47 c - - - 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 45 3.89210 2.98492 3.61804 0.10290 48 U - - > 1.38629 1.38629 1.38629 1.38629 0.21013 4.27667 1.73935 1.46634 0.26236 1.09861 0.40547 46 2.26026 3.17238 0.22105 2.95469 49 G - - > 1.38629 1.38629 1.38629 1.38629 0.03370 4.10023 4.10023 1.46634 0.26236 0.14683 1.99100 47 4.12203 0.10179 3.88495 2.81302 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 48 4.12854 0.10152 3.88828 2.81420 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 49 1.39639 3.08124 0.42926 2.88928 52 G - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 50 4.15038 0.10063 3.89934 2.81813 53 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 51 4.16966 0.09986 3.90901 2.82153 54 C - - > 1.38629 1.38629 1.38629 1.38629 0.02817 4.27667 4.27667 1.46634 0.26236 1.09861 0.40547 52 2.59106 0.45941 3.22297 1.37212 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.01418 4.26268 * 1.46634 0.26236 0.00000 * //