INFERNAL1/a [1.1.4 | Dec 2020] NAME SECIS_1 ACC RF00031 DESC Selenocysteine insertion sequence 1 STATES 196 NODES 48 CLEN 64 W 102 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:11:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 61 EFFN 61.000000 CKSUM 4053333496 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -6.6669 0.74522 ECMLC 0.62681 -5.36152 3.23347 1600000 262358 0.004574 ECMGC 0.42123 -14.99077 -2.55360 1600000 75390 0.005306 ECMLI 0.61389 -3.14575 5.45159 1600000 235124 0.005104 ECMGI 0.43198 -11.33117 0.43594 1600000 64514 0.006200 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 102 142 -11.995 -11.934 -0.031 -5.645 -10.991 -11.386 IL 1 1 2 1 6 4 24 103 143 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 4 24 103 143 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 93 g c - - MP 3 2 3 7 6 8 28 102 142 -11.967 -11.906 -0.003 -10.683 -10.963 -11.358 -5.758 -4.888 -5.707 0.060 -5.780 -1.002 1.680 -5.989 -5.918 2.381 -6.309 0.898 1.881 -2.180 -3.264 -4.637 ML 4 2 3 7 6 4 24 101 142 -0.598 -8.136 -2.850 -2.545 -7.986 -5.515 1.585 -1.874 -1.556 -1.371 MR 5 2 3 7 6 3 22 99 140 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 18 96 137 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 4 25 101 141 -3.847 -4.110 -0.269 -5.765 -6.542 -6.202 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 4 24 101 141 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 3 92 u a - - MP 9 8 6 13 6 8 27 100 140 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -3.449 -3.660 0.576 1.252 -3.624 -4.497 0.562 -0.423 -3.711 0.175 -4.284 -1.375 2.525 -1.328 -0.147 -0.134 ML 10 8 6 13 6 3 22 98 138 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 3 22 97 138 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 18 94 135 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 3 23 99 139 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 3 23 99 139 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 4 91 c g - - MP 15 14 6 19 6 7 25 98 138 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -2.223 -5.666 -5.862 -1.776 -5.025 -6.705 2.298 -5.617 -5.790 1.763 0.091 -3.489 1.983 -6.030 0.387 -0.656 ML 16 14 6 19 6 3 21 96 136 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 3 21 95 136 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 18 92 132 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 3 22 97 137 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 3 22 97 137 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 5 90 u a - - MP 21 20 6 25 6 7 23 96 136 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -5.399 -4.557 -5.375 1.114 -5.886 -1.949 -0.325 -5.892 -5.649 2.284 -6.036 0.325 2.476 -1.975 -3.515 -0.762 ML 22 20 6 25 6 3 20 93 134 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 2 20 93 133 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 17 90 130 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 3 21 95 135 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 3 21 95 135 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 89 c g - - MP 27 26 6 31 4 5 21 94 134 -11.100 -1.168 -0.854 -9.721 -6.743 -6.490 -6.689 -2.354 -0.277 -7.440 2.799 -2.042 -6.577 1.739 0.190 -4.105 1.602 -6.903 -3.013 -5.313 ML 28 26 6 31 4 2 19 90 131 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 18 90 130 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 17 89 129 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 3 20 92 133 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 3 20 93 134 -0.707 -1.431 -5.942 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - a - - - ML 33 32 6 35 3 3 18 87 127 -11.989 -0.001 -10.643 0.417 -0.459 -0.700 0.403 D 34 32 6 35 3 0 17 86 126 -8.074 -0.295 -2.465 IL 35 35 3 35 3 1 18 88 128 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - U - - - ML 36 35 3 38 3 2 17 86 126 -12.015 -0.001 -10.669 -1.561 -0.103 -0.603 1.051 D 37 35 3 38 3 0 15 85 124 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 17 87 127 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - u - - - ML 39 38 3 41 3 1 16 85 125 -2.662 -1.227 -1.270 -0.802 0.225 -0.819 0.758 D 40 38 3 41 3 0 15 84 124 -6.174 -1.687 -0.566 IL 41 41 3 41 3 2 17 86 126 -2.305 -0.338 -7.213 0.000 0.000 0.000 0.000 [ MATL 9 ] 12 - u - - - ML 42 41 3 44 3 1 16 84 124 -11.244 -0.002 -9.898 0.169 0.109 -1.770 0.589 D 43 41 3 44 3 0 14 83 123 -12.184 -0.016 -6.576 IL 44 44 3 44 3 1 15 85 125 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 13 - A - - - ML 45 44 3 47 3 1 15 83 123 -12.015 -0.001 -10.669 1.792 -6.605 -0.958 -6.497 D 46 44 3 47 3 0 11 81 121 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 14 84 124 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 14 - U - - - ML 48 47 3 50 3 1 14 82 122 -12.015 -0.001 -10.669 -8.273 -7.409 -9.333 1.996 D 49 47 3 50 3 0 11 80 120 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 14 83 123 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 15 - G - - - ML 51 50 3 53 3 1 13 81 121 -12.015 -0.001 -10.669 -6.637 -8.404 1.993 -7.398 D 52 50 3 53 3 0 10 79 119 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 13 82 122 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 16 - A - - - ML 54 53 3 56 3 1 12 80 120 -12.015 -0.001 -10.669 1.995 -8.138 -7.404 -7.537 D 55 53 3 56 3 0 10 79 119 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 12 81 121 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 17 - u - - - ML 57 56 3 59 3 1 11 79 119 -12.314 -0.217 -2.843 -0.343 0.238 -0.295 0.283 D 58 56 3 59 3 0 9 78 118 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 11 80 120 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 81 - G - - MR 60 59 3 62 3 1 10 79 118 -12.099 -0.027 -5.759 -1.266 -1.168 1.096 0.003 D 61 59 3 62 3 0 8 77 117 -10.637 -0.589 -1.580 IR 62 62 3 62 3 1 10 79 119 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 80 - u - - MR 63 62 3 65 3 1 9 78 117 -12.226 -0.001 -10.544 -0.459 0.431 -3.109 0.855 D 64 62 3 65 3 0 8 76 116 -9.508 -0.115 -3.738 IR 65 65 3 65 3 1 9 78 118 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 79 - u - - MR 66 65 3 68 3 1 8 77 116 -12.314 -0.001 -10.632 -1.374 0.622 -3.553 0.993 D 67 65 3 68 3 0 6 75 115 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 8 77 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 78 - c - - MR 69 68 3 71 3 1 7 76 115 -12.314 -0.611 -1.535 -0.537 0.332 0.195 -0.140 D 70 68 3 71 3 0 5 74 114 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 9 76 116 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 77 - g - - MR 72 71 3 74 3 1 8 75 115 -1.688 -0.538 -10.023 0.457 -1.722 0.732 -0.594 D 73 71 3 74 3 0 4 73 113 -11.903 -0.021 -6.133 IR 74 74 3 74 3 1 7 75 115 -2.373 -0.317 -7.941 0.000 0.000 0.000 0.000 [ MATR 20 ] - 74 - U - - MR 75 74 3 77 3 1 8 73 113 -12.314 -0.001 -10.632 -0.683 -2.550 -0.483 1.317 D 76 74 3 77 3 0 0 71 111 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 3 74 114 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 73 - A - - MR 78 77 3 80 3 1 7 72 112 -12.314 -0.001 -10.632 1.944 -2.960 -6.488 -6.253 D 79 77 3 80 3 0 0 70 110 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 73 113 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 72 - G - - MR 81 80 3 83 3 1 7 71 111 -12.314 -0.001 -10.632 -6.637 -8.404 1.993 -7.398 D 82 80 3 83 3 0 0 70 109 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 2 72 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 71 - U - - MR 84 83 3 86 5 1 6 70 110 -10.961 -0.003 -10.776 -10.988 -11.880 -0.926 -0.965 -0.631 1.211 D 85 83 3 86 5 0 0 69 109 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 71 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 70 G C - - MP 87 86 3 91 6 2 6 69 109 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -6.216 -0.511 -6.049 1.579 -7.195 -6.650 -0.192 -6.718 -6.439 3.234 -6.701 0.744 -2.526 -5.915 -4.271 -5.004 ML 88 86 3 91 6 1 1 68 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 67 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 64 104 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 69 109 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 69 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 69 a u - - MP 93 92 6 97 6 2 6 67 107 -11.995 -5.390 -0.037 -10.711 -10.991 -11.386 -6.059 -4.708 -5.881 2.607 -6.960 -6.480 -0.525 -6.553 -6.310 2.526 -6.561 0.437 0.002 -5.740 -0.121 -4.842 ML 94 92 6 97 6 1 1 66 105 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 65 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 62 102 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 67 107 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 67 106 -3.437 -0.222 -6.948 -5.116 -6.222 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 67 c g - - MP 99 98 6 103 6 2 5 65 105 -11.995 -3.307 -0.156 -10.711 -10.991 -11.386 -4.875 -0.503 -5.018 0.088 -0.769 -5.867 2.671 -5.070 -5.020 0.302 -5.574 -0.165 1.907 -5.171 -0.452 -1.059 ML 100 98 6 103 6 1 1 63 103 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 63 103 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 60 100 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 65 104 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 2 64 104 -4.853 -0.079 -8.364 -6.531 -7.637 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 65 c g - - MP 105 104 6 109 6 2 5 63 103 -11.995 -4.918 -0.051 -10.711 -10.991 -11.386 -5.906 -5.735 -5.962 1.737 -5.066 -6.807 2.519 -1.078 -5.877 1.132 -6.404 -0.983 0.998 -6.131 0.672 -4.700 ML 106 104 6 109 6 1 1 61 101 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 61 101 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 58 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 63 102 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 62 102 -3.700 -0.183 -7.211 -5.379 -6.484 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 63 g c - - MP 111 110 6 115 6 2 5 61 101 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -4.911 -4.558 -1.436 1.961 -5.010 -5.774 0.810 -5.304 -5.126 2.115 -5.616 -0.262 1.981 -5.059 -1.550 -1.727 ML 112 110 6 115 6 1 1 59 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 59 99 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 56 96 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 61 100 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 60 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 62 g c - - MP 117 116 6 121 6 2 5 59 99 -11.995 -11.934 -0.019 -6.444 -10.991 -11.386 -5.988 -5.098 -5.919 1.680 -5.781 -6.624 2.105 -6.075 -6.094 2.143 -6.487 -0.075 1.371 -1.910 -3.210 -4.774 ML 118 116 6 121 6 1 1 58 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 57 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 54 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 59 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 58 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 61 u a - - MP 123 122 6 127 6 2 5 57 97 -11.979 -11.919 -0.003 -10.695 -10.975 -11.370 -4.569 -4.637 -4.723 1.928 -4.424 -5.568 1.235 -4.872 -4.753 1.615 -5.307 -2.934 1.942 -0.459 0.163 -0.570 ML 124 122 6 127 6 1 1 56 96 -7.301 -7.647 -0.490 -2.056 -7.497 -5.026 -0.569 -0.752 -1.232 1.206 MR 125 122 6 127 6 1 1 55 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 52 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 57 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 56 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 60 c g - - MP 129 128 6 133 6 2 5 55 95 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -4.524 -4.623 -4.684 1.632 -0.919 -5.532 2.073 -4.833 -4.710 1.553 -1.113 0.059 1.257 -4.831 0.015 -3.790 ML 130 128 6 133 6 1 1 53 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 53 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 50 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 55 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 54 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 26 59 c g - - MP 135 134 6 139 6 2 4 53 93 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -6.321 -6.044 -6.325 1.151 -0.071 -7.162 2.725 -5.868 -6.193 0.314 -6.706 -3.639 1.452 -6.508 1.019 -4.927 ML 136 134 6 139 6 1 1 51 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 51 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 47 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 53 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 52 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 27 58 u g - - MP 141 140 6 145 4 2 2 51 91 -3.547 -1.426 -0.984 -4.766 -3.389 -2.300 -0.071 -0.416 -3.578 -4.439 1.836 -3.938 -1.208 0.054 0.490 -0.030 0.645 -1.368 1.887 -0.454 ML 142 140 6 145 4 1 1 47 86 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 47 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 45 85 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 45 84 -4.616 -5.299 -0.106 -7.785 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 51 91 -0.668 -1.438 -9.470 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - u - - - ML 147 146 6 149 3 1 1 28 46 -11.963 -0.001 -10.617 -0.569 -1.051 0.377 0.628 D 148 146 6 149 3 0 0 27 46 -8.859 -0.164 -3.250 IL 149 149 3 149 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - A - - - ML 150 149 3 152 3 1 1 27 45 -12.015 -0.001 -10.669 1.840 -1.948 -5.367 -2.879 D 151 149 3 152 3 0 0 27 46 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - A - - - ML 153 152 3 155 3 1 1 26 44 -12.015 -0.021 -6.138 1.995 -8.138 -7.404 -7.537 D 154 152 3 155 3 0 0 26 45 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - A - - - ML 156 155 3 158 3 1 1 25 43 -5.391 -0.476 -1.960 1.910 -3.754 -2.757 -5.564 D 157 155 3 158 3 0 0 22 41 -7.798 -3.311 -0.160 IL 158 158 3 158 3 1 1 25 44 -2.364 -0.366 -5.065 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - c - - - ML 159 158 3 161 3 1 1 24 42 -11.869 -0.002 -10.187 -0.823 0.664 -0.569 0.234 D 160 158 3 161 3 0 0 22 40 -10.313 -2.586 -0.264 IL 161 161 3 161 3 1 1 25 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 49 - c - - MR 162 161 3 164 5 1 1 23 41 -1.811 -0.488 -10.409 -10.621 -11.512 -0.609 0.722 -2.510 0.604 D 163 161 3 164 5 0 0 22 40 -1.657 -0.595 -7.101 -8.531 -6.526 IR 164 164 3 164 5 1 1 22 41 -3.153 -0.184 -9.783 -7.951 -9.056 0.000 0.000 0.000 0.000 [ MATP 40 ] 35 46 c g - - MP 165 164 3 169 6 2 2 21 40 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -6.197 -5.929 -6.215 0.489 -1.699 -1.475 2.800 -5.819 -6.104 2.186 -6.618 -3.571 0.719 -6.388 -0.854 -4.862 ML 166 164 3 169 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 3 169 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 3 169 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 36 45 u a - - MP 171 170 6 175 6 2 2 19 38 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -3.672 -3.867 -3.863 0.866 -0.817 -4.715 2.020 -0.028 -3.922 0.862 -4.493 0.058 2.092 -1.977 -0.868 -1.806 ML 172 170 6 175 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 37 44 c g - - MP 177 176 6 181 4 2 2 17 35 -11.100 -11.307 -0.003 -9.721 -3.385 -2.307 -3.583 0.882 -3.575 -2.205 1.992 -1.787 -3.650 1.587 -2.497 -0.929 1.714 -0.645 0.299 -1.884 ML 178 176 6 181 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - u - - - ML 183 182 6 185 3 1 1 14 32 -12.015 -0.001 -10.669 -0.459 0.341 -1.812 0.784 D 184 182 6 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - u - - - ML 186 185 3 188 3 1 1 13 30 -12.015 -0.328 -2.298 -0.265 0.246 -1.008 0.570 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - u - - - ML 189 188 3 191 3 1 1 11 22 -1.565 -1.564 -1.627 -0.129 0.118 -0.657 0.450 D 190 188 3 191 3 0 0 6 17 -11.178 -6.691 -0.015 IL 191 191 3 191 3 1 1 11 22 -2.474 -0.294 -7.887 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - g - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -0.467 -0.548 0.562 0.158 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SECIS_1 ACC RF00031 DESC Selenocysteine insertion sequence 1 LENG 64 MAXL 123 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:11:23 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 61 EFFN 61.000000 CKSUM 4053333496 STATS LOCAL MSV -8.9042 0.74522 STATS LOCAL VITERBI -10.2759 0.74522 STATS LOCAL FORWARD -2.4006 0.74522 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38300 1.51262 1.34264 1.31794 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 0.00000 * 1 2.48630 1.46832 0.82867 1.38694 1 g - - < 1.38629 1.38629 1.38629 1.38629 0.02441 3.79292 6.44889 0.13499 2.06931 1.09861 0.40547 2 1.37424 1.91778 2.27189 0.69933 3 u - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 3 3.35875 1.16864 1.25427 0.99656 4 u - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 4 1.95682 2.68144 0.95563 0.90224 5 u - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 5 4.22115 0.69009 1.25863 1.61071 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.02111 6.44889 3.94733 1.46634 0.26236 1.09861 0.40547 6 1.09709 1.70472 1.87174 1.10721 7 a - - - 1.38629 1.38629 1.38629 1.38629 0.00323 6.43101 6.43101 1.46634 0.26236 0.15179 1.96020 7 2.46851 1.45770 1.80435 0.65790 8 U - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 8 1.94254 1.23024 1.95376 0.86110 9 u - - - 1.38629 1.38629 1.38629 1.38629 0.84845 1.84193 0.88331 0.21367 1.64825 1.09861 0.40547 9 1.26926 1.31101 2.61350 0.97781 12 u - - - 1.38629 1.38629 1.38629 1.38629 0.00539 5.91815 5.91815 1.46634 0.26236 0.00763 4.88006 10 0.14391 5.96487 2.05031 5.88948 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 11 7.12105 6.52215 7.85575 0.00267 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 12 5.98666 7.21121 0.00474 6.51419 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 13 0.00372 7.02716 6.51848 6.61041 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 14 1.62437 1.22102 1.59080 1.18983 17 u - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 15 1.45895 2.87341 0.36572 4.05616 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 16 0.95425 3.09045 0.80774 2.09110 19 g - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 17 2.16368 0.82744 1.99385 1.16552 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 18 1.55207 0.94172 1.76932 1.47935 21 c - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 19 1.30477 2.16830 1.12191 1.24224 22 g - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 20 1.58794 1.30405 1.08840 1.67415 23 g - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 21 1.40894 1.87434 1.59828 0.91655 24 u - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 22 1.60023 1.20656 1.27469 1.51682 25 c - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 23 1.95325 0.74791 2.47066 1.20297 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 24 2.07573 1.44714 1.42339 0.92031 27 u - - < 1.38629 1.38629 1.38629 1.38629 0.13089 2.45481 3.30200 0.03645 3.32998 1.09861 0.40547 25 1.78062 2.11470 1.12532 0.95127 29 u - - - 1.38629 1.38629 1.38629 1.38629 0.00329 6.41303 6.41303 1.46634 0.26236 0.08247 2.53622 26 0.11074 2.73667 5.10644 3.38194 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 27 0.00372 7.02716 6.51848 6.61041 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.01682 6.44889 4.19308 1.46634 0.26236 1.09861 0.40547 28 0.06273 3.98869 3.29704 5.24277 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.33098 3.68621 1.35980 0.12340 2.15340 2.44608 0.09062 29 1.95666 0.92625 1.78073 1.22377 34 c - - - 1.38629 1.38629 1.38629 1.38629 0.00432 6.14076 6.14076 1.46634 0.26236 0.01179 4.44613 30 2.39639 0.73967 1.23445 1.96122 35 c - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 31 2.05748 1.04333 1.68395 1.09570 36 c - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 32 1.97057 1.25398 1.44152 1.08268 37 u - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 33 1.70439 1.15011 2.64260 0.84318 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 34 1.56977 1.21555 2.08484 0.99146 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.22920 6.44889 1.59333 1.46634 0.26236 1.09861 0.40547 35 1.47590 1.30431 1.84166 1.07437 40 u - - _ 1.38629 1.38629 1.38629 1.38629 1.07964 1.08640 1.13055 0.18934 1.75739 4.87101 0.00770 36 1.70975 1.76635 0.99648 1.27671 43 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00585 5.83671 5.83671 1.46634 0.26236 0.00686 4.98480 37 1.50774 1.37141 1.07410 1.69699 44 g - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 38 1.16801 1.99301 1.22209 1.35434 45 a - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 39 2.08447 1.17651 0.75371 2.33659 46 g - - > 1.38629 1.38629 1.38629 1.38629 0.46918 1.50144 1.88601 0.16037 1.90941 1.09861 0.40547 40 1.80843 0.88594 3.12602 0.96793 49 c - - - 1.38629 1.38629 1.38629 1.38629 0.57417 0.83249 6.28626 1.01279 0.45130 0.02065 3.89039 41 1.99284 2.25564 0.50931 1.84531 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 42 1.45960 2.52618 0.61518 1.91621 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 43 1.67252 1.66360 1.02931 1.32608 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.01505 6.44889 4.31597 1.46634 0.26236 1.09861 0.40547 44 1.39382 1.42469 1.50935 1.23706 61 u - - > 1.38629 1.38629 1.38629 1.38629 0.00321 6.43705 6.43705 1.46634 0.26236 0.21268 1.65244 45 1.80129 1.22131 1.28295 1.33616 62 c - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 46 1.37552 1.28698 1.86127 1.15292 63 u - - > 1.38629 1.38629 1.38629 1.38629 0.03941 3.29514 6.44889 0.08330 2.52668 1.09861 0.40547 47 2.04501 1.96821 0.77890 1.30194 65 g - - > 1.38629 1.38629 1.38629 1.38629 0.11885 2.20299 6.44889 0.02840 3.57541 1.09861 0.40547 48 1.29013 2.08666 0.80647 1.86929 67 g - - > 1.38629 1.38629 1.38629 1.38629 0.02907 3.60935 6.44889 0.11306 2.23580 1.09861 0.40547 49 2.73271 1.01011 2.27549 0.75922 69 u - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 50 4.33910 0.45663 2.81974 1.22447 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 51 2.02806 2.05527 1.82357 0.54662 71 U - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 52 5.98666 7.21121 0.00474 6.51419 72 G - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 53 0.03893 3.43811 5.88374 5.72083 73 A - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 54 1.85982 3.15359 1.72074 0.47374 74 U - - - 1.38629 1.38629 1.38629 1.38629 0.79916 1.58651 1.06232 0.21940 1.62457 1.09861 0.40547 55 1.06924 2.57972 0.87882 1.79779 77 g - - - 1.38629 1.38629 1.38629 1.38629 0.00484 6.02719 6.02719 1.46634 0.26236 0.00911 4.70254 56 1.75832 1.15643 1.25139 1.48302 78 c - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 57 2.33843 0.95532 3.84873 0.69811 79 u - - - 1.38629 1.38629 1.38629 1.38629 0.06437 6.44889 2.80083 1.46634 0.26236 1.09861 0.40547 58 1.70435 1.08736 3.54158 0.79399 80 u - - - 1.38629 1.38629 1.38629 1.38629 0.10981 6.38789 2.27970 1.46634 0.26236 1.33393 0.30576 59 2.26414 2.19591 0.62685 1.38410 81 G - - - 1.38629 1.38629 1.38629 1.38629 0.72333 0.66742 6.29970 0.96432 0.48004 0.02232 3.81323 60 1.41581 1.56013 0.66511 3.41298 89 G - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 61 1.04560 1.08177 2.84656 1.38039 90 a - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 62 1.33328 1.53736 0.78431 2.73325 91 g - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 63 0.98049 2.27074 1.40625 1.28528 92 a - - > 1.38629 1.38629 1.38629 1.38629 0.02441 6.44889 3.79292 1.46634 0.26236 1.09861 0.40547 64 1.45443 0.98733 1.56644 1.68682 93 c - - > 1.38629 1.38629 1.38629 1.38629 0.00162 6.42610 * 1.46634 0.26236 0.00000 * //