INFERNAL1/a [1.1.5 | Sep 2023] NAME SECIS_1 ACC RF00031 DESC Selenocysteine insertion sequence 1 STATES 196 NODES 48 CLEN 64 W 93 ALPH RNA RF no CONS yes MAP yes DATE Sun Jul 7 11:15:15 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00031/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 61 EFFN 61.000000 CKSUM 4053333496 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -6.8954 0.74538 ECMLC 0.64111 -5.21929 3.18357 1600000 262301 0.004575 ECMGC 0.41948 -15.46278 -2.98400 1600000 75057 0.005329 ECMLI 0.63030 -3.01138 5.36297 1600000 235263 0.005101 ECMGI 0.43420 -11.69469 0.03460 1600000 65141 0.006141 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 93 126 -11.995 -11.934 -0.021 -6.235 -10.991 -11.386 IL 1 1 2 1 6 4 24 95 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 4 24 94 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 93 g c - - MP 3 2 3 7 6 8 28 93 126 -11.977 -11.916 -0.003 -10.693 -10.972 -11.367 -5.851 -4.811 -5.759 0.154 -6.108 -0.625 1.723 -6.165 -6.041 2.496 -6.388 1.027 1.478 -2.201 -3.505 -4.702 ML 4 2 3 7 6 3 23 93 126 -0.834 -7.765 -2.479 -2.173 -7.614 -5.144 1.414 -1.455 -1.176 -0.923 MR 5 2 3 7 6 3 22 91 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 18 88 121 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 4 24 92 125 -3.521 -3.784 -0.346 -5.439 -6.216 -5.876 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 4 23 92 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 3 92 u a - - MP 9 8 6 13 6 8 26 91 124 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -3.485 -3.693 0.754 0.920 -3.652 -4.532 0.689 -0.167 -3.745 0.025 -4.318 -1.360 2.545 -1.571 0.074 -0.198 ML 10 8 6 13 6 3 22 89 122 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 3 21 89 122 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 18 86 119 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 3 23 91 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 3 23 90 123 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 4 91 c g - - MP 15 14 6 19 6 7 24 89 122 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -1.846 -5.756 -5.967 -1.812 -5.075 -6.808 2.388 -5.680 -5.884 1.650 0.431 -3.530 2.041 -6.139 -0.753 -0.324 ML 16 14 6 19 6 3 21 87 120 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 3 20 87 120 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 17 84 117 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 3 22 89 121 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 3 22 88 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 5 90 u a - - MP 21 20 6 25 6 7 22 87 120 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -5.620 -4.601 -5.548 1.434 -6.246 -1.561 -0.763 -6.125 -5.875 2.324 -6.217 0.280 2.331 -2.120 -3.725 -0.581 ML 22 20 6 25 6 3 20 85 118 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 2 19 85 118 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 17 82 115 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 3 21 87 119 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 3 21 86 119 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 89 c g - - MP 27 26 6 31 4 5 20 85 118 -11.100 -1.373 -0.708 -9.721 -6.804 -6.556 -6.741 -2.422 -0.178 -7.478 2.873 -1.703 -6.632 1.859 -0.086 -4.176 1.306 -6.959 -3.058 -5.369 ML 28 26 6 31 4 2 19 82 115 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 18 82 115 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 17 81 113 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 3 19 84 117 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 3 19 85 118 -0.808 -1.314 -5.214 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - a - - - ML 33 32 6 35 3 3 18 74 98 -11.981 -0.001 -10.635 0.543 -0.727 -0.611 0.360 D 34 32 6 35 3 0 16 73 97 -8.385 -0.233 -2.776 IL 35 35 3 35 3 1 18 76 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 8 - u - - - ML 36 35 3 38 3 2 17 73 97 -12.015 -0.001 -10.669 -1.579 -0.047 -0.509 0.996 D 37 35 3 38 3 0 15 72 95 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 17 75 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 9 - u - - - ML 39 38 3 41 3 1 16 72 96 -2.809 -1.292 -1.155 -0.720 0.326 -0.635 0.581 D 40 38 3 41 3 0 14 71 94 -6.174 -1.687 -0.566 IL 41 41 3 41 3 2 17 73 96 -2.283 -0.345 -7.086 0.000 0.000 0.000 0.000 [ MATL 9 ] 12 - u - - - ML 42 41 3 44 3 1 15 71 95 -11.157 -0.002 -9.811 0.151 0.275 -1.453 0.394 D 43 41 3 44 3 0 14 70 94 -12.298 -0.014 -6.690 IL 44 44 3 44 3 1 15 73 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 13 - A - - - ML 45 44 3 47 3 1 14 70 94 -12.015 -0.001 -10.669 1.890 -6.807 -1.861 -6.626 D 46 44 3 47 3 0 11 69 92 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 14 72 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 14 - U - - - ML 48 47 3 50 3 1 13 69 93 -12.015 -0.001 -10.669 -8.273 -7.409 -9.333 1.996 D 49 47 3 50 3 0 10 68 91 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 13 71 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 15 - G - - - ML 51 50 3 53 3 1 12 68 92 -12.015 -0.001 -10.669 -6.637 -8.404 1.993 -7.398 D 52 50 3 53 3 0 10 67 90 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 12 70 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 16 - A - - - ML 54 53 3 56 3 1 11 67 91 -12.015 -0.001 -10.669 1.995 -8.138 -7.404 -7.537 D 55 53 3 56 3 0 9 66 89 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 12 69 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 17 - c - - - ML 57 56 3 59 3 1 10 66 90 -12.314 -0.256 -2.623 -0.257 0.306 -0.376 0.210 D 58 56 3 59 3 0 9 65 89 -5.620 -0.734 -1.403 IL 59 59 3 59 3 1 11 67 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 81 - g - - MR 60 59 3 62 3 1 10 66 89 -12.060 -0.036 -5.346 -1.040 -0.976 0.956 0.092 D 61 59 3 62 3 0 8 64 88 -10.847 -0.583 -1.590 IR 62 62 3 62 3 1 10 66 90 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 80 - u - - MR 63 62 3 65 3 1 9 65 88 -12.208 -0.001 -10.525 -0.425 0.587 -2.823 0.689 D 64 62 3 65 3 0 7 63 87 -9.745 -0.097 -3.975 IR 65 65 3 65 3 1 9 65 89 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 79 - u - - MR 66 65 3 68 3 1 8 64 87 -12.314 -0.001 -10.632 -1.334 0.771 -3.245 0.841 D 67 65 3 68 3 0 5 62 85 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 8 64 88 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 78 - c - - MR 69 68 3 71 3 1 7 63 86 -12.314 -0.537 -1.686 -0.814 0.509 0.057 -0.048 D 70 68 3 71 3 0 5 61 85 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 9 63 87 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 77 - g - - MR 72 71 3 74 3 1 8 62 85 -1.641 -0.560 -10.096 0.442 -1.594 0.687 -0.514 D 73 71 3 74 3 0 4 60 84 -11.755 -0.023 -5.985 IR 74 74 3 74 3 1 7 62 85 -2.630 -0.261 -7.999 0.000 0.000 0.000 0.000 [ MATR 20 ] - 74 - U - - MR 75 74 3 77 3 1 8 60 84 -12.314 -0.001 -10.632 -0.466 -2.653 -0.356 1.224 D 76 74 3 77 3 0 0 58 82 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 3 61 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 73 - A - - MR 78 77 3 80 3 1 7 59 83 -12.314 -0.001 -10.632 1.965 -3.708 -6.732 -6.591 D 79 77 3 80 3 0 0 58 81 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 60 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 72 - G - - MR 81 80 3 83 3 1 6 58 82 -12.314 -0.001 -10.632 -6.637 -8.404 1.993 -7.398 D 82 80 3 83 3 0 0 57 80 -6.390 -1.568 -0.620 IR 83 83 3 83 3 1 1 59 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 71 - U - - MR 84 83 3 86 5 1 6 57 81 -10.961 -0.003 -10.776 -10.988 -11.880 -0.733 -0.815 -0.511 1.090 D 85 83 3 86 5 0 0 56 79 -5.352 -0.707 -2.978 -4.409 -2.404 IR 86 86 3 86 5 1 1 58 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 18 70 G C - - MP 87 86 3 91 6 2 6 56 80 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -6.186 -0.340 -6.016 1.677 -7.162 -6.625 0.135 -6.687 -6.417 3.146 -6.677 0.771 -2.493 -5.885 -4.238 -4.972 ML 88 86 3 91 6 1 1 55 78 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 54 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 52 75 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 56 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 56 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 19 69 g c - - MP 93 92 6 97 6 2 6 54 78 -11.995 -5.802 -0.029 -10.711 -10.991 -11.386 -6.056 -4.703 -5.877 2.443 -6.964 -6.475 -0.402 -6.552 -6.308 2.633 -6.558 0.617 -0.003 -5.735 -0.163 -4.839 ML 94 92 6 97 6 1 1 53 76 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 52 76 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 50 73 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 54 77 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 53 77 -3.239 -0.258 -6.751 -4.918 -6.024 0.000 0.000 0.000 0.000 [ MATP 26 ] 20 67 c g - - MP 99 98 6 103 6 2 5 52 76 -11.995 -4.369 -0.074 -10.711 -10.991 -11.386 -4.513 -0.842 -4.675 0.300 -0.636 -5.525 2.575 -4.821 -4.699 0.364 -5.259 0.206 1.800 -4.824 -0.237 -0.741 ML 100 98 6 103 6 1 1 51 74 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 50 74 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 48 71 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 52 75 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 51 75 -4.051 -0.141 -7.562 -5.730 -6.836 0.000 0.000 0.000 0.000 [ MATP 27 ] 21 65 c g - - MP 105 104 6 109 6 2 5 50 74 -11.995 -5.659 -0.031 -10.711 -10.991 -11.386 -5.873 -5.713 -5.933 1.890 -5.052 -6.778 2.465 -0.666 -5.851 0.943 -6.379 -0.940 1.043 -6.102 0.550 -4.681 ML 106 104 6 109 6 1 1 49 72 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 48 72 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 46 69 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 50 73 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 49 73 -3.305 -0.245 -6.816 -4.984 -6.090 0.000 0.000 0.000 0.000 [ MATP 28 ] 22 63 u a - - MP 111 110 6 115 6 2 5 48 72 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -4.517 -4.491 -1.017 2.000 -4.492 -5.490 0.962 -4.888 -4.725 1.695 -5.266 -0.591 2.209 -4.783 -1.147 -1.765 ML 112 110 6 115 6 1 1 47 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 46 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 44 67 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 48 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 47 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 23 62 g c - - MP 117 116 6 121 6 2 4 46 70 -11.995 -11.934 -0.020 -6.360 -10.991 -11.386 -6.025 -5.123 -5.951 1.430 -5.788 -6.654 2.162 -6.090 -6.122 2.236 -6.513 -0.123 1.424 -2.026 -3.206 -4.794 ML 118 116 6 121 6 1 1 45 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 44 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 42 65 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 46 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 45 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 24 61 a u - - MP 123 122 6 127 6 2 5 44 68 -11.978 -11.918 -0.003 -10.694 -10.974 -11.369 -4.524 -4.589 -4.679 1.940 -4.404 -5.522 1.330 -4.844 -4.714 1.705 -5.268 -2.896 1.697 -0.371 0.226 -0.361 ML 124 122 6 127 6 1 1 43 66 -7.347 -7.693 -0.472 -2.102 -7.543 -5.072 -0.609 -0.782 -1.276 1.233 MR 125 122 6 127 6 1 1 42 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 40 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 44 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 43 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 25 60 c g - - MP 129 128 6 133 6 2 4 42 66 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -4.670 -4.713 -4.818 1.640 -1.509 -5.661 2.085 -4.952 -4.846 1.859 -0.869 0.049 0.673 -4.959 0.246 -3.901 ML 130 128 6 133 6 1 1 40 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 40 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 38 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 42 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 41 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 26 59 c g - - MP 135 134 6 139 6 2 4 40 64 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -6.337 -6.060 -6.339 1.112 0.026 -7.174 2.800 -5.879 -6.207 0.528 -6.719 -3.653 1.024 -6.523 1.119 -4.940 ML 136 134 6 139 6 1 1 38 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 6 1 1 38 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 138 134 6 139 6 0 0 36 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 139 139 5 139 6 1 1 40 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 39 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 27 58 c g - - MP 141 140 6 145 4 2 2 38 62 -3.514 -1.548 -0.871 -5.393 -3.387 -2.013 0.182 -0.397 -3.577 -4.437 1.832 -3.936 -1.032 0.273 0.644 -0.291 0.472 -1.006 1.766 -0.632 ML 142 140 6 145 4 1 1 35 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 143 140 6 145 4 1 1 35 59 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 144 140 6 145 4 0 0 34 57 -4.568 -4.250 -2.265 -0.520 IL 145 145 5 145 4 1 1 34 57 -4.644 -5.328 -0.104 -7.813 0.000 0.000 0.000 0.000 IR 146 146 6 146 3 1 1 37 61 -1.132 -0.885 -8.799 0.000 0.000 0.000 0.000 [ MATL 34 ] 29 - u - - - ML 147 146 6 149 3 1 1 28 46 -11.982 -0.001 -10.637 -0.551 -0.893 0.205 0.702 D 148 146 6 149 3 0 0 27 46 -8.328 -0.243 -2.720 IL 149 149 3 149 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 30 - A - - - ML 150 149 3 152 3 1 1 27 45 -12.015 -0.001 -10.669 1.856 -2.070 -5.403 -3.068 D 151 149 3 152 3 0 0 27 46 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 31 - A - - - ML 153 152 3 155 3 1 1 25 44 -12.015 -0.028 -5.702 1.995 -8.138 -7.404 -7.537 D 154 152 3 155 3 0 0 26 45 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 32 - A - - - ML 156 155 3 158 3 1 1 24 43 -6.030 -0.513 -1.816 1.901 -3.417 -2.761 -5.444 D 157 155 3 158 3 0 0 22 41 -8.119 -3.632 -0.127 IL 158 158 3 158 3 1 1 26 44 -2.091 -0.456 -4.791 0.000 0.000 0.000 0.000 [ MATL 38 ] 34 - c - - - ML 159 158 3 161 3 1 1 23 42 -11.809 -0.002 -10.127 -1.034 0.771 -0.431 0.088 D 160 158 3 161 3 0 0 22 40 -10.463 -3.003 -0.193 IL 161 161 3 161 3 1 1 25 43 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 39 ] - 49 - c - - MR 162 161 3 164 5 1 1 22 41 -1.716 -0.527 -10.337 -10.549 -11.440 -0.558 0.822 -2.153 0.409 D 163 161 3 164 5 0 0 21 40 -1.721 -0.559 -7.312 -8.743 -6.738 IR 164 164 3 164 5 1 1 22 41 -3.783 -0.120 -9.772 -7.940 -9.046 0.000 0.000 0.000 0.000 [ MATP 40 ] 35 46 c g - - MP 165 164 3 169 6 2 2 21 39 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -6.211 -5.950 -6.228 0.565 -1.886 -1.044 2.903 -5.822 -6.113 1.985 -6.628 -3.588 0.623 -6.404 -0.810 -4.869 ML 166 164 3 169 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 167 164 3 169 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 168 164 3 169 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 169 169 5 169 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 170 170 6 170 5 1 1 21 39 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 36 45 c g - - MP 171 170 6 175 6 2 2 19 37 -11.995 -11.934 -0.003 -10.711 -10.991 -11.386 -3.775 -3.962 -3.963 0.948 -0.419 -4.815 2.104 0.217 -4.019 0.915 -4.589 -1.380 2.022 -1.953 -0.638 -1.791 ML 172 170 6 175 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 173 170 6 175 6 1 1 21 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 174 170 6 175 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 175 175 5 175 6 1 1 20 39 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 176 176 6 176 5 1 1 20 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 37 44 c g - - MP 177 176 6 181 4 2 2 17 35 -11.100 -11.307 -0.003 -9.721 -3.383 -2.022 -3.581 1.031 -3.573 -1.837 1.979 -1.881 -3.648 1.237 -2.188 -1.169 1.839 -0.567 0.359 -1.661 ML 178 176 6 181 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 179 176 6 181 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 180 176 6 181 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 181 181 5 181 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 182 182 6 182 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 38 - u - - - ML 183 182 6 185 3 1 1 14 32 -12.015 -0.001 -10.669 -0.436 0.540 -1.679 0.579 D 184 182 6 185 3 0 0 16 34 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 39 - c - - - ML 186 185 3 188 3 1 1 12 30 -12.015 -0.381 -2.107 -0.169 0.432 -1.019 0.342 D 187 185 3 188 3 0 0 15 33 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 40 - u - - - ML 189 188 3 191 3 1 1 10 20 -1.408 -1.525 -1.859 -0.108 0.258 -0.687 0.328 D 190 188 3 191 3 0 0 6 16 -11.363 -6.876 -0.013 IL 191 191 3 191 3 1 1 10 20 -2.741 -0.241 -7.933 0.000 0.000 0.000 0.000 [ MATL 46 ] 43 - g - - - ML 192 191 3 194 2 1 1 1 1 * 0.000 -0.547 -0.453 0.711 -0.077 D 193 191 3 194 2 0 0 0 0 * 0.000 IL 194 194 3 194 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 195 194 3 -1 0 0 0 0 0 // HMMER3/f [3.4 | Aug 2023] NAME SECIS_1 ACC RF00031 DESC Selenocysteine insertion sequence 1 LENG 64 MAXL 121 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Sun Jul 7 11:15:15 2024 COM [1] /hps/software/users/agb/rfam/bin/cmbuild -F CM SEED COM [2] /hps/software/users/agb/rfam/bin/cmcalibrate --cpu 8 /nfs/production/agb/rfam/15/rescan/families/RF00031/CM NSEQ 61 EFFN 61.000000 CKSUM 4053333496 STATS LOCAL MSV -8.8262 0.74538 STATS LOCAL VITERBI -10.2532 0.74538 STATS LOCAL FORWARD -2.4618 0.74538 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.38189 1.47852 1.33588 1.35482 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 0.00000 * 1 2.50265 1.39997 0.74075 1.63593 1 g - - < 1.38629 1.38629 1.38629 1.38629 0.01701 4.18086 6.44889 0.19555 1.72814 1.09861 0.40547 2 1.45063 1.80642 2.34141 0.68291 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 3 3.26789 1.10754 1.24933 1.06466 4 u - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 4 1.74654 2.81329 0.94034 0.98051 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 5 4.26752 0.63085 1.23940 1.80615 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.02707 6.44889 3.68375 1.46634 0.26236 1.09861 0.40547 6 1.01000 1.88987 1.80957 1.13642 7 a - - - 1.38629 1.38629 1.38629 1.38629 0.00325 6.42506 6.42506 1.46634 0.26236 0.11861 2.19061 7 2.48050 1.41864 1.73884 0.69609 8 u - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 8 1.88502 1.16042 1.82673 0.98382 9 u - - - 1.38629 1.38629 1.38629 1.38629 0.89382 1.94316 0.80372 0.21672 1.63557 1.09861 0.40547 9 1.28171 1.19546 2.39320 1.11311 12 u - - - 1.38629 1.38629 1.38629 1.38629 0.00573 5.85816 5.85816 1.46634 0.26236 0.00704 4.95906 10 0.07645 6.10454 2.67601 5.97938 13 A - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 11 7.12105 6.52215 7.85575 0.00267 14 U - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 12 5.98666 7.21121 0.00474 6.51419 15 G - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 13 0.00372 7.02716 6.51848 6.61041 16 A - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 14 1.56456 1.17416 1.64691 1.24099 17 c - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 15 1.38177 2.65344 0.41438 4.03381 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 16 1.06652 3.00928 0.72416 2.10587 19 g - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 17 2.14307 0.87738 1.85378 1.17057 20 c - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 18 1.44809 0.95041 1.86641 1.49735 21 c - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 19 1.25032 2.05466 1.39526 1.08565 22 u - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 20 1.75757 1.26529 1.04087 1.64905 23 g - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 21 1.40075 1.81148 1.53895 0.97931 24 u - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 22 1.59779 1.23802 1.11667 1.71296 25 g - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 23 1.98007 0.69424 2.33410 1.32580 26 c - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 24 1.96446 1.44979 1.36750 0.99316 27 u - - < 1.38629 1.38629 1.38629 1.38629 0.11855 2.43244 3.73095 0.03565 3.35172 1.09861 0.40547 25 1.76821 2.00535 1.24435 0.89988 29 u - - - 1.38629 1.38629 1.38629 1.38629 0.00324 6.42625 6.42625 1.46634 0.26236 0.12400 2.14880 26 0.10009 2.82142 5.13132 3.51262 30 A - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 27 0.00372 7.02716 6.51848 6.61041 31 A - - - 1.38629 1.38629 1.38629 1.38629 0.02191 6.44889 3.90778 1.46634 0.26236 1.09861 0.40547 28 0.06830 3.75477 3.30027 5.16009 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.35686 4.09927 1.26039 0.18421 1.78235 2.68742 0.07048 29 2.10278 0.85186 1.68478 1.32510 34 c - - - 1.38629 1.38629 1.38629 1.38629 0.00450 6.09902 6.09902 1.46634 0.26236 0.01061 4.55165 30 2.34584 0.66369 1.36987 2.00139 35 C - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 31 2.01346 0.94180 1.90756 1.11442 36 c - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 32 1.86662 1.25199 1.64061 1.00633 37 u - - < 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 33 1.68826 1.01182 2.55029 0.98472 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 34 1.50312 1.08699 2.09235 1.14905 39 c - - _ 1.38629 1.38629 1.38629 1.38629 0.26578 6.44889 1.46185 1.46634 0.26236 1.09861 0.40547 35 1.46144 1.20717 1.86243 1.15913 40 u - - _ 1.38629 1.38629 1.38629 1.38629 1.05280 0.97824 1.29074 0.15120 1.96377 5.00060 0.00676 36 1.76549 1.70018 0.89346 1.43966 43 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00567 5.86839 5.86839 1.46634 0.26236 0.00713 4.94635 37 1.42703 1.50368 1.06341 1.64822 44 g - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 38 1.17415 1.96400 1.15422 1.44681 45 g - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 39 2.15891 1.27533 0.68542 2.28934 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.52359 1.48576 1.70771 0.10218 2.33169 1.09861 0.40547 40 1.77294 0.81653 2.87868 1.10263 49 c - - - 1.38629 1.38629 1.38629 1.38629 0.53819 0.88125 6.25081 0.61978 0.77232 0.01731 4.06534 41 2.04957 2.07850 0.50597 1.94373 58 G - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 42 1.64722 2.38186 0.55917 1.94246 59 G - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 43 2.06661 1.45973 0.97974 1.32547 60 g - - > 1.38629 1.38629 1.38629 1.38629 0.01580 6.44889 4.26215 1.46634 0.26236 1.09861 0.40547 44 1.55651 1.36308 1.45112 1.20747 61 u - - > 1.38629 1.38629 1.38629 1.38629 0.00321 6.43630 6.43630 1.46634 0.26236 0.20258 1.69618 45 1.76573 1.16511 1.24495 1.47362 62 c - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 46 1.21445 1.56674 1.70060 1.16531 63 u - - > 1.38629 1.38629 1.38629 1.38629 0.02458 3.78546 6.44889 0.13402 2.07602 1.09861 0.40547 47 2.01518 2.09563 0.82598 1.18448 65 g - - > 1.38629 1.38629 1.38629 1.38629 0.05678 2.92599 6.44889 0.05802 2.87590 1.09861 0.40547 48 1.33533 2.12884 0.84593 1.66708 67 g - - > 1.38629 1.38629 1.38629 1.38629 0.02251 3.87889 6.44889 0.14661 1.99237 1.09861 0.40547 49 2.73557 0.93702 2.25415 0.82466 69 u - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 50 4.31716 0.50423 2.60908 1.17412 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 51 1.89424 1.95101 1.74067 0.63105 71 U - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 52 5.98666 7.21121 0.00474 6.51419 72 G - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 53 0.02437 3.95632 6.05284 5.95475 73 A - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 54 1.70933 3.22492 1.63302 0.53800 74 U - - - 1.38629 1.38629 1.38629 1.38629 0.76304 1.50322 1.16687 0.17843 1.81146 1.09861 0.40547 55 1.07991 2.49127 0.90994 1.74284 77 g - - - 1.38629 1.38629 1.38629 1.38629 0.00460 6.07818 6.07818 1.46634 0.26236 0.01011 4.59898 56 1.95072 1.03320 1.34677 1.41931 78 c - - - 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 57 2.31069 0.85177 3.63555 0.80346 79 u - - - 1.38629 1.38629 1.38629 1.38629 0.07721 6.44889 2.62109 1.46634 0.26236 1.09861 0.40547 58 1.68123 0.97958 3.34275 0.90871 80 u - - - 1.38629 1.38629 1.38629 1.38629 0.13032 6.37509 2.11622 1.46634 0.26236 1.25933 0.33386 59 2.10722 2.06299 0.72371 1.32275 81 g - - - 1.38629 1.38629 1.38629 1.38629 0.61512 0.78190 6.27273 0.86197 0.54875 0.01922 3.96155 60 1.55502 1.47772 0.64530 3.32002 89 G - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 61 1.14692 1.04708 3.12409 1.24672 90 c - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 62 1.28196 1.61565 0.80043 2.59545 91 g - - > 1.38629 1.38629 1.38629 1.38629 0.00317 6.44889 6.44889 1.46634 0.26236 1.09861 0.40547 63 0.96790 2.38309 1.29065 1.37530 92 a - - > 1.38629 1.38629 1.38629 1.38629 0.01701 6.44889 4.18086 1.46634 0.26236 1.09861 0.40547 64 1.73083 0.89427 1.54269 1.60869 93 c - - > 1.38629 1.38629 1.38629 1.38629 0.00161 6.43349 * 1.46634 0.26236 0.00000 * //