# STOCKHOLM 1.0
#=GF ID U1
#=GF AC RF00003
#=GF DE U1 spliceosomal RNA
#=GF AU Ontiveros-Palacios N; 0000-0001-8457-4455
#=GF GA 69.5
#=GF NC 69.4
#=GF TC 69.5
#=GF SE Zwieb C, The uRNA database, PMID:9016512
#=GF SS Published; PMID:2405391
#=GF TP Gene; snRNA; splicing;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB
#=GF CL CL00005
#=GF DR SO; 0000391; U1_snRNA;
#=GF DR GO; 0000395; mRNA 5'-splice site recognition;
#=GF DR GO; 0030627; pre-mRNA 5'-splice site binding;
#=GF DR GO; 0005685; U1 snRNP;
#=GF RN [1]
#=GF RM 9016512
#=GF RT The uRNA database.
#=GF RA Zwieb C
#=GF RL Nucleic Acids Res 1997;25:102-103.
#=GF RN [2]
#=GF RM 2405391
#=GF RT Saccharomyces cerevisiae U1 small nuclear RNA secondary structure contains
#=GF RT both universal and yeast-specific domains.
#=GF RA Kretzner L, Krol A, Rosbash M
#=GF RL Proc Natl Acad Sci U S A 1990;87:851-855.
#=GF RN [3]
#=GF RM 7984237
#=GF RT Crystal structure at 1.92 A resolution of the RNA-binding domain of the
#=GF RT U1A spliceosomal protein complexed with an RNA hairpin.
#=GF RA Oubridge C, Ito N, Evans PR, Teo CH, Nagai K
#=GF RL Nature 1994;372:432-438.
#=GF RN [4]
#=GF RM 11297556
#=GF RT Two functionally distinct steps mediate high affinity binding of U1A
#=GF RT protein to U1 hairpin II RNA.
#=GF RA Katsamba PS, Myszka DG, Laird-Offringa IA
#=GF RL J Biol Chem 2001;276:21476-21481.
#=GF RN [5]
#=GF RM 19325628
#=GF RT Crystal structure of human spliceosomal U1 snRNP at 5.5 A resolution.
#=GF RA Pomeranz Krummel DA, Oubridge C, Leung AK, Li J, Nagai K
#=GF RL Nature. 2009;458:475-480.
#=GF RN [6]
#=GF RM 30975767
#=GF RT Mechanism of 5' splice site transfer for human spliceosome activation.
#=GF RA Charenton C, Wilkinson ME, Nagai K
#=GF RL Science. 2019;364:362-367.
#=GF CC U1 is a small nuclear RNA (snRNA) component of the spliceosome (involved
#=GF CC in pre-mRNA splicing). Its 5' end forms complementary base pairs with the
#=GF CC 5' splice junction, thus defining the 5' donor site of an intron. There
#=GF CC are significant differences in sequence and secondary structure between
#=GF CC metazoan and yeast U1 snRNAs, the latter being much longer (568
#=GF CC nucleotides as compared to 164 nucleotides in human). Nevertheless,
#=GF CC secondary structure predictions suggest that all U1 snRNAs share a 'common
#=GF CC core' consisting of helices I, II, the proximal region of III, and IV [1].
#=GF CC This family does not contain the larger yeast sequences. The structure of
#=GF CC U1 spliceosomal RNA has been reported in [5,6]. It present 4 Stem loops
#=GF CC (SL1, SL2, SL3, and SL4) and a region call Helix H. SL1, SL2, and SL3 are
#=GF CC join for the Helix H, forming a four-helix junction that are separated of
#=GF CC SL4. U1 snRNA is important in the precatalytic spliceosome, where the 5'
#=GF CC splice site (5'SS) of the pre-mRNA is recognized by pairing with 5'-U1
#=GF CC snRNA. Where spliceosome activation is initiated by a disruption of the
#=GF CC 5′SS–U1 snRNP interaction by the DEAD-box helicase Prp28 [6]. The
#=GF CC structure of U1 small nucleolar RNA was reported in PDB:6QX9
#=GF WK U1_spliceosomal_RNA
#=GF SQ 100

X06810.1/261-421                        AUACUUACCUGGACGG-GGUCA-AUGG---AUGAUCAA-UAAG-GUCCA-UGGCCU---AGG-GAAGUAACCUCCAUU-----GCACUU-AGGAGG-GGUGCUUU---------CCUA-AGGUCUGCCCAA---GUGG--CAG-AGCCU-ACGUCAUAAUUUGUGGUAG--UGGGGG--CUUGCGUU--CGCGCAGCCCC
X14417.1/177-340                        AUACUUACCUGGACGG-GGUCA-AUGG---GUAAUCAA-GAAG-UUCCA-UGGCCU---AGG-UUGGUGACCUCCAUU-----GCACUA-AGGAGG-GGUGCUUG---------CCUA-AGGUCGACCCAA---GUGG--UUG-AGCCU-ACGUCAUAAUUUGUUGUUGCAGAGGGG-GCCUGUGUU--CGCGCAGCCCC
Z11883.1/3441-3603                      UUACUG--GUGGGUGGCGGAGA-AGAGAUCGUGACAUC-GUAG-ACCUA-UGGCUU---AGA-UUGAUGACCUCCAUU-----GCACUU-UGGAGG-GGUGCCUG---------CCUAAAGUCUG-CCCAA---GUGG--UCG-AGCCU-ACACUAUAAUUUGUGAUAG---UGGGG-GCUUGCGUU--CGCGCAGCCCC
X14419.1/178-338                        AUACUUACCUGGACGG-GGUCA-AUGG---GCGAUCAU-GAAC-ACCCA-UGGCCU---AGG-UUGGUGACCAUCAUU-----GCACUU-UGAAGG-GGUGCCCG---------CCUA-AGGUCGGCCCAA---GUGG--UCG-AGCCU-ACGUCAUAAUUUGUUGCUG---AGGGG-GCCUGCGUU--CGCGCGGCCCC
X14416.1/171-331                        AUACUUACCUGGACGG-GGUCU-AUGG---GCGAUCAU-GUAG-GUCCA-UGGCCU---AGG-UUGGUGACUUUCAUU-----GCACUU-UGGAGG-GGUGCCCG---------CCUA-AGAUCAGCCCAA---GAGG--UUG-AGUCU-ACAUCAUAAUUUGUUGCUG---AGGGG-GCAUGCGUU--CGCGCAGCCCC
X14415.1/175-335                        UUACUUACCUGGACGG-GGUCA-AUUG---GCGAUCAU-GAAG-GUCCA-UGGCCU---AGG-UUGGUAACCUCCAUU-----GCACUU-AGGAGA-GGUGCCUA---------CCUA-AGAUCGGCCCAA---GUGG--CCG-AAUCU-ACGUCAUAAUUUGUUGCUG---AGGGG-GCCUGCGUU--CGCGCGGCCCC
X14414.1/152-312                        AUACUUACCUGGACGG-GGUCA-AUAG---GCGAUCAA-UAAG-ACCCA-UGGCCU---AGG-UUGGUGACCUCCAUU-----GCACUU-UGGAGG-GGUGCCAA---------UCUA-AGGUCGGCCCAA---GUGG--UCG-AGCCU-ACGUCAUAAUUUGUUGCUG--UGAGGG--CCUGUGUU--CGCGCGGCCCC
Z11883.1/2839-2998                      AUACUUACCUGGACGG-GGUUA-AUGG---GCGAUCAA-UAAG-ACCCA-UGGGCCU--AGG-UUGGUGACCUCCAUU-----GCACUU-UGGAGG-GGUGCCUA---------CCUA-AGGUCGGCUCAA---GUAG--UCG-AGCCU-ACGUCAUAAUUUGUUGCAG----UGGG--CCUGCGUU--CGCGCGGCCCC
Z11883.1/1496-1656                      UUACUUACCUGGACGG-GGUCA-AUGG---GCAAUCAA-UAAG-ACCCA-UGGCCU---AGG-UUGGUGACCUCCAUU-----GCACUU-UGGAGG-GGUGCCUU---------CCUA-AGGUCGACCCAA---GUGG--UCG-AGCCU-AUGUCAUAAUUUGUUGCAG---UGGGG-GCCAGCGUU--CGCGCGGCCCC
Z11883.1/361-521                        AUACUUACCUGGACGG-GGUCA-AUGG---ACGAUCAA-UAAG-ACCCA-UGGCCU---AGG-UUGGUGACCUCCAUU-----GCACUU-UGGAGG-GGUGCCUG---------CCUA-AGGUCGGCCCAA---GUGG--UCG-AGCCU-ACGUCAUAAUUUGUUGCAG---UGGGG-GCCUGCGUU--CGCGCGGCCCC
Z11882.1/353-512                        AUACUUACCUGGACGG-GGUCA-AUGG---GCGAUCAA-UAAG-ACCCA-UGGCCU---AGG-CUUGUGACCUCCAUU-----GCACUU-UGGAGG-GGUGCCUG---------CCUA-AGGUCGACCUAA---GUGG--UCG-GGCCU-AUGUCAUAAUUUGUUGCUG--UGGGGG--CCUGCGUU--C-UGCGCGCCC
Z11881.1/1515-1675                      AUACUUACCUGGACGG-GGUCA-AUGG---GCGAUCAA-UAAG-ACCUA-UGGCCU---AGG-CUUGUGACCUCCAUU-----GCACUU-UGGAGG-GGUGCCUG---------CCUA-AGGUCGGCCCAA---GUGG--UCG-AGCCU-ACGUCAUAAUUUGUUACAG--CGGGGG--CCUGCGUU--CGCGCGGCCCU
Z11881.1/315-475                        AUACUUACCUGGACGG-GGUCA-AUGG---GCGAUCAA-UAAG-ACCUA-UGGCCU---AGG-CUUGUGACCUCCAUU-----GCACUU-UGGAGG-GGUGCCUG---------CCUA-AGGUCGACCCAA---GUGG--UCG-AGCCU-ACGUCAUAAUUUGUUGCUG--UGGGGG--CCUGCGUU--CGCGCGGCCCU
Z11881.1/2581-2742                      AUACUUACCUGGACGG-GGUCA-AUGG---GUGAUCAA-UAAG-ACCCAAUGACCC---AGG-CUUGUGACCUACAUU-----GCACUU-UGGAGG-GGUGCCUG---------CCUA-AGGUCAGCCCAA---GUGG--UUG-AGCCU-AUGUCAUAAUUUGUUGCAG---UGGGU-GCCUGUGUU--UGCGCACGCCC
K02430.1/690-853                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUCUCCC
X12936.1/575-738                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUCUCCC
V00590.1/1-162                          --ACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
M28012.1/108-271                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
M28013.1/108-271                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
V00591.1/394-557                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
M38483.1/1-164                          AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
M14387.1/399-562                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
K00788.1/2-165                          AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
J00318.1/433-596                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
K00529.1/225-388                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUC--CGCGCUUUCCC
J00645.1/51-213                         AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGUGUAUCCAUU-----GCA-UC-CGG-AU-GUGCUGAC---------CACUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--UGUGCUCUCCC
M14585.1/106-268                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGCC---------CCUG-CGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
M14586.1/106-268                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGCC---------CCUG-CGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
M14587.1/106-268                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGCC---------CCUG-CGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
M14385.1/106-268                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGCC---------CCUG-CGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
M14386.1/106-268                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGCC---------CCUG-CGAUUUCCCCAAA-UGUGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
M32270.1/371-535                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAU-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUCACCCAUU-----GCACUU-UGGGGU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUCUCCC
K03128.1/241-77                         AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAU-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUCACCCAUU-----GCACUU-UGGGGU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUCUCCC
Y00131.1/944-1108                       AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAU-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUCACCCAUU----UGCACUGUUGGGGU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-A-UGCA-AAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUCUCCC
V00444.1/1-162                          --ACUUACCUGGCAGG-GGAGA-CACC---AUGAUCAG-GCAG-GUGGU-UUUCCCA--GGG-CGAGGCUCAUCCCCU-----GCACUC-CGG-GU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUCUCCC
X01093.1/329-492                        AUACUUACCUGGCAGG-GGAGA-CACC---AUGAUCAG-GCAG-GUGGU-UUUCCCA--GGG-CGAGGCUCAUCCCCU-----GCACUC-CGG-GU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUCUCCC
J00914.1/146-309                        AUACUUACCUGGCAGG-GGAGA-CACC---AUGAUCAG-GCAG-GUGGU-UUUCCCA--GGG-CGAGGCUCAUCCCCU-----GCACUC-CGG-GU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUCUCCC
X01091.1/442-605                        AUACUUACCUGGCAGG-GGAGA-CACC---AUGAUCAG-GCAG-GUGGU-UUUCCCA--GGG-CGAGGCUCAUCCCCU-----GCACUC-CGG-GU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUCUCCC
X01092.1/374-537                        AUACUUACCUGGCAGG-GGAGA-CACC---AUGAUCAG-GCAG-GUGGU-UUUCCCA--GGG-CGAGGCUCAUCCCCU-----GCACUC-CGG-GU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUCUCCC
X00549.1/150-313                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAU-GAAG-GUGGU-UCUCCCA--GGG-CGAGGCUCAGCCAUU-----GCACUC-CGG-UU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUCUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
X02585.1/923-1086                       AUACUUACCUGGCAGG-CGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UCUCCCA--GGG-CGAGGCUCAGCCAUU-----GCACUC-CGG-CU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAACUCG-ACUGCAUAAUUUCUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
X02585.1/1513-1676                      AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UCUCCCA--GGG-CGAGGCUCAGCCAUU-----GCACUC-CGG-CC-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGCGG---GAAAGUCG-ACUGCAUAAUUUCUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
M32271.1/288-452                        AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUCACCCAUU-----GCACUU-UGGGGU-GUGCUGAC---------CCCUGCGAUUUCCCAAAU--GCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG-AGCUGCGUU--CGCGCGCCCCC
M59827.1/771-934                        AUACUUACCUGGCAGG-GGAGC-AUCU---GUGAUCAG-CAAG-GCAGA-GCUCCCA--GGG-UGAGGCUCAUCCAUU-----GCACAU-CGGAUU--UGCUGAC---------CCCUGCGAUGUCCCCAAA-UGCGG---GAUUCUCG-ACUGUAUUAUUUCUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
V01266.1/1-168                          --ACUUACCUGGCAGG-GAGAU--ACC---AUGAUCAC-GAAG-GUGUU-UUCUCUCCAGGG-CGUGGUCUAUCCAUUGAGGCGCACUC-CGU-GG-AUGCUGAC---------CCCUGCGAUUUCCUCCAAAUGCGG---GAAACUCG-ACUGCAUAAUUUGUGGUAG--UGCGGG-G-GACUGUU--CGCGCUC-CUC
DQ058357.1/1-164                        AUACUUAACUGGCAAG-GGAAA-UAAC---AUGAUCAUUAAAG-GUGGA-UUUUUCA--GGG-UGAGGUUUGUCUCUU-----GCAUUG-UGG-AU-GUGCUGAC---------CCCUGUGGUUUUCUACAAAUGUGG---GAAACUUA-AUUGCAUAAUUUGUGGUAG--UGGGGA-CU---AUGU--UGGUUCUCUCC
M27880.1/1-161                          AUACUUACCUGGCGCA-GGGGU-CGCA---UUGAUCAA-GAAG-GAUGC-ACCCCC---AGG-GCGAGGCUUGCCAUU-----GCACUC-CGG-CU--UGCUGAA---------CCUUGCGAUUCCCCCAAA-CGUGG---GGAACUCG-GGCGUAUUAUUUAUGGUAG--CGGAGA-U-CUGCGUU--CGCGCUA-UCU
X04994.1/620-781                        AUACUUACCUGGCGCA-GGGGU-CGCA---UUGAUCAA-GAAG-GAUGC-ACCCCC---AGG-GCGAGGCUUGCCAUU-----GCACUC-CGG-CU--UGCUGAA---------CCUUGCGAUUCCCCCAAA-CGUGG---GGAACUCG-GGCGUACAAUUUAUGAUAG---CGGAG-AUCUGCGUU--CGCGCUAUCUC
X01749.1/448-609                        AUACUUACCUGGCGCA-GGGGU-CGCA---UUGAUCAA-GAAG-GAUGC-ACCCCC---AGG-GCGAGGCUUGCCAUU-----GCACUC-CGG-CU--UGCUGAA---------CCUUGCGAUUCCCCCAAA-CGUGG---GGAACUCG-GGCGUACAAUUUAUGGUAG---CGGAG-AUCUGCGUU--CGCGCUAUCUC
X04993.1/647-808                        AUACUUACCUGGCGCA-GGGGU-CGCA---UUGAUCAA-GAAG-GAUGC-ACCCCC---AGG-GCGAGGCUUGCCAUU-----GCACUC-CGG-CU--UGCUGAA---------CCUUGCGAUUCCCCCAAA-CGUGG---GGAACUCG-GGCGUACAAUUUAUGGUAG---CGGAG-AUCUGCGUU--CGCGCUAUCUC
X56629.1/421-582                        AUACUUACCUGGCGCA-GGGGU-CGCA---UUGAUCAA-GAAG-GAUGC-ACCCCC---AGG-GCGAGGCUUGCCAUU-----GCACUC-CGG-CU--UGCUGAA---------CCUUGCGAUUCCCCCAAA-CGUGG---GGAACUCG-GGCGUAUUAUUUAUGGUAG---CGGAG-AUCUGCGUU--CGCGCUAUCUC
X75936.1/1034-1195                      AUACUUACCUGGCGCA-GGGGU-AGCA---UUGAUCAA-GAAG-GAUGC-ACCCCC---AGG-ACGAGGCUUGCUAUU-----GCACAC-CGG-CU--CGCUGAA---------GCUUGCGAUUCCCUCAAA-CGUAG---GGAACUCG-GGCGUAUUAUUUAUGGUAG---CGGGG-AUCUGCGUU--CGCGCUAUCCC
X53544.1/117-281                        AUACUUACCUGGCGUA-GAGGUUAACC---GUGAUCAC-GAAG-GCGGU-UCCUCCG--GAG-UGAGGCUUGGCCAUU-----GCACCU-CGG-CU-GAGUUGAC---------CUCUGCGAUUAUUCCUAA-UGUGA--AUA-ACUCG-UGCGCGUAAUUUUUGGUAG---CCGGG-AAUGGCGUU--CGCGCCGUCCC
X53543.1/383-547                        AUACUUACCUGGCGUA-GAGGUUAACC---GUGAUCAC-GAAG-GCGGU-UCCUCCG--GAG-UGAGGCUUGGCCAUU-----GCACCU-CGG-CU-GAGUUGAC---------CUCUGCGAUUAUUCCUAA-UGUGA--AUA-ACUCG-UGCGUGUAAUUUUUGGUAG---CCGGG-AAUGGCGUU--CGCGCCGUCCC
X53544.1/1653-1817                      AUACUUACCUGGCGUA-GAGGUUAACC---GUGAUCAC-GAAG-GCGGU-UCCUCCG--GAG-UGAGGCUUGGCCAUU-----GCACCU-CGG-CU-GAGUUGAC---------CUCUGCGAUUAUUCCUAA-UGUGA--AUA-ACUCG-UGCGUGUAAUUUUUGGUAG---CCGGG-AAUGGCGUU--CGCGCCGUCCC
X01725.1/69-233                         AUACUUACCUGGCGUA-GAGGUUAACC---GUGAUCAC-GAAG-GCGGU-UCCUCCG--GAG-UGAGGCUUGGCCAUU-----GCACCU-CGG-CU-GAGUUGAC---------CUCUGCGAUUAUUCCUAA-UGUGA--AUA-ACUCG-UGCGUGUAAUUUUUGUUAG---CCGGG-AAUGGCGUU--CGCGCCGUCCC
X53541.1/1195-1359                      AUACUUACCUGGCGUA-GAGGUUAACC---GUGAUCAC-GAAG-GCGGU-UCCUCCG--GAG-UGAGGCUUGGCCAUU-----GCACCU-CGG-CU-GAGUUGAC---------CUCUGCGAUUAUUCCUAA-UGUGA--AUA-ACUCG-UGCGUGUAAUUUUUGUUAG---CCGGG-AAUGGCGUU--CGCGCCGUCCC
X53542.1/2592-2756                      AUACUUACCUGGCGUA-GAGGUUAACC---GUGAUCAC-GAAG-GCGGU-UCCUCCG--GAG-UGAGGCUUGGCCAUU-----GCACCU-CGG-CU-GAGUUGAC---------CUCUGCGAUUAUUCCUAA-UGUGA--AUA-ACUCG-UGCGUGUAAUUUUUGUUAG---CCGGG-AAUGGCGUU--CGCGCCGUCCC
J01156.1/9-172                          AUACUUACCUGGCGUA-GAGGUUAACC---GUGAUCAC-GAAG-GCGGU-UCCUCCG--GAG-UGAGGCUUGGCCAUU-----GCACCU-CGG-CU-GAGUUGAC---------CUCUGCGAUUAUUCCUAA-UGUGA--AUA-ACUCG-UGCGUGUAAUUUUUGGUAG--CCGGGA-A-UGGCGUU--CGCGCCG-UCC
X04257.1/1-164                          AUACUUACCUGGCGUA-GAGGUUAACC---GUGAUCAC-GAAG-GCGGU-UCCUCCG--GAG-UGAGGCUUGGCCAUU-----GCACCU-CGG-CU-GAGUUGAC---------CUCUGCGAUUAUUCCUAA-UGUGA--AUA-ACUCG-UGCGUGUAAUUUUUGGUAG--CCGGGA-A-UGGCGUU--CGCGCCG-UCC
K00787.1/2-165                          AUACUUACCUGGCGUA-GAGGUUAACC---GUGAUCAC-GAAG-GCGGU-UCCUCCG--GAG-UGAGGCUUGGCCAUU-----GCACCU-CGG-CU-GAGUUGAC---------CUCUGCGAUUAUUCCUAA-UGUGA--AUA-ACUCG-UGCGUGUAAUUUUUGGUAG--CCGGGA-A-UGGCGUU--CGCGCCG-UCC
AJ243001.2/347-509                      AUACUUACCUGGCACA-GGGGA-UACC---ACGAUCAC-CAAG-GUGGU-UCCCCC---AAG-ACGAGGCUCACCAUU-----GCACUC-CGG-UG-GCGCUGAC--------CCUUG-CAAUGACCCCAAA-UGUGG--GUU-ACUCG-GGUGUGUAAUUUCUGUUAG--CUGGGG--ACUGCGUU--CGCGCUUUCCC
AY198212.1/1-163                        AUACUUACCUGGCACA-GGGGA-UACC---ACGAUCAC-CAAG-GUGGU-UCCCCC---AAG-ACGAGGCUCACCAUU-----GCACUC-CGG-UG-GCGCUGAC--------CCUUG-CGAUGACCCCAAA-UGUGG--GUU-ACUCG-GGUGUGUAAUUUCUGUUAG--CUGGGG--ACUGCGUU--CGCGCUUUCCC
AY198211.1/1-163                        AUACUUACCUGGCACA-GGGGA-UACC---ACGAUCAC-CAAG-GUGGU-UCCCCC---AAG-ACGAGGCUCACCAUU-----GCACUC-CGG-UG-GCGCUGAC--------CCUUG-CGAGGACCCCAAA-UGUGG--GUU-ACUCG-GGUGUGUAAUUUCUGUUAG--CUGGGG--ACUGCGUU--CGCGCUUUCCC
AY198213.1/1-163                        AUACUUACCUGGCACA-GGGAA-UACC---ACGAUCAC-UAAG-GUGGU-UCCCCCA--AGG-CGAGGCUCA-CCAUU-----GCACCU-CGG--UGGCGCUGAC---------CCUUGCGAUGACCCCAAA-UGUGG--GUU-ACUCG-GGUGUGUAAUUUCUGUUAG--CUGGGG--ACUGCGUU--CGCGCUUUCCC
AY198214.1/1-163                        AUACUUACCUGGCACA-GGGGA-UACC---ACGAUCAC-UAAG-GUGGU-UCCCCCA--AGG-CGAGGCCCC-CCAUU-----GCACUU-CGG-UG-GUGUUGAC---------CCUUGCGAUGAUCCCAAA-UGUGG--AUU-ACUCG-GGUGUGUAAUUUUUGGUAG--CUGGGG--ACUGCGUU--CGCGCUAUCCC
M73768.1/361-517                        AAACUUACCUGGCGCC-GGGUU-CAGG---GUGAUCAG-CAAG-GCUCC-GACCCCA--GGU-GGAGGCUCA-GCAUU-----GCACUC-CGC--U-GUGUUGAA---------GCCUGCGACGGACUCUAA--UCGG--GUUCGCUCG-GGUGCAUAGUUUUUGCCAG--UGGGGA-----GCCUU--CGGGC--GUCC
L25919.1/1-159                          AAACUUACCUGGCGCC-GGGUU-CAGG---GUGAUCAG-GAAU-GCUCU-GACCCCG--GGU-GGAGGCUCA-CCAUU-----GCACUU-CGG--U-GGGUUGAA---------ACUUGCGACGAACCCUAA--UUGG--GUGCGCUCG-GACGCGUAGUUUUUGUCAG--UGGGGA----GGUCUU--CGGAUCA-UCC
L25914.1/1-159                          AAACUUACCUGGCGCC-GGGUU-CAGG---GUGAUCAG-GAAU-GCUCU-GACCCCG--GGU-GGAGGCUCA-CCAUU-----GCACUU-CGG--U-GGGUUGAA---------ACUCGCGACGAACCCUAA--UUGG--GCUCGCUCG-GACGCGUAGUUUUUGUCAG--UGGGGA----GGUCUU--CGGAUCA-UCC
L25921.1/1-159                          AAACUUACCUGGCGCC-GGGUU-CAGG---GUGAUCAG-GAAU-GCUCU-GACCCCG--GGU-GGAGGCUCA-CCAUU-----GCACUU-CGG--U-GGGUUGAA---------ACUCGCGACGAACCCUAA--UUGG--GUGCGCUCG-GGCGUGUAGUUUUUGUCAG--UGGGGA----GGUCUU--CGGAUCA-UCC
L25916.1/1-159                          AAACUUACCUGGCGCC-GGGUU-CAGG---GUGAUCAG-GAAU-GCUCU-GACCCCG--GGU-GGAGGCUCA-CCAUU-----GCACUU-CGG--U-GGGUUGAA---------ACUCGCGACGAACCCUAA--UUGG--GUGCGCUCG-GGCGUGUAGUUUUUGUCAG--UGGGGA---GGUCUCA--C-AGUCA-UCC
L25915.1/1-159                          AAACUUACCUGGCGCC-GGGUU-CAGG---GUGAUCAG-GAAU-GCUCU-GACCCCG--GGU-GGAGGCUCA-CCAUU-----GCACUU-CGG--U-GGGUUGAA---------ACUCGCGACGAACCCUAA--UUGG--GUGCGCUCG-GGCGUGUAGUUUUUGUCAG--UGGGGA---GGUCUCA--C-AGUCC-UCC
L25917.1/1-158                          AAACUUACUUGGCGCC-GGGAC-CAGG---GUGAUCAC-GAAU-GCCCU-GGCCCCA--GGU-GGAGGCUCG-CCAUU-----GCACUC-CGG--C-GUGUUGAA---------GCCUGCGACGAUCCCUAA--UUGG--GUGCGCUCG-GACGCGUAGUUUUUGUCAG--UGGGGA----GGUCUU--CGGAUCA-UCC
DQ092354.1/1778-1949                    AUACUUACCUGACGGU-GAAGC-AAAC---CUGGUCAA-CAUG-GGGCU-UCUUCC---AGGGUGAGGCUUUUGCAUU-----GCACUU-CGCCUG-G-GCUGACUCUGGGUUGACUG-CGAUUACCGCUAA-CGUCG--GUA-ACUCG-ACCGUACACUUUCUGGCUG--UGGGGG--CCUGCGUU--GGCGCUCGCCC
DQ058356.1/1-168                        AUGUCUUCGUGGCGGG-GGAGA-GACGCUGUUGGUCCU-GAUAAAGUGU-UUUUCUU-GGGG-GAGGGUUUUUACUUU-----GUGUUU-GGGAUG-UGUUUGCU---------CCCG-CGAUUUCCCCGA---AUGA--GAAAACUCG-GCUGCAUAACUUGUGGUAG--UGGGGG--ACUGCUUU--UGCGCUUUUCU
L22246.1/3195-3356                      AGACUUAUUUGGUUGG-GAGGA-UUUC---GUAAUCAG--AAG-GCGGG-ACCUCCA--UGG-CGAGGCUUGGUCAUU-----GCACUUUCGA-CC-AGGCUGAC---------CAGUGUGGCAGACCCGAG--UUGGGAUUGG--CCA-ACAGCAUAAUUUUUGCGUU---UGGGG-A-CAGCGUU--CGCGCUU-CCC
L22246.1/2071-2235                      AAACUAACCUGGCUGG-GGGGCAUCUC---GCGAUCAU-GAAG-GCGGG-ACCUCCA--UGG-UGAGGUCUGGUCAUU-----GCACUUCCGA-CC-AGGCUGAC---------CUGUGUGGCAGUCCCGAG--UUGGGAUUGG--CCA-ACAGCAUAAUUUUUGCGUU----UGGG-GACAGCGUU--CGCGCUUCCCC
L22246.1/5535-5699                      AAACUAACCUGGCUGG-GAGGCAUCUC---GCGAUCAU-GAAG-GCGGG-ACCUCCA--UGG-CGAGGUUUGGCCAUU-----GCACUUUCGG-CC-AGGCUGAC---------CCGUGUGGCAGUCCCGAG--UUGGGAUUGG--CCA-ACAGCAUAAUUUUUGCGUU----UGGG-GACAGCGUU--CGCGCUUCCCC
L22246.1/4551-4714                      AAACUUACCUGGCUGG-GAGGC-UUUC---GUGAUCAU-GAAG-GCGGA-ACCUCCA--UGG-UGAGGCUUGGUCAUU-----GCACUUUCGA-CC-AGGCUGAC---------CCGUGUGGCAGUCCCGAG--UUGGGAUUGG--CCA-ACAGCAUAAUUUUUGCGUU----UGGG-GACAGCGUU--CGCGCUUCCCC
X51371.1/181-345                        AAACUUACCUGGCUGG-GGGUUAUUUC---GCGAUCAC-AAAG-GCGGA-AUCCCCA--UGG-UUAGGCCUACCCAUU-----GCACUUUUGGUGC-GGGCUGAC---------CUGUGUGGCAGUCUCGAG-UUGAG--AUU-CGCCA-ACAGCUUAAUUUUUGCGUA--UCGGGG---CUGCGUG--CGCGCGG-CCC
X70869.1/1-161                          AUACUUACCUGGCCCG-CUUCU-CGAG---GUGGUCAC-CAUG-GCCUC-GGUUGU---GUG-GUCGGUCUUCACCUU-----GCACUU-UGU-GA-GGGCCUUC---------CGCA-GUCGGCCCUUCG-----GG--UGU-CCGGC-AGGGCUAAAUUUUUGUUAG--GCUGAGGACCCGCGCU-AUGCGCGGCCUC
X06880.1/1-162                          AUACUUACCUGUCCGG-CCUGC-GACC---UCGAGCAA-GAAG-GGGGU-CUAGGUA--GUG-CUUGUACCUCGCCUU-----GUACUA-UGCUUG-GGGUA--G---------CGCUGUGUGCGGGGCAA---GUCC---UCGUUACA-ACGGAAUAAUUUCUGGCAG--GCCGUU-GCACGCGCU--UGCGCGUCCUC
M29062.1/238-387                        UUACUUACCUGGCAUG-AGUUU--CUG---CAGCACAA-GAAU-UGUGG-AGACUCA--GUU-AUUUGUCUUGGCAUU-----GCACUG-AGCCCU-G-ACGAAU---------AACUGUGGACUGGCUAA----GGU--CAG-CUCCG-GAUGCAUCAUUUUUGAGUU--CGU-----CCCUCAUU----UGGGGC---
X63783.1/596-756                        UAAAUUACAAUGUUGU-AGUUA-GCUA---UAUAUCAA-AAAA-UAUAG-CAACUA---AGG--UGGAGCAAGUCAUU-----GUACUAAAGAUGU-UUGUAAUA---------CCUUG--AUGUUCCCGC----UGG--GAGCAAUA--ACAACAAAAUUUCUGAUUG--GAAAUA-G-UCAUUAAACUAACUGGCUAU
X63783.1/2024-2186                      UUACUUACCUGGCUGG-AGUUU-GCUA---UCGAUCAU-GAAG-GGUAG-CGGCUU---AGG-GUGGAGCAGGUCAUU-----GCACAAAAGAUGU-CUGUAAUA---------CCUUAUUGUUC-CCCGU---GCGG---GGAACCGAAACAGCACAAUUUCUGCUAG--GGGAGA-CGUGCACUU--A-GUGCUGUCU
X58845.1/1-161                          --ACUUACCUGGCUGG-AGUUU-GCUA---UCGAUCAU-GAAG-GGUAG-CGGCUU---AGG-GUGGAGCAGGUCAUU-----GCACAAAAGAUGU-CUGUAAUA---------CCUUAUUGUUC-CCCGU---GCGG---GGAACCGAAACAGCACAAUUUCUGCUAG--GGGAGA-CGUGCACUU--A-GUGCUGUCU
X63783.1/1394-1556                      UUACUUACCUGGCUGG-AGUUA-GCUA---UCGAUCAU-GAAG-GGUAG-CGGCUU---AGG-GUGGAGCAGGUCAUU-----GCACAAAAGAUGU-CUGUAAUA---------CCUUAUUGUUC-CCCGU---GCGG---GGAACCGAAACAGCACAAUUUCUGCUAG--GGGAGA-CGUGCACUU--A-GUGCUGUCU
X13842.1/1-150                          ------ACCUGGCCGG-GGGAA-GUCG---GUGAUCAA-GACG-GCCGA-GUCCCU---AGU-UGGGGAACCUCUCCU-----GCACUU-GAGAGG-G-GCUCCU---------UCUA-UGAUUG-CCUUC-----GG--GUA-ACUCA-ACGGCAUAAUUUGUGAUAG--CGUGGG---GUGCGCU-UGUCGCGC-CCU
X13841.1/396-551                        AUACAUACCUGGCCGG-GGGAA-GUCG---GUGAUCAA-GACG-GCCGA-GUCCCU---AGU-UGGGGUACCUCUCCU-----GCACUU-GAGAGG-G-GCCCCU---------UCUA-UGAUUG-CCUUC-----GG--GUA-ACUCA-ACGGCAUAAUUUGUGAUAG--CGUGGG---GUGCGCU-UGUCGCGC-CCU
X69329.1/1-160                          AUACUUACCUGGACGG-GGUCG-ACGG---GCGAUCAA-GAAG-GCCCG-UGGCU----GGG-UCAAUGGCUCACAUU-----GCACUU-GGUGGGUG-CGUUGG---------CCCA-CCAUCUCCCCAA---GUGG---GAGAGUGG-ACGUCAUAAUUUGUGCUAG---AGGGG-GUACGCGUU--CGCGCGGCCCC
S72336.1/2-161                          AUACUUACCUGGACGG-GGUCG-ACGG---GCGAUCAA-GAAG-GCCCG-UGGCU----GGG-UCAAUGGCUCACAUU-----GCACUU-GGUGGGUG-CGUUGG---------CCCA-CCAUCUCCCCAA---GUGG---GAGAGUGG-ACGUCAUAAUUUGUGCUAG---AGGGG-GUACGCGUU--CGCGCGGCCCC
X69334.1/1-160                          AUACUUACCUGGACGG-GGUCG-ACGA---GCGAUCAA-GAAG-GCUCG-UGGCCU---GGG-UCAGUGGUCCACAUU-----GCACUU-GGU-GG-AUGCCUGG---------CCCA-CCAUCUCCCCAA---GUGG---GAGAGUGG-AUGUCAUAAUUUGUGGUAG---AGGGG-GUACGCGUU--CGCGCGGCCCC
X69333.1/1-157                          ----UUACCUGGACGG-GGUCG-ACGA---GCGAUCAA-GAAG-GCUCG-UGGCCU---AGG-UUAGUGGCCCACAUU-----GCACUU-GGUGGGUG-CGCUGG---------CCUA-UCAUCUCCCCAA---GUGG---GAGAGUGA-ACGUCAUAAUUUGUGGUAG---AGGGG-GUACGCGUU--CGCGCGGCCCC
X69328.1/1-158                          --ACUUACCUGGACGG-GGUCG-ACGG---CCGAUCAA-GAAG-GGUCG-UGGCCU---AGA--UCAAUGGUCACAUU-----GCACCU-GGUGAG-CGCGUUGG---------CCUA-CCAUCUCCCCAA---GUGG---GAGAGUGG-ACGUCGUAAUUUGUGGUAG---AGGGG-GUACGCGUU--CGCGCGGCCCC
AY222070.1/1-157                        AUACUUACCUGGACGG-GGUCG-UUGG---GUGAUCAU-GAAG-AUCCG-UGGCCUA--GCG-UGGUGGC---UUCCU-----GCACUU-GAGGU----GGCUAA---------CGCAAAGGU-CACCCCAA--GUGG---GAGAUCCU-GCGUCAUUAUUUGUUGCCU---UGGGG-GCCUGCGUU--CGCGCAGCCCC
X15928.1/1-160                          AUACUUACCUGGAUGG-GGUCA-AUGG---GUGAUCAU-GAAG-GCCCA-UGGCU----AGG-CAAGUGACUUCCAUU-----GCACUU-AGGAGG-GGUGCUUG---------CCUA-AGGUCUACCCAA---GUGG--UGG-AACCU-ACAUCAUAAUUUGUUGCUG--UGGGGG--CCUGCGUU--CGCGCGGCCCU
X15927.1/1-160                          AUACUUACCUGGAUGG-GGUCA-AUGG---GUGAUCAA-GAAG-GCCCA-UGGCU----AGG-CAAGUGACCUCCAUU-----GCACUU-AGGAGG-GGUGCUAG---------CCUA-AGGUCUACCCAA---GUGG--UGG-AGCCU-ACAUCAUAAUUUGUUGCUG--UGGGGG--CCUGUGUU--CGCGCGGCCCC
X15926.1/1-161                          AUACUUACCUGGAUGG-GGUCG-AUGG---GUGAUCAU-GAAG-GCCCA-UGGCU----AGG-AUUGUGACCUCCAUU-----GCACUU-AGGAGG-GGUGCUUU---------CCUA-AGGUCUACCCAA---GUGG--UGG-AGCCU-ACAUCAUAAUUUGUUGCCU--GAGGGG-GCCUGCGUU--CGCGCGGCCCC
X06809.1/232-392                        AUACUUACCUGGACGG-GGUCA-AUGG---AUGAUCAA-GAAG-GUCCA-UGGCCU---AGG-GAAGUAACCUCCAUU-----GCACUG-AGGAGG-GGUGCCUU---------UCUA-AGGUCUGUCCAA---GUGA--CAG-AGCCU-ACGUCAUAAUUUGUGGUAG--UGGGGG--CCUGCGUU--CGCGCGGCCCC
URS000032B6B6_9606/1-164                AUACUUACCUGGCAGG-GGAGA-UACC---AUGAUCAC-GAAG-GUGGU-UUUCCCA--GGG-CGAGGCUUAUCCAUU-----GCACUC-CGG-AU-GUGCUGAC---------CCCUGCGAUUUCCCCAAA-UGUGG--GAA-ACUCG-ACUGCAUAAUUUGUGGUAG--UGGGGG--ACUGCGUU--CGCGCUUUCCC
#=GR URS000032B6B6_9606/1-164 6QX9_1_SS ...........((((..(((((...((...((............))))..))))).(..(((..(.(((.(((((................)).)).).)))..).........)))).(((((((((.(.....)))..))).).)))..)))).................(((((..(..(((......)))..))))
#=GC SS_cons                            :::::::::::((((<.<<<<<.-<<<...<<______.____.>>>>>.>>>>>><..<<<.-<-<<<-<<<<<___.....______._>>->>.>->>>-->.........>>>>,<<<<<<-<<____..__>>..->>->->>>.,))))::::::::::::::..:<<<<<.-<-<<<<__..__>>>>->>>>
#=GC RF                                 AUACUUACCUGGccgg.GGgca.accg...gcGAUCAa.GAAG.gccgg.ugcCCca..ggg.ugaggcuccccCAUU.....GCACUu.cGgagg.gugccgac.........cccuGcGguucccCCaAA..GUGg..ugaaaccCg.AcggCAUAAUUUgUGgUAG..ucgGGG.gaccGcgUU..cGcgCguuCCC
#=GC RNA_structural_elements            ==========[H5p][================Stem=loop=1============][=========================Stem=loop=2========================]=[=======Stem=loop=3==========]==[H3p]================[==========Stem=loop=4======

X06810.1/261-421                        UUC
X14417.1/177-340                        UAC
Z11883.1/3441-3603                      UAG
X14419.1/178-338                        UGC
X14416.1/171-331                        UGC
X14415.1/175-335                        UGC
X14414.1/152-312                        UGC
Z11883.1/2839-2998                      UAC
Z11883.1/1496-1656                      UAC
Z11883.1/361-521                        UAU
Z11882.1/353-512                        CUG
Z11881.1/1515-1675                      ACC
Z11881.1/315-475                        GCC
Z11881.1/2581-2742                      UAC
K02430.1/690-853                        CUG
X12936.1/575-738                        CUG
V00590.1/1-162                          CUG
M28012.1/108-271                        CUG
M28013.1/108-271                        CUG
V00591.1/394-557                        CUG
M38483.1/1-164                          CUG
M14387.1/399-562                        CUG
K00788.1/2-165                          CUG
J00318.1/433-596                        CUG
K00529.1/225-388                        CUG
J00645.1/51-213                         CUU
M14585.1/106-268                        CUG
M14586.1/106-268                        CUG
M14587.1/106-268                        CUG
M14385.1/106-268                        CUG
M14386.1/106-268                        CUG
M32270.1/371-535                        CUG
K03128.1/241-77                         CUG
Y00131.1/944-1108                       CUG
V00444.1/1-162                          CUG
X01093.1/329-492                        CUG
J00914.1/146-309                        CUG
X01091.1/442-605                        CUG
X01092.1/374-537                        CUG
X00549.1/150-313                        CUG
X02585.1/923-1086                       CUG
X02585.1/1513-1676                      CUG
M32271.1/288-452                        CUG
M59827.1/771-934                        CUG
V01266.1/1-168                          UCG
DQ058357.1/1-164                        CCU
M27880.1/1-161                          CCU
X04994.1/620-781                        CUA
X01749.1/448-609                        CUA
X04993.1/647-808                        CUA
X56629.1/421-582                        CUA
X75936.1/1034-1195                      CUU
X53544.1/117-281                        GAC
X53543.1/383-547                        GAC
X53544.1/1653-1817                      GAC
X01725.1/69-233                         GAC
X53541.1/1195-1359                      GAC
X53542.1/2592-2756                      GAC
J01156.1/9-172                          CGA
X04257.1/1-164                          CGA
K00787.1/2-165                          CGA
AJ243001.2/347-509                      CUU
AY198212.1/1-163                        CUU
AY198211.1/1-163                        CUU
AY198213.1/1-163                        CUU
AY198214.1/1-163                        CUU
M73768.1/361-517                        CUU
L25919.1/1-159                          CUU
L25914.1/1-159                          CUU
L25921.1/1-159                          CUU
L25916.1/1-159                          CUU
L25915.1/1-159                          CUU
L25917.1/1-158                          UU-
DQ092354.1/1778-1949                    CUU
DQ058356.1/1-168                        GUC
L22246.1/3195-3356                      CGC
L22246.1/2071-2235                      GCC
L22246.1/5535-5699                      GCC
L22246.1/4551-4714                      GCC
X51371.1/181-345                        UGA
X70869.1/1-161                          GGC
X06880.1/1-162                          GGC
M29062.1/238-387                        --A
X63783.1/596-756                        UUC
X63783.1/2024-2186                      CCG
X58845.1/1-161                          CCG
X63783.1/1394-1556                      CCG
X13842.1/1-150                          GCA
X13841.1/396-551                        GCA
X69329.1/1-160                          UGC
S72336.1/2-161                          UGC
X69334.1/1-160                          UGC
X69333.1/1-157                          UGC
X69328.1/1-158                          UAC
AY222070.1/1-157                        CAC
X15928.1/1-160                          CUU
X15927.1/1-160                          CUC
X15926.1/1-161                          CAC
X06809.1/232-392                        UUU
URS000032B6B6_9606/1-164                CUG
#=GR URS000032B6B6_9606/1-164 6QX9_1_SS )).
#=GC SS_cons                            >>:
#=GC RF                                 cgc
#=GC RNA_structural_elements            =]=
//
