Pestivirus 3'UTR without 3'UTR-SL1

The Pestivirus 3'UTR Clan include 3 families with diferent host, RF04323_Pestivirus-3UTR-SLIV-SLII-BVDV-1 includes bovine viral diarrhea viruses (BVDV-1), while RF04324_Pestivirus-3UTR-SLIV-SLIII-SLII-CSFV includes classical swine fever virus (CSFV) and RF04325_Pestivirus-3UTR-SLIII-scrofae includes Atypical porcine pestivirus like Sus scrofa.

This clan contains 3 families and the total number of sequence regions in the clan is 1.

Literature references

1. Pankraz A, Thiel HJ, Becher P, J Virol. 2005;79:9119-9127.: Essential and nonessential elements in the 3' nontranslated region of Bovine viral diarrhea virus. 15994806
2. Kokkonos KG, Fossat N, Nielsen L, Holm C, Hepkema WM, Bukh J, Scheel TKH, Nucleic Acids Res. 2020;48:5555-5571.: Evolutionary selection of pestivirus variants with altered or no microRNA dependency. 32374844
3. Forth JH, Calvelage S, Fischer M, Hellert J, Sehl-Ewert J, Roszyk H, Deutschmann P, Reichold A, Lange M, Thulke HH, Sauter-Louis C, Hoper D, Mandyhra S, Sapachova M, Beer M, Blome S, Emerg Microbes Infect. 2023;12:2146537.: African swine fever virus - variants on the rise. 36356059

Members

This clan contains the following 3 member families:

Pestivirus-3UTR-SLIV-SLII-BVDV-1 Pestivirus-3UTR-SLIV-SLIII-SLII-CSFV Pestivirus-3UTR-SLIII-scrofae

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family	Num. regions	Alignment
Pestivirus-3UTR-SLIII-scrofae (RF04325)	0 (0.0%)	View
Pestivirus-3UTR-SLIV-SLIII-SLII-CSFV (RF04324)	0 (0.0%)	View
Pestivirus-3UTR-SLIV-SLII-BVDV-1 (RF04323)	1 (100.0%)	View