# Species tree for RF03085 # Generated from Rfam version 14.10 | +--Bacteria (211) | | | +--Actinobacteria (14) | | | | | +--Actinobacteridae (14) | | | | | +--Actinomycetales (11) | | | | | | | +--Corynebacterineae (3) | | | | | | | | | +--Nocardiaceae (2) | | | | | | | | | | | +--Nocardia farcinica IFM 10152 (2) | | | | | | | | | +--Mycobacteriaceae (1) | | | | | | | | | +--Mycobacterium brisbanense (1) | | | | | | | +--Micrococcineae (6) | | | | | | | | | +--Micrococcaceae (1) | | | | | | | | | | | +--Rothia nasimurium (1) | | | | | | | | | +--Brevibacteriaceae (1) | | | | | | | | | | | +--Brevibacterium sp. MN-6-a (1) | | | | | | | | | +--Microbacteriaceae (1) | | | | | | | | | | | +--Rathayibacter toxicus (1) | | | | | | | | | +--Sanguibacteraceae (2) | | | | | | | | | | | +--Sanguibacter keddieii DSM 10542 (2) | | | | | | | | | +--Promicromonosporaceae (1) | | | | | | | | | +--Cellulosimicrobium funkei (1) | | | | | | | +--Pseudonocardineae (1) | | | | | | | | | +--Actinophytocola sp. QAIII60 (1) | | | | | | | +--Actinomycineae (1) | | | | | | | +--Actinomycetaceae (1) | | | | | | | +--Actinomyces sp. oral taxon 175 str. F0384 (1) | | | | | +--Bifidobacteriales (3) | | | | | +--Bifidobacteriaceae (3) | | | | | +--Bifidobacterium pseudocatenulatum (1) | | | | | +--Bifidobacterium adolescentis ATCC 15703 (2) | | | +--unclassifiedBacteria (6) | | | | | +--bacterium P201 (1) | | | | | +--Bacteriacandidatephyla (5) | | | | | +--CandidatusAtribacteria (1) | | | | | | | +--Candidatus Atribacteria bacterium 4572_76 (1) | | | | | +--Patescibacteriagroup (3) | | | | | | | +--Parcubacteriagroup (3) | | | | | | | +--Candidatus Moranbacteria bacterium GW2011_GWE1_35_17 (1) | | | | | | | +--Candidatus Moranbacteria bacterium GW2011_GWA2_39_41 (1) | | | | | | | +--Candidatus Moranbacteria bacterium GW2011_GWC2_40_12 (1) | | | | | +--candidate division TA06 bacterium 34_109 (1) | | | +--Proteobacteria (56) | | | | | +--Alphaproteobacteria (11) | | | | | | | +--Rhizobiales (1) | | | | | | | | | +--Rhizobiaceae (1) | | | | | | | | | +--Rhizobium/Agrobacteriumgroup (1) | | | | | | | | | +--Rhizobium sp. 58 (1) | | | | | | | +--Rhodospirillales (4) | | | | | | | | | +--Rhodospirillaceae (4) | | | | | | | | | +--Magnetospira sp. QH-2 (1) | | | | | | | | | +--Magnetospirillum magnetotacticum MS-1 (1) | | | | | | | | | +--Haematospirillum jordaniae (1) | | | | | | | | | +--Magnetospirillum moscoviense (1) | | | | | | | +--Sphingomonadales (6) | | | | | | | +--Sphingomonadaceae (4) | | | | | | | | | +--Sphingobium japonicum UT26S (1) | | | | | | | | | +--Citromicrobium sp. RCC1885 (1) | | | | | | | | | +--Novosphingobium sp. SCN 63-17 (1) | | | | | | | | | +--Sphingobium chlorophenolicum L-1 (1) | | | | | | | +--Erythrobacteraceae (2) | | | | | | | +--Erythrobacter longus (1) | | | | | | | +--Altererythrobacter sp. 66-12 (1) | | | | | +--Gammaproteobacteria (28) | | | | | | | +--Alteromonadales (1) | | | | | | | | | +--Alteromonadaceae (1) | | | | | | | | | +--Marinobacter sp. T13-3 (1) | | | | | | | +--unclassifiedGammaproteobacteria (4) | | | | | | | | | +--Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_38_11 (1) | | | | | | | | | +--Sedimenticola thiotaurini (1) | | | | | | | | | +--Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_45_12 (1) | | | | | | | | | +--Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_38_14 (1) | | | | | | | +--Legionellales (9) | | | | | | | | | +--Legionellales bacterium RIFCSPHIGHO2_12_FULL_35_11 (1) | | | | | | | | | +--Legionellaceae (8) | | | | | | | | | +--Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (2) | | | | | | | | | +--Legionella londiniensis (1) | | | | | | | | | +--Legionella sp. 40-6 (2) | | | | | | | | | +--Legionella nautarum (1) | | | | | | | | | +--Legionella spiritensis (1) | | | | | | | | | +--Legionella israelensis (1) | | | | | | | +--Pasteurellales (1) | | | | | | | | | +--Pasteurellaceae (1) | | | | | | | | | +--Actinobacillus minor NM305 (1) | | | | | | | +--Xanthomonadales (1) | | | | | | | | | +--Rhodanobacteraceae (1) | | | | | | | | | +--Frateuria (1) | | | | | | | | | +--Frateuria aurantia DSM 6220 (1) | | | | | | | +--Thiotrichales (1) | | | | | | | | | +--Thiotrichaceae (1) | | | | | | | | | +--Thiothrix lacustris (1) | | | | | | | +--Oceanospirillales (8) | | | | | | | | | +--Oceanospirillum linum (1) | | | | | | | | | +--Halomonadaceae (7) | | | | | | | | | +--Halomonas sp. BC04 (1) | | | | | | | | | +--Salinicola sp. MIT1003 (1) | | | | | | | | | +--Halomonadaceae bacterium T82-2 (1) | | | | | | | | | +--Halomonas chromatireducens (1) | | | | | | | | | +--Halomonas huangheensis (1) | | | | | | | | | +--Halomonas subglaciescola (1) | | | | | | | | | +--Halomonas sp. PBN3 (1) | | | | | | | +--Pseudomonadales (3) | | | | | | | +--Moraxellaceae (3) | | | | | | | +--Acinetobacter (3) | | | | | | | +--Acinetobacter nectaris CIP 110549 (1) | | | | | | | +--Acinetobacter baumannii (1) | | | | | | | +--Acinetobactercalcoaceticus/baumanniicomplex (1) | | | | | | | +--Acinetobacter baumannii SDF (1) | | | | | +--Betaproteobacteria (9) | | | | | | | +--Burkholderiales (4) | | | | | | | | | +--Comamonadaceae (1) | | | | | | | | | | | +--CandidatusSymbiobacter (1) | | | | | | | | | | | +--Candidatus Symbiobacter mobilis CR (1) | | | | | | | | | +--Oxalobacteraceae (3) | | | | | | | | | +--Janthinobacterium sp. Marseille (2) | | | | | | | | | +--Noviherbaspirillum sp. Root189 (1) | | | | | | | +--Ferrovales (1) | | | | | | | | | +--Ferrovaceae (1) | | | | | | | | | +--Ferrovum sp. Z-31 (1) | | | | | | | +--Rhodocyclales (1) | | | | | | | | | +--Rhodocyclaceae (1) | | | | | | | | | +--Thauera chlorobenzoica (1) | | | | | | | +--Neisseriales (1) | | | | | | | | | +--Chromobacteriaceae (1) | | | | | | | | | +--Vogesella sp. LIG4 (1) | | | | | | | +--Nitrosomonadales (2) | | | | | | | +--Gallionellales bacterium RIFCSPLOWO2_02_FULL_57_47 (1) | | | | | | | +--Gallionellales bacterium RIFCSPHIGHO2_02_FULL_57_16 (1) | | | | | +--Deltaproteobacteria (2) | | | | | | | +--Desulfobacterales (2) | | | | | | | +--Desulfobacteraceae (2) | | | | | | | +--Desulfatibacillum alkenivorans AK-01 (2) | | | | | +--delta/epsilonsubdivisions (6) | | | | | +--Epsilonproteobacteria (2) | | | | | | | +--Campylobacterales (1) | | | | | | | | | +--Helicobacteraceae (1) | | | | | | | | | +--Sulfurimonas sp. RIFOXYD2_FULL_37_8 (1) | | | | | | | +--unclassifiedEpsilonproteobacteria (1) | | | | | | | +--Sulfurovum sp. AS07-7 (1) | | | | | +--Deltaproteobacteria (4) | | | | | +--Desulfuromonadales (4) | | | | | +--Desulfuromonadaceae (1) | | | | | | | +--Malonomonas (1) | | | | | | | +--Malonomonas rubra DSM 5091 (1) | | | | | +--Desulfuromonadales bacterium GWD2_54_10 (1) | | | | | +--Desulfuromonadales bacterium GWD2_61_12 (2) | | | +--Bacteroidetes (37) | | | | | +--Sphingobacteriia (1) | | | | | | | +--Sphingobacteriales (1) | | | | | | | +--Saprospiraceae (1) | | | | | | | +--Haliscomenobacter hydrossis DSM 1100 (1) | | | | | +--Bacteroidia (35) | | | | | | | +--Bacteroidales (35) | | | | | | | +--Porphyromonadaceae (4) | | | | | | | | | +--Odoribacter splanchnicus DSM 20712 (1) | | | | | | | | | +--Parabacteroides sp. D13 (2) | | | | | | | | | +--Porphyromonas uenonis 60-3 (1) | | | | | | | +--Candidatus Symbiothrix dinenymphae (1) | | | | | | | +--Bacteroidaceae (12) | | | | | | | | | +--Bacteroides dorei 5_1_36/D4 (1) | | | | | | | | | +--Bacteroides sp. 9_1_42FAA (1) | | | | | | | | | +--Bacteroides fragilis NCTC 9343 (2) | | | | | | | | | +--Bacteroides stercoris ATCC 43183 (1) | | | | | | | | | +--Bacteroides plebeius DSM 17135 (1) | | | | | | | | | +--Bacteroides helcogenes P 36-108 (1) | | | | | | | | | +--Bacteroides coprophilus DSM 18228 (2) | | | | | | | | | +--Bacteroides salanitronis DSM 18170 (1) | | | | | | | | | +--Bacteroides fragilis 3_1_12 (1) | | | | | | | | | +--Bacteroides uniformis ATCC 8492 (1) | | | | | | | +--Prevotellaceae (18) | | | | | | | +--Prevotella bryantii B14 (3) | | | | | | | +--Prevotella ruminicola 23 (1) | | | | | | | +--Prevotella copri (2) | | | | | | | +--Prevotella copri DSM 18205 (6) | | | | | | | +--Prevotella melaninogenica ATCC 25845 (2) | | | | | | | +--Prevotella multisaccharivorax DSM 17128 (1) | | | | | | | +--Prevotella bergensis DSM 17361 (2) | | | | | | | +--Prevotella timonensis CRIS 5C-B1 (1) | | | | | +--Cytophagia (1) | | | | | +--Cytophagales (1) | | | | | +--Cyclobacteriaceae (1) | | | | | +--Cyclobacterium marinum DSM 745 (1) | | | +--Spirochaetes (2) | | | | | +--Spirochaetia (1) | | | | | | | +--Leptospirales (1) | | | | | | | +--Leptospiraceae (1) | | | | | | | +--Turneriella (1) | | | | | | | +--Turneriella parva DSM 21527 (1) | | | | | +--Spirochaetales (1) | | | | | +--Spirochaetaceae (1) | | | | | +--Treponema succinifaciens DSM 2489 (1) | | | +--Chloroflexi (1) | | | | | +--Anaerolineae (1) | | | | | +--Anaerolineales (1) | | | | | +--Anaerolineaceae (1) | | | | | +--Longilinea arvoryzae (1) | | | +--Firmicutes (21) | | | | | +--Clostridia (15) | | | | | | | +--Clostridiales (15) | | | | | | | +--Lachnospiraceae (1) | | | | | | | | | +--Butyrivibrio fibrisolvens 16/4 (1) | | | | | | | +--Ruminococcaceae (1) | | | | | | | | | +--Faecalibacterium prausnitzii L2-6 (1) | | | | | | | +--ClostridialesFamilyXI.IncertaeSedis (9) | | | | | | | | | +--Anaerococcus lactolyticus ATCC 51172 (1) | | | | | | | | | +--Peptoniphilus harei ACS-146-V-Sch2b (1) | | | | | | | | | +--Peptoniphilus asaccharolyticus DSM 20463 (1) | | | | | | | | | +--Anaerococcus vaginalis ATCC 51170 (2) | | | | | | | | | +--Finegoldia magna ATCC 29328 (2) | | | | | | | | | +--Peptoniphilus duerdenii ATCC BAA-1640 (1) | | | | | | | | | +--Peptoniphilus sp. oral taxon 375 str. F0436 (1) | | | | | | | +--Clostridiaceae (2) | | | | | | | | | +--Clostridium difficile CD196 (1) | | | | | | | | | +--Clostridium difficile QCD-32g58 (1) | | | | | | | +--Eubacteriaceae (2) | | | | | | | +--Eubacterium angustum (1) | | | | | | | +--Eubacterium cellulosolvens 6 (1) | | | | | +--Negativicutes (2) | | | | | | | +--Selenomonadales (2) | | | | | | | +--Veillonellaceae (2) | | | | | | | +--Megasphaera genomosp. type_1 str. 28L (1) | | | | | | | +--Megasphaera sp. UPII 135-E (1) | | | | | +--Lactobacillales (1) | | | | | | | +--Lactobacillaceae (1) | | | | | | | +--Lactobacillus iners DSM 13335 (1) | | | | | +--Bacillales (3) | | | | | +--Bacillaceae (1) | | | | | | | +--Bacillus thermoamylovorans (1) | | | | | +--Paenibacillaceae (2) | | | | | +--Paenibacillus naphthalenovorans (1) | | | | | +--Paenibacillus larvae subsp. larvae BRL-230010 (1) | | | +--Terrabacteriagroup (30) | | | | | +--Actinobacteria (14) | | | | | | | +--Actinobacteria (14) | | | | | | | +--Actinomycetales (1) | | | | | | | | | +--Actinomycetaceae (1) | | | | | | | | | +--Actinomyces (1) | | | | | | | | | +--Actinomyces johnsonii F0510 (1) | | | | | | | +--Corynebacteriales (2) | | | | | | | | | +--Mycobacteriaceae (1) | | | | | | | | | | | +--Mycobacterium sp. 1245111.1 (1) | | | | | | | | | +--Gordoniaceae (1) | | | | | | | | | +--Gordonia (1) | | | | | | | | | +--Gordonia effusa NBRC 100432 (1) | | | | | | | +--Bifidobacteriales (2) | | | | | | | | | +--Bifidobacteriaceae (2) | | | | | | | | | +--Alloscardovia (1) | | | | | | | | | | | +--Alloscardovia omnicolens F0580 (1) | | | | | | | | | +--Bifidobacterium sp. 56_9_plus (1) | | | | | | | +--Micrococcales (9) | | | | | | | +--Micrococcaceae (1) | | | | | | | | | +--Arthrobacter sp. PAMC 25486 (1) | | | | | | | +--Dermabacteraceae (1) | | | | | | | | | +--Brachybacterium sp. SW0106-09 (1) | | | | | | | +--Dermatophilaceae (2) | | | | | | | | | +--Mobilicoccus (1) | | | | | | | | | | | +--Mobilicoccus pelagius NBRC 104925 (1) | | | | | | | | | +--Austwickia (1) | | | | | | | | | +--Austwickia chelonae NBRC 105200 (1) | | | | | | | +--Microbacteriaceae (3) | | | | | | | | | +--Frigoribacterium sp. Leaf172 (1) | | | | | | | | | +--Rathayibacter tanaceti (1) | | | | | | | | | +--Rathayibacter sp. Leaf296 (1) | | | | | | | +--Dermacoccaceae (1) | | | | | | | | | +--Dermacoccus sp. PE3 (1) | | | | | | | +--Promicromonosporaceae (1) | | | | | | | +--Cellulosimicrobium sp. MM (1) | | | | | +--Firmicutes (16) | | | | | +--Clostridia (4) | | | | | | | +--Clostridiales (4) | | | | | | | +--Ruminococcaceae (2) | | | | | | | | | +--Subdoligranulum sp. 60_17 (1) | | | | | | | | | +--Ruminococcus (1) | | | | | | | | | +--Ruminococcus sp. CAG:57 (1) | | | | | | | +--Peptococcaceae (1) | | | | | | | | | +--Desulfosporosinus sp. BRH_c37 (1) | | | | | | | +--Clostridiaceae (1) | | | | | | | +--Clostridium (1) | | | | | | | +--Clostridium acetireducens DSM 10703 (1) | | | | | +--Bacilli (9) | | | | | | | +--Bacillales (9) | | | | | | | +--Alicyclobacillaceae (1) | | | | | | | | | +--Tumebacillus sp. AR23208 (1) | | | | | | | +--Bacillaceae (2) | | | | | | | | | +--Tepidibacillus decaturensis (1) | | | | | | | | | +--Bacillus (1) | | | | | | | | | +--Bacillus azotoformans LMG 9581 (1) | | | | | | | +--Planococcaceae (2) | | | | | | | | | +--Sporosarcina sp. HYO08 (1) | | | | | | | | | +--Jeotgalibacillus malaysiensis (1) | | | | | | | +--Paenibacillaceae (4) | | | | | | | +--Paenibacillaceae bacterium GAS479 (1) | | | | | | | +--Paenibacillus sp. LPB0068 (1) | | | | | | | +--Paenibacillus sp. 32O-W (1) | | | | | | | +--Paenibacillus (1) | | | | | | | +--Paenibacilluslarvae (1) | | | | | | | +--Paenibacillus larvae subsp. larvae DSM 25430 (1) | | | | | +--Firmicutes bacterium CAG:24 (1) | | | | | +--Tissierellia (2) | | | | | +--Tissierellales (1) | | | | | | | +--Tissierellaceae (1) | | | | | | | +--Tissierella (1) | | | | | | | +--Tissierella creatinophila DSM 6911 (1) | | | | | +--unclassifiedTissierellia (1) | | | | | +--Tissierellia bacterium S7-1-4 (1) | | | +--PVCgroup (1) | | | | | +--Verrucomicrobia (1) | | | | | +--Opitutae (1) | | | | | +--Opitutales (1) | | | | | +--Opitutaceae (1) | | | | | +--Opitutaceae bacterium TAV5 (1) | | | +--FCBgroup (43) | | | +--Fibrobacteres (2) | | | | | +--Fibrobacteria (2) | | | | | +--Fibrobacterales (2) | | | | | +--Fibrobacteraceae (2) | | | | | +--Fibrobacter sp. UWH6 (1) | | | | | +--Fibrobacter sp. UWCM (1) | | | +--Bacteroidetes/Chlorobigroup (41) | | | +--Ignavibacteriae (1) | | | | | +--Ignavibacteria (1) | | | | | +--Ignavibacteria bacterium RIFOXYC2_FULL_35_21 (1) | | | +--Bacteroidetes (40) | | | +--Chitinophagia (1) | | | | | +--Chitinophagales (1) | | | | | +--Chitinophagaceae (1) | | | | | +--Niastella sp. SCN 39-18 (1) | | | +--Bacteroidia (36) | | | | | +--Bacteroidales (36) | | | | | +--Rikenellaceae (2) | | | | | | | +--Alistipes (2) | | | | | | | +--Alistipes sp. CAG:831 (2) | | | | | +--Porphyromonadaceae (5) | | | | | | | +--Porphyromonas (1) | | | | | | | | | +--Porphyromonas sp. CAG:1061 (1) | | | | | | | +--Tannerella (4) | | | | | | | +--Tannerella sp. CAG:118 (2) | | | | | | | +--Tannerella sp. oral taxon BU063 isolate Cell 1/3 (1) | | | | | | | +--Tannerella forsythia 92A2 (1) | | | | | +--unclassifiedBacteroidales (1) | | | | | | | +--Bacteroidales bacterium Barb7 (1) | | | | | +--Bacteroidaceae (12) | | | | | | | +--Bacteroides caecimuris (1) | | | | | | | +--Bacteroides sp. An322 (1) | | | | | | | +--Bacteroides sp. 43_108 (2) | | | | | | | +--Bacteroides (8) | | | | | | | +--Bacteroides pyogenes JCM 6292 (1) | | | | | | | +--Bacteroides coprophilus CAG:333 (2) | | | | | | | +--Bacteroides pyogenes JCM 10003 (1) | | | | | | | +--Bacteroides sp. CAG:530 (2) | | | | | | | +--Bacteroides sp. CAG:633 (2) | | | | | +--Prevotellaceae (16) | | | | | +--Alloprevotella (1) | | | | | | | +--Prevotella sp. oral taxon 473 str. F0040 (1) | | | | | +--Prevotella (15) | | | | | +--Prevotella sp. CAG:474 (1) | | | | | +--Prevotella sp. CAG:592 (1) | | | | | +--Prevotella copri CAG:164 (1) | | | | | +--Prevotella sp. CAG:891 (1) | | | | | +--Prevotella sp. CAG:520 (3) | | | | | +--Prevotella sp. oral taxon 306 str. F0472 (1) | | | | | +--Prevotella sp. CAG:5226 (1) | | | | | +--Prevotella sp. CAG:487 (1) | | | | | +--Prevotella sp. CAG:386 (1) | | | | | +--Prevotella sp. CAG:1092 (1) | | | | | +--Prevotella sp. CAG:1058 (1) | | | | | +--Prevotella sp. CAG:279 (1) | | | | | +--Prevotella sp. CAG:732 (1) | | | +--Flavobacteriia (2) | | | | | +--Flavobacteriales (2) | | | | | +--Flavobacteriaceae (2) | | | | | +--Flavobacterium fontis (2) | | | +--unclassifiedBacteroidetes (1) | | | +--Bacteroidetes bacterium GWF2_40_14 (1) | +--Viruses (7) | | | +--dsDNAviruses,noRNAstage (7) | | | +--Caudovirales (6) | | | | | +--Clostridium phage phiC2 (1) | | | | | +--Siphoviridae (3) | | | | | | | +--Mycobacterium phage Whirlwind (1) | | | | | | | +--Mycobacterium phage Redno2 (1) | | | | | | | +--Mycobacterium phage Wanda (1) | | | | | +--Myoviridae (1) | | | | | | | +--Acinetobacter phage Acj61 (1) | | | | | +--Mycobacterium phage Thibault (1) | | | +--Salicola phage CGphi29 (1) | +--unclassified sequences (94)