# Species tree for RF02004 # Generated from Rfam version 14.10 | +--Eukaryota (4) | | | +--Metazoa (2) | | | | | +--Nematoda (1) | | | | | | | +--Chromadorea (1) | | | | | | | +--Oxyurida (1) | | | | | | | +--Oxyuroidea (1) | | | | | | | +--Oxyuridae (1) | | | | | | | +--Syphacia muris (1) | | | | | +--Echinodermata (1) | | | | | +--Eleutherozoa (1) | | | | | +--Echinozoa (1) | | | | | +--Echinoidea (1) | | | | | +--Euechinoidea (1) | | | | | +--Echinacea (1) | | | | | +--Echinoida (1) | | | | | +--Strongylocentrotidae (1) | | | | | +--Strongylocentrotus purpuratus (1) | | | +--Fungi (1) | | | | | +--Chytridiomycota (1) | | | | | +--Chytridiomycetes (1) | | | | | +--Chytridiales (1) | | | | | +--Chytridialesincertaesedis (1) | | | | | +--Batrachochytrium dendrobatidis JAM81 (1) | | | +--Viridiplantae (1) | | | +--Streptophyta (1) | | | +--Embryophyta (1) | | | +--Tracheophyta (1) | | | +--Spermatophyta (1) | | | +--Magnoliophyta (1) | | | +--Liliopsida (1) | | | +--Poales (1) | | | +--Poaceae (1) | | | +--BEPclade (1) | | | +--Ehrhartoideae (1) | | | +--Oryzeae (1) | | | +--Oryza glaberrima (African rice) (1) | +--Bacteria (456) | | | +--Actinobacteria (2) | | | | | +--Actinobacteridae (2) | | | | | +--Actinomycetales (2) | | | | | +--Corynebacterineae (2) | | | | | +--Corynebacteriaceae (1) | | | | | | | +--Corynebacterium glutamicum ATCC 13032 (1) | | | | | +--Mycobacteriaceae (1) | | | | | +--Mycobacterium abscessus (1) | | | +--unclassifiedBacteria (1) | | | | | +--Bacteriacandidatephyla (1) | | | | | +--Patescibacteriagroup (1) | | | | | +--Microgenomatesgroup (1) | | | | | +--Candidatus Woesebacteria bacterium RIFCSPLOWO2_01_FULL_39_25 (1) | | | +--Proteobacteria (2) | | | | | +--Deltaproteobacteria (1) | | | | | | | +--Desulfovibrionales (1) | | | | | | | +--Desulfovibrionaceae (1) | | | | | | | +--Bilophila wadsworthia 3_1_6 (1) | | | | | +--delta/epsilonsubdivisions (1) | | | | | +--Epsilonproteobacteria (1) | | | | | +--Campylobacterales (1) | | | | | +--Campylobacteraceae (1) | | | | | +--Arcobacter porcinus (1) | | | +--Fusobacteria (4) | | | | | +--Fusobacteriia (4) | | | | | +--Fusobacteriales (4) | | | | | +--Fusobacteriaceae (4) | | | | | +--Cetobacterium (4) | | | | | +--Cetobacterium somerae ATCC BAA-474 (4) | | | +--Terrabacteriagroup (254) | | | | | +--Chloroflexi (1) | | | | | | | +--Ktedonobacteria (1) | | | | | | | +--Ktedonobacterales (1) | | | | | | | +--Ktedonobacteraceae (1) | | | | | | | +--Ktedonobacter sp. 13_2_20CM_2_56_8 (1) | | | | | +--Firmicutes (253) | | | | | +--Clostridia (135) | | | | | | | +--Thermoanaerobacterales (1) | | | | | | | | | +--Thermoanaerobacteraceae (1) | | | | | | | | | +--Caldanaerobius (1) | | | | | | | | | +--Caldanaerobius fijiensis DSM 17918 (1) | | | | | | | +--Halanaerobiales (4) | | | | | | | | | +--Halobacteroidaceae (4) | | | | | | | | | +--Halobacteroides (4) | | | | | | | | | +--Halobacteroides halobius DSM 5150 (4) | | | | | | | +--Clostridiales (130) | | | | | | | +--Ruminococcaceae (7) | | | | | | | | | +--Ruminiclostridium (1) | | | | | | | | | | | +--[Clostridium] termitidis CT1112 (1) | | | | | | | | | +--Subdoligranulum sp. 4_3_54A2FAA (1) | | | | | | | | | +--Anaerotruncus sp. G3(2012) (2) | | | | | | | | | +--Ruminococcus (3) | | | | | | | | | +--Ruminococcus sp. CAG:330 (1) | | | | | | | | | +--Ruminococcus flavefaciens 007c (1) | | | | | | | | | +--Ruminococcus sp. CAG:624 (1) | | | | | | | +--Peptostreptococcaceae (1) | | | | | | | | | +--unclassifiedPeptostreptococcaceae (1) | | | | | | | | | +--Peptostreptococcaceae bacterium oral taxon 113 str. W5053 (1) | | | | | | | +--Clostridiaceae (32) | | | | | | | | | +--Clostridium sp. 27_14 (1) | | | | | | | | | +--Clostridium sp. BL8 (7) | | | | | | | | | +--Clostridium sp. C105KSO13 (3) | | | | | | | | | +--Clostridium (17) | | | | | | | | | | | +--Clostridium sp. CAG:470 (1) | | | | | | | | | | | +--Clostridium sp. CAG:921 (1) | | | | | | | | | | | +--Clostridium argentinense CDC 2741 (1) | | | | | | | | | | | +--Clostridium acetireducens DSM 10703 (1) | | | | | | | | | | | +--Clostridium tepidiprofundi DSM 19306 (1) | | | | | | | | | | | +--Clostridium magnum DSM 2767 (2) | | | | | | | | | | | +--Clostridium grantii DSM 8605 (1) | | | | | | | | | | | +--Clostridium sp. CAG:221 (7) | | | | | | | | | | | +--Clostridium sp. CAG:557 (2) | | | | | | | | | +--Clostridium sp. ATCC 29733 (1) | | | | | | | | | +--Clostridium oryzae (2) | | | | | | | | | +--Clostridium sp. FS41 (1) | | | | | | | +--Eubacteriaceae (11) | | | | | | | | | +--Eubacterium (7) | | | | | | | | | | | +--Eubacterium sp. CAG:841 (1) | | | | | | | | | | | +--Eubacterium plexicaudatum ASF492 (5) | | | | | | | | | | | +--Eubacterium sp. CAG:161 (1) | | | | | | | | | +--Eubacterium sp. 3_1_31 (3) | | | | | | | | | +--Eubacterium sp. An11 (1) | | | | | | | +--Lachnospiraceae (21) | | | | | | | | | +--Dorea sp. 42_8 (1) | | | | | | | | | +--Blautia sp. An46 (1) | | | | | | | | | +--Blautia sp. YL58 (4) | | | | | | | | | +--Roseburia sp. 499 (1) | | | | | | | | | +--Lachnospiraceae bacterium M18-1 (2) | | | | | | | | | +--Anaerobium acetethylicum (1) | | | | | | | | | +--Roseburia sp. 831b (1) | | | | | | | | | +--Lachnoclostridium sp. An118 (1) | | | | | | | | | +--Lachnobacterium (1) | | | | | | | | | | | +--Lachnobacterium bovis DSM 14045 (1) | | | | | | | | | +--Hespellia (1) | | | | | | | | | | | +--Hespellia stercorisuis DSM 15480 (1) | | | | | | | | | +--Lachnospiraceae bacterium TWA4 (1) | | | | | | | | | +--Lachnoclostridium sp. YL32 (6) | | | | | | | +--Clostridialesincertaesedis (1) | | | | | | | | | +--ClostridialesFamilyXIII.IncertaeSedis (1) | | | | | | | | | +--Eubacterium nodatum ATCC 33099 (1) | | | | | | | +--unclassifiedClostridiales (40) | | | | | | | | | +--Clostridiales bacterium 41_21_two_genomes (1) | | | | | | | | | +--Epulopiscium sp. SCG-B10WGA-EpuloB (4) | | | | | | | | | +--Epulopiscium sp. SCG-C07WGA-EpuloA2 (2) | | | | | | | | | +--Flavonifractor (2) | | | | | | | | | | | +--Flavonifractor plautii ATCC 29863 (2) | | | | | | | | | +--Epulopiscium sp. Nele67-Bin004 (1) | | | | | | | | | +--Epulopiscium sp. AS2M-Bin002 (3) | | | | | | | | | +--Clostridiales bacterium 41_12_two_minus (1) | | | | | | | | | +--unclassifiedClostridiales(miscellaneous) (1) | | | | | | | | | | | +--Clostridiales bacterium oral taxon 876 str. F0540 (1) | | | | | | | | | +--Clostridiales bacterium 52_15 (3) | | | | | | | | | +--Epulopiscium sp. Nele67-Bin005 (1) | | | | | | | | | +--Epulopiscium sp. AS2M-Bin001 (14) | | | | | | | | | +--Epulopiscium sp. SCG-B11WGA-EpuloA1 (5) | | | | | | | | | +--Epulopiscium sp. Nuni2H_MBin001 (2) | | | | | | | +--Oscillospiraceae (3) | | | | | | | | | +--Oscillibacter sp. 1-3 (2) | | | | | | | | | +--Oscillibacter sp. KLE 1745 (1) | | | | | | | +--Peptococcaceae (14) | | | | | | | +--Dehalobacter sp. CF (1) | | | | | | | +--Desulfosporosinus sp. OL (7) | | | | | | | +--Desulfosporosinus sp. BRH_c37 (4) | | | | | | | +--Desulfitibacter sp. BRH_c19 (1) | | | | | | | +--Peptococcaceae bacterium BRH_c23 (1) | | | | | +--Bacilli (104) | | | | | | | +--Lactobacillales (24) | | | | | | | | | +--Streptococcaceae (1) | | | | | | | | | | | +--Streptococcus varani (1) | | | | | | | | | +--Carnobacteriaceae (2) | | | | | | | | | | | +--Carnobacterium (2) | | | | | | | | | | | +--Carnobacterium inhibens subsp. gilichinskyi (2) | | | | | | | | | +--Enterococcaceae (20) | | | | | | | | | | | +--Enterococcus sp. HSIEG1 (1) | | | | | | | | | | | +--Enterococcus sp. RIT-PI-f (2) | | | | | | | | | | | +--Enterococcus (13) | | | | | | | | | | | | | +--Enterococcus mundtii QU 25 (5) | | | | | | | | | | | | | +--Enterococcussaccharolyticus (1) | | | | | | | | | | | | | | | +--Enterococcus saccharolyticus subsp. saccharolyticus ATCC 43076 (1) | | | | | | | | | | | | | +--Enterococcus avium ATCC 14025 (1) | | | | | | | | | | | | | +--Enterococcus gilvus ATCC BAA-350 (1) | | | | | | | | | | | | | +--Enterococcus pallens ATCC BAA-351 (3) | | | | | | | | | | | | | +--Enterococcus phoeniculicola ATCC BAA-412 (1) | | | | | | | | | | | | | +--Enterococcus faecalis 13-SD-W-01 (1) | | | | | | | | | | | +--Enterococcus sp. 2G9_DIV0600 (4) | | | | | | | | | +--Aerococcaceae (1) | | | | | | | | | +--Globicatella sp. HMSC072A10 (1) | | | | | | | +--Bacillales (78) | | | | | | | | | +--Paenibacillaceae (14) | | | | | | | | | | | +--Paenibacillus sp. FSL A5-0031 (2) | | | | | | | | | | | +--Paenibacillus sp. Soil522 (2) | | | | | | | | | | | +--Paenibacillus (2) | | | | | | | | | | | | | +--Paenibacillus mucilaginosus 3016 (1) | | | | | | | | | | | | | +--Paenibacilluslarvae (1) | | | | | | | | | | | | | +--Paenibacillus larvae subsp. larvae DSM 25430 (1) | | | | | | | | | | | +--Paenibacillus bovis (1) | | | | | | | | | | | +--Paenibacillus sp. FSL H7-0331 (1) | | | | | | | | | | | +--Paenibacillus ferrarius (4) | | | | | | | | | | | +--Paenibacillus sp. Soil787 (2) | | | | | | | | | +--Planococcaceae (4) | | | | | | | | | | | +--Sporosarcina sp. P33 (3) | | | | | | | | | | | +--Kurthia sp. 11kri321 (1) | | | | | | | | | +--Bacillaceae (60) | | | | | | | | | +--Bacillus sp. SGD-V-76 (1) | | | | | | | | | +--Bacillus sp. MRMR6 (2) | | | | | | | | | +--Lentibacillus amyloliquefaciens (6) | | | | | | | | | +--Geobacillus sp. CAMR12739 (1) | | | | | | | | | +--Bacillus sp. FJAT-27916 (6) | | | | | | | | | +--Bacillus sp. FJAT-27997 (3) | | | | | | | | | +--Lysinibacillus contaminans (2) | | | | | | | | | +--Anaerobacillus sp. NB2006 (9) | | | | | | | | | +--Paraliobacillus sp. PM-2 (1) | | | | | | | | | +--Bacillus sp. MUM 13 (1) | | | | | | | | | +--Lysinibacillus (3) | | | | | | | | | | | +--Lysinibacillus sphaericus OT4b.31 (1) | | | | | | | | | | | +--Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 (2) | | | | | | | | | +--Bacillus (1) | | | | | | | | | | | +--Bacillus bataviensis LMG 21833 (1) | | | | | | | | | +--Bacillus weihaiensis (4) | | | | | | | | | +--Domibacillus antri (1) | | | | | | | | | +--Lysinibacillus sp. BF-4 (1) | | | | | | | | | +--Bacillus sp. SA1-12 (15) | | | | | | | | | +--Geobacillus sp. BCO2 (1) | | | | | | | | | +--Gracilibacillus (2) | | | | | | | | | +--Gracilibacillus boraciitolerans JCM 21714 (1) | | | | | | | | | +--Gracilibacillus halophilus YIM-C55.5 (1) | | | | | | | +--unclassifiedBacilli (2) | | | | | | | +--Bacilli bacterium VT-13-104 (2) | | | | | +--unclassifiedFirmicutessensustricto (2) | | | | | | | +--Firmicutes bacterium ASF500 (1) | | | | | | | +--Firmicutes bacterium M10-2 (1) | | | | | +--Tissierellia (9) | | | | | | | +--Tissierellales (7) | | | | | | | | | +--Tissierellaceae (6) | | | | | | | | | | | +--Tissierella (6) | | | | | | | | | | | +--Tissierella creatinophila DSM 6911 (3) | | | | | | | | | | | +--Tissierella praeacuta DSM 18095 (3) | | | | | | | | | +--Peptoniphilaceae (1) | | | | | | | | | +--Peptoniphilus grossensis (1) | | | | | | | +--unclassifiedTissierellia (2) | | | | | | | +--Tissierellia bacterium S5-A11 (2) | | | | | +--Erysipelotrichia (3) | | | | | +--Erysipelotrichales (3) | | | | | +--Erysipelotrichaceae (3) | | | | | +--Turicibacter sp. H121 (1) | | | | | +--Eggerthia (2) | | | | | +--Eggerthia catenaformis OT 569 = DSM 20559 (2) | | | +--Nitrospirae (1) | | | | | +--Nitrospira (1) | | | | | +--Nitrospira bacterium SG8_35_1 (1) | | | +--Firmicutes (192) | | | +--Clostridia (93) | | | | | +--butyrate-producing bacterium SS3/4 (1) | | | | | +--Clostridiales bacterium BV3C26 (1) | | | | | +--Clostridiales bacterium 1_7_47FAA (2) | | | | | +--Clostridiales (89) | | | | | +--Lachnospiraceae bacterium ACC2 (3) | | | | | +--Lachnospiraceae bacterium 9_1_43BFAA (1) | | | | | +--Eubacteriaceae (7) | | | | | | | +--Eubacterium angustum (1) | | | | | | | +--Eubacterium ventriosum ATCC 27560 (4) | | | | | | | +--Eubacterium uniforme (1) | | | | | | | +--Eubacterium siraeum 70/3 (1) | | | | | +--Lachnospiraceae (5) | | | | | | | +--Catonella morbi ATCC 51271 (1) | | | | | | | +--Lachnobacterium bovis (1) | | | | | | | +--Coprococcus catus GD/7 (1) | | | | | | | +--Butyrivibrio fibrisolvens 16/4 (1) | | | | | | | +--Johnsonella ignava ATCC 51276 (1) | | | | | +--Oscillospiraceae (1) | | | | | | | +--Oscillibacter valericigenes Sjm18-20 (1) | | | | | +--Ruminococcaceae (8) | | | | | | | +--Faecalibacterium prausnitzii A2-165 (2) | | | | | | | +--Ruminococcus sp. 18P13 (1) | | | | | | | +--Bacteroides cellulosolvens ATCC 35603 (1) | | | | | | | +--Acetivibrio ethanolgignens (1) | | | | | | | +--Ruminococcus torques L2-14 (1) | | | | | | | +--Subdoligranulum variabile DSM 15176 (2) | | | | | +--ClostridialesFamilyXI.IncertaeSedis (3) | | | | | | | +--Anaerococcus lactolyticus ATCC 51172 (1) | | | | | | | +--Peptoniphilus harei ACS-146-V-Sch2b (1) | | | | | | | +--Peptoniphilus asaccharolyticus DSM 20463 (1) | | | | | +--Lachnospiraceae bacterium A2 (4) | | | | | +--ClostridialesFamilyXIII.IncertaeSedis (3) | | | | | | | +--Mogibacterium sp. CM50 (3) | | | | | +--Clostridiaceae (30) | | | | | | | +--Clostridium aceticum (2) | | | | | | | +--Clostridium sp. ASF502 (2) | | | | | | | +--Clostridium formicaceticum (2) | | | | | | | +--Clostridium estertheticum subsp. estertheticum (1) | | | | | | | +--Clostridium kluyveri DSM 555 (1) | | | | | | | +--Clostridium butyricum E4 str. BoNT E BL5262 (1) | | | | | | | +--Clostridium sp. D5 (5) | | | | | | | +--Clostridium sp. DL-VIII (2) | | | | | | | +--Clostridium cellulolyticum H10 (2) | | | | | | | +--Clostridium puniceum (3) | | | | | | | +--Clostridium cellulovorans 743B (1) | | | | | | | +--Clostridium difficile (1) | | | | | | | +--Clostridium hathewayi WAL-18680 (1) | | | | | | | +--Clostridium sp. DMHC 10 (1) | | | | | | | +--Clostridium roseum (1) | | | | | | | +--Clostridium symbiosum WAL-14163 (1) | | | | | | | +--Clostridium neopropionicum (3) | | | | | +--Christensenellaceae (1) | | | | | | | +--Christensenella minuta (1) | | | | | +--Lachnospiraceae bacterium 3-1 (2) | | | | | +--Pseudoflavonifractor capillosus ATCC 29799 (8) | | | | | +--Peptococcaceae (6) | | | | | | | +--Desulfitobacterium (2) | | | | | | | | | +--Desulfitobacterium sp. enrichment culture clone CEB3 (2) | | | | | | | +--Desulfotomaculum gibsoniae DSM 7213 (1) | | | | | | | +--Desulfosporosinus acidiphilus SJ4 (1) | | | | | | | +--Desulfosporosinus sp. OT (2) | | | | | +--Catabacteriaceae (1) | | | | | | | +--Catabacter hongkongensis (1) | | | | | +--Lachnospiraceae bacterium 28-4 (2) | | | | | +--Lachnospiraceae bacterium A4 (4) | | | +--Negativicutes (3) | | | | | +--Selenomonadales (3) | | | | | +--Acidaminococcaceae (1) | | | | | | | +--Phascolarctobacterium sp. YIT 12067 (1) | | | | | +--Veillonellaceae (2) | | | | | +--Sporomusa malonica (1) | | | | | +--Sporomusa sp. An4 (1) | | | +--Lactobacillales (9) | | | | | +--Streptococcaceae (1) | | | | | | | +--Streptococcus equi subsp. zooepidemicus (1) | | | | | +--Enterococcaceae (7) | | | | | | | +--Enterococcus italicus DSM 15952 (1) | | | | | | | +--Pilibacter termitis (1) | | | | | | | +--Enterococcus faecalis V583 (2) | | | | | | | +--Enterococcus termitis (1) | | | | | | | +--Enterococcus faecium DO (2) | | | | | +--Lactobacillaceae (1) | | | | | +--Lactobacillus backi (1) | | | +--Bacillales (82) | | | | | +--Planococcaceae (6) | | | | | | | +--Sporosarcina psychrophila (4) | | | | | | | +--Jeotgalibacillus campisalis (1) | | | | | | | +--Caryophanon tenue (1) | | | | | +--Paenibacillaceae (6) | | | | | | | +--Paenibacillus polymyxa SC2 (1) | | | | | | | +--Brevibacillus sp. WF146 (1) | | | | | | | +--Paenibacillus sp. HGF7 (1) | | | | | | | +--Paenibacillus pectinilyticus (1) | | | | | | | +--Paenibacillus riograndensis SBR5 (2) | | | | | +--Bacillaceae (69) | | | | | | | +--Bacillus megaterium QM B1551 (1) | | | | | | | +--Bacillus schlegelii (3) | | | | | | | +--Geobacillus kaustophilus HTA426 (1) | | | | | | | +--Bacillus sp. BL4-6 (2) | | | | | | | +--Bacillus krulwichiae (1) | | | | | | | +--Lysinibacillus xylanilyticus (1) | | | | | | | +--Bacillus cellulosilyticus DSM 2522 (1) | | | | | | | +--Bacillus okhensis (3) | | | | | | | +--Bacillus arseniciselenatis (2) | | | | | | | +--Geobacillus sp. WCH70 (1) | | | | | | | +--Bacillus coagulans 36D1 (1) | | | | | | | +--Halobacillus halophilus DSM 2266 (5) | | | | | | | +--Bacillus galactosidilyticus (1) | | | | | | | +--Bacillus circulans (6) | | | | | | | +--Bacillus badius (1) | | | | | | | +--Bacillus pseudofirmus OF4 (4) | | | | | | | +--Bacillus sp. 1NLA3E (7) | | | | | | | +--Halobacillus karajensis (13) | | | | | | | +--Bacillus macroides (2) | | | | | | | +--Bacillus (2) | | | | | | | | | +--Bacillus cereus Rock4-18 (1) | | | | | | | | | +--Bacillus anthracis (1) | | | | | | | +--Anoxybacillus amylolyticus (1) | | | | | | | +--Bacillus sp. 2_A_57_CT2 (3) | | | | | | | +--Oceanobacillus oncorhynchi (1) | | | | | | | +--Virgibacillus necropolis (2) | | | | | | | +--Anaerobacillus alkalilacustre (3) | | | | | | | +--Bacillus endophyticus (1) | | | | | +--Thermoactinomycetaceae (1) | | | | | +--Seinonella peptonophila (1) | | | +--Erysipelotrichi (5) | | | +--Erysipelotrichales (5) | | | +--Erysipelotrichaceae (1) | | | | | +--Turicibacter sanguinis PC909 (1) | | | +--Eubacterium biforme DSM 3989 (2) | | | +--Erysipelotrichaceae bacterium 3_1_53 (1) | | | +--Eubacterium cylindroides T2-87 (1) | +--Viruses (1) | +--dsDNAviruses,noRNAstage (1) | +--Caudovirales (1) | +--Myoviridae (1) | +--Bacillus phage AR9 (1)