# Species tree for RF02001 # Generated from Rfam version 14.10 | +--methanotrophic endosymbiont of Bathymodiolus azoricus (Menez Gwen) (2) | +--Eukaryota (38) | | | +--Metazoa (33) | | | | | +--Nematoda (4) | | | | | | | +--Chromadorea (3) | | | | | | | | | +--Rhabditida (3) | | | | | | | | | +--Strongylida (2) | | | | | | | | | | | +--Trichostrongyloidea (1) | | | | | | | | | | | | | +--Haemonchidae (1) | | | | | | | | | | | | | +--Haemonchinae (1) | | | | | | | | | | | | | +--Haemonchus contortus (1) | | | | | | | | | | | +--Ancylostomatoidea (1) | | | | | | | | | | | +--Ancylostomatidae (1) | | | | | | | | | | | +--Bunostominae (1) | | | | | | | | | | | +--Necator americanus (1) | | | | | | | | | +--Rhabditoidea (1) | | | | | | | | | +--Rhabditidae (1) | | | | | | | | | +--Peloderinae (1) | | | | | | | | | +--Caenorhabditis briggsae (1) | | | | | | | +--Enoplea (1) | | | | | | | +--Trichocephalida (1) | | | | | | | +--Trichuridae (1) | | | | | | | +--Trichuris trichiura (1) | | | | | +--Chordata (9) | | | | | | | +--Tunicata (1) | | | | | | | | | +--Ascidiacea (1) | | | | | | | | | +--Enterogona (1) | | | | | | | | | +--Phlebobranchia (1) | | | | | | | | | +--Cionidae (1) | | | | | | | | | +--Ciona savignyi (1) | | | | | | | +--Craniata (8) | | | | | | | +--Vertebrata (8) | | | | | | | +--Euteleostomi (8) | | | | | | | +--Actinopterygii (1) | | | | | | | | | +--Neopterygii (1) | | | | | | | | | +--Teleostei (1) | | | | | | | | | +--Ostariophysi (1) | | | | | | | | | +--Cypriniformes (1) | | | | | | | | | +--Cyprinidae (1) | | | | | | | | | +--Danio rerio (zebrafish) (1) | | | | | | | +--Mammalia (2) | | | | | | | | | +--Eutheria (2) | | | | | | | | | +--Euarchontoglires (2) | | | | | | | | | +--Primates (2) | | | | | | | | | +--Haplorrhini (2) | | | | | | | | | +--Catarrhini (2) | | | | | | | | | +--Hominidae (2) | | | | | | | | | +--Pan troglodytes (chimpanzee) (2) | | | | | | | +--Archosauria (5) | | | | | | | +--Dinosauria (4) | | | | | | | | | +--Saurischia (4) | | | | | | | | | +--Theropoda (4) | | | | | | | | | +--Coelurosauria (4) | | | | | | | | | +--Aves (4) | | | | | | | | | +--Neognathae (4) | | | | | | | | | +--Passeriformes (1) | | | | | | | | | | | +--Acanthisittidae (1) | | | | | | | | | | | +--Acanthisitta chloris (1) | | | | | | | | | +--Sphenisciformes (1) | | | | | | | | | | | +--Spheniscidae (1) | | | | | | | | | | | +--Pygoscelis adeliae (Adelie penguin) (1) | | | | | | | | | +--Ciconiiformes (1) | | | | | | | | | | | +--Threskiornithidae (1) | | | | | | | | | | | +--Nipponia nippon (crested ibis) (1) | | | | | | | | | +--Procellariiformes (1) | | | | | | | | | +--Procellariidae (1) | | | | | | | | | +--Procellariinae (1) | | | | | | | | | +--Fulmarus glacialis (northern fulmar) (1) | | | | | | | +--Crocodylidae (1) | | | | | | | +--Alligatorinae (1) | | | | | | | +--Alligator mississippiensis (American alligator) (1) | | | | | +--Arthropoda (20) | | | | | +--Hexapoda (18) | | | | | | | +--Insecta (18) | | | | | | | +--Pterygota (18) | | | | | | | +--Neoptera (18) | | | | | | | +--Endopterygota (11) | | | | | | | | | +--Diptera (11) | | | | | | | | | +--Nematocera (10) | | | | | | | | | | | +--Culicoidea (10) | | | | | | | | | | | +--Culicidae (10) | | | | | | | | | | | +--Culicinae (10) | | | | | | | | | | | +--Aedini (10) | | | | | | | | | | | +--Aedes (10) | | | | | | | | | | | +--Aedes aegypti (yellow fever mosquito) (5) | | | | | | | | | | | +--Aedes albopictus (Asian tiger mosquito) (5) | | | | | | | | | +--Brachycera (1) | | | | | | | | | +--Muscomorpha (1) | | | | | | | | | +--Hippoboscoidea (1) | | | | | | | | | +--Glossinidae (1) | | | | | | | | | +--Glossina pallidipes (1) | | | | | | | +--Paraneoptera (7) | | | | | | | +--Hemiptera (7) | | | | | | | +--Euhemiptera (7) | | | | | | | +--Heteroptera (7) | | | | | | | +--Panheteroptera (7) | | | | | | | +--Cimicomorpha (7) | | | | | | | +--Reduviidae (7) | | | | | | | +--Triatominae (7) | | | | | | | +--Rhodnius prolixus (7) | | | | | +--Crustacea (1) | | | | | | | +--Branchiopoda (1) | | | | | | | +--Diplostraca (1) | | | | | | | +--Cladocera (1) | | | | | | | +--Anomopoda (1) | | | | | | | +--Daphniidae (1) | | | | | | | +--Daphnia pulex (1) | | | | | +--Chelicerata (1) | | | | | +--Arachnida (1) | | | | | +--Acari (1) | | | | | +--Parasitiformes (1) | | | | | +--Ixodida (1) | | | | | +--Ixodoidea (1) | | | | | +--Ixodidae (1) | | | | | +--Ixodinae (1) | | | | | +--Ixodes scapularis (black-legged tick) (1) | | | +--Fungi (1) | | | | | +--Chytridiomycota (1) | | | | | +--Chytridiomycetes (1) | | | | | +--Chytridiales (1) | | | | | +--Chytridialesincertaesedis (1) | | | | | +--Batrachochytrium dendrobatidis JAM81 (1) | | | +--Rhizaria (2) | | | | | +--Foraminifera (2) | | | | | +--Reticulomyxidae (2) | | | | | +--Reticulomyxa filosa (2) | | | +--Viridiplantae (2) | | | +--Streptophyta (2) | | | +--Embryophyta (2) | | | +--Tracheophyta (2) | | | +--Spermatophyta (2) | | | +--Magnoliophyta (1) | | | | | +--Liliopsida (1) | | | | | +--Poales (1) | | | | | +--Poaceae (1) | | | | | +--BEPclade (1) | | | | | +--Pooideae (1) | | | | | +--Triticeae (1) | | | | | +--Triticum urartu (1) | | | +--Coniferopsida (1) | | | +--Coniferales (1) | | | +--Pinaceae (1) | | | +--Picea glauca (white spruce) (1) | +--unclassifiedsequences (158) | | | +--metagenome sequence (31) | | | +--metagenomes (127) | | | +--epibiont metagenome (2) | | | +--freshwater sediment metagenome (18) | | | +--mouse gut metagenome (2) | | | +--microbial mat metagenome (11) | | | +--human gut metagenome (50) | | | +--termite gut metagenome (14) | | | +--marine metagenome (30) | +--Bacteria (3465) | | | +--candidatedivisionNC10 (2) | | | | | +--NC10 bacterium 'Dutch sediment' (2) | | | +--Bacteroidetes bacterium 3B-2 (1) | | | +--Bacteroidetes (195) | | | | | +--Sphingobacteriia (13) | | | | | | | +--Sphingobacteriales (13) | | | | | | | +--Sphingobacteriaceae (5) | | | | | | | | | +--Sphingobacterium sp. 21 (1) | | | | | | | | | +--Parapedobacter sp. 4M29 (1) | | | | | | | | | +--Pedobacter nyackensis (1) | | | | | | | | | +--Mucilaginibacter paludis DSM 18603 (2) | | | | | | | +--Chitinophagaceae (8) | | | | | | | +--Filimonas lacunae (1) | | | | | | | +--Chitinophaga sancti (6) | | | | | | | +--Niastella yeongjuensis (1) | | | | | +--Bacteroidia (91) | | | | | | | +--Bacteroidales (91) | | | | | | | +--Porphyromonadaceae (8) | | | | | | | | | +--Porphyromonas asaccharolytica DSM 20707 (7) | | | | | | | | | +--Proteiniphilum acetatigenes (1) | | | | | | | +--Bacteroidaceae (48) | | | | | | | | | +--Bacteroides fluxus YIT 12057 (1) | | | | | | | | | +--Bacteroides sp. 9_1_42FAA (1) | | | | | | | | | +--Bacteroides dorei DSM 17855 (1) | | | | | | | | | +--Bacteroides sp. 1_1_6 (1) | | | | | | | | | +--Bacteroides helcogenes P 36-108 (1) | | | | | | | | | +--Bacteroides thetaiotaomicron VPI-5482 (4) | | | | | | | | | +--Bacteroides coprophilus DSM 18228 (1) | | | | | | | | | +--Bacteroides salanitronis DSM 18170 (3) | | | | | | | | | +--Bacteroides coprocola DSM 17136 (35) | | | | | | | +--Prevotellaceae (35) | | | | | | | +--Prevotella multiformis DSM 16608 (1) | | | | | | | +--Prevotella copri (3) | | | | | | | +--Prevotella corporis (2) | | | | | | | +--Prevotella copri DSM 18205 (3) | | | | | | | +--Prevotella multisaccharivorax DSM 17128 (18) | | | | | | | +--Prevotella disiens FB035-09AN (1) | | | | | | | +--Prevotella bergensis DSM 17361 (2) | | | | | | | +--Prevotella timonensis CRIS 5C-B1 (5) | | | | | +--Flavobacteriia (58) | | | | | | | +--Flavobacteriales (58) | | | | | | | +--Flavobacteriaceae (58) | | | | | | | +--Zobellia galactanivorans (4) | | | | | | | +--Flavobacterium sp. K1 (2) | | | | | | | +--Flavobacterium johnsoniae UW101 (2) | | | | | | | +--Krokinobacter sp. 4H-3-7-5 (5) | | | | | | | +--Flavobacterium frigoris (1) | | | | | | | +--Zunongwangia profunda SM-A87 (1) | | | | | | | +--Flavobacterium granuli (1) | | | | | | | +--Flavobacterium segetis (3) | | | | | | | +--Flavobacterium branchiophilum (4) | | | | | | | +--Gillisia sp. ck-I2-15 (1) | | | | | | | +--Cellulophaga algicola DSM 14237 (10) | | | | | | | +--Arenibacter sp. NH36A (5) | | | | | | | +--Flavobacterium fryxellicola (3) | | | | | | | +--Salegentibacter sp. HD4 (3) | | | | | | | +--Tenacibaculum sp. 35/09 (10) | | | | | | | +--Psychroflexus torquis ATCC 700755 (3) | | | | | +--Cytophagia (33) | | | | | +--Cytophagales (33) | | | | | +--Cyclobacteriaceae (4) | | | | | | | +--Cyclobacterium marinum DSM 745 (1) | | | | | | | +--Cyclobacterium lianum (1) | | | | | | | +--Belliella pelovolcani (2) | | | | | +--Cytophagaceae (21) | | | | | | | +--Leadbetterella byssophila DSM 17132 (19) | | | | | | | +--Microscilla sp. PRE1 (1) | | | | | | | +--Pontibacter korlensis (1) | | | | | +--Cytophagaceae bacterium ANESC-S (6) | | | | | +--Flammeovirgaceae (2) | | | | | +--Marivirga tractuosa DSM 4126 (2) | | | +--Thermotogae (35) | | | | | +--Thermotogales bacterium MesG1.Ag.4.2 (6) | | | | | +--Thermotogales (29) | | | | | +--Thermotogaceae (29) | | | | | +--Thermotogaceae bacterium SulfLac1 (2) | | | | | +--Petrotoga mobilis SJ95 (7) | | | | | +--Kosmotoga olearia TBF 19.5.1 (20) | | | +--Acidobacteria (15) | | | | | +--unclassifiedAcidobacteria (9) | | | | | | | +--Acidobacteria bacterium RBG_16_64_8 (1) | | | | | | | +--Acidobacteria bacterium 13_2_20CM_2_57_6 (1) | | | | | | | +--Acidobacteria bacterium RIFCSPLOWO2_02_FULL_67_21 (1) | | | | | | | +--Acidobacteria bacterium 13_1_20CM_58_21 (1) | | | | | | | +--Acidobacteria bacterium 13_2_20CM_56_17 (2) | | | | | | | +--Acidobacteria bacterium RIFCSPLOWO2_12_FULL_66_10 (1) | | | | | | | +--Acidobacteria bacterium RIFCSPLOWO2_02_FULL_65_29 (1) | | | | | | | +--Acidobacteria bacterium 13_1_40CM_4_69_4 (1) | | | | | +--Acidobacteriia (1) | | | | | | | +--Acidobacteriales (1) | | | | | | | +--Acidobacteriales bacterium 13_2_20CM_55_8 (1) | | | | | +--Solibacteres (3) | | | | | | | +--Solibacterales (3) | | | | | | | +--Solibacteraceae (3) | | | | | | | +--Candidatus Solibacter usitatus Ellin6076 (3) | | | | | +--Acidobacteriales (2) | | | | | +--Acidobacteriaceae (2) | | | | | +--Acidobacterium capsulatum ATCC 51196 (2) | | | +--Fusobacteria (1) | | | | | +--Fusobacteriales (1) | | | | | +--Fusobacteriaceae (1) | | | | | +--[Leptotrichia] amnionii (1) | | | +--Elusimicrobia (2) | | | | | +--Elusimicrobia bacterium RIFOXYD12_FULL_66_9 (1) | | | | | +--Elusimicrobia bacterium CG1_02_63_36 (1) | | | +--PVCgroup (46) | | | | | +--Chlamydiae (1) | | | | | | | +--Chlamydiae bacterium RIFCSPHIGHO2_01_FULL_44_39 (1) | | | | | +--Kiritimatiellaeota (1) | | | | | | | +--Kiritimatiellae (1) | | | | | | | +--Kiritimatiellales (1) | | | | | | | +--Kiritimatiellaceae (1) | | | | | | | +--Kiritimatiella glycovorans (1) | | | | | +--Planctomycetes (30) | | | | | | | +--Planctomycetes bacterium SM23_25 (1) | | | | | | | +--Planctomycetes bacterium SCN 63-9 (1) | | | | | | | +--Phycisphaerae (2) | | | | | | | | | +--Phycisphaerae bacterium SM23_30 (1) | | | | | | | | | +--Phycisphaerae bacterium ST-NAGAB-D1 (1) | | | | | | | +--Planctomycetia (26) | | | | | | | +--CandidatusBrocadiales (1) | | | | | | | | | +--CandidatusBrocadiaceae (1) | | | | | | | | | +--Candidatus Scalindua rubra (1) | | | | | | | +--Planctomycetales (25) | | | | | | | +--Gemmataceae (1) | | | | | | | | | +--Fimbriiglobus ruber (1) | | | | | | | +--Isosphaeraceae (3) | | | | | | | | | +--Singulisphaera (3) | | | | | | | | | +--Singulisphaera acidiphila DSM 18658 (3) | | | | | | | +--Planctomycetaceae (21) | | | | | | | +--Rhodopirellula (3) | | | | | | | | | +--Rhodopirellula maiorica SM1 (3) | | | | | | | +--Fuerstia marisgermanicae (5) | | | | | | | +--Pirellula sp. SH-Sr6A (13) | | | | | +--CandidatusOmnitrophica (3) | | | | | | | +--Candidatus Omnitrophica bacterium CG1_02_40_15 (3) | | | | | +--Verrucomicrobia (3) | | | | | | | +--Opitutae (3) | | | | | | | +--Opitutales (3) | | | | | | | +--Opitutaceae (3) | | | | | | | +--Opitutaceae bacterium TSB47 (3) | | | | | +--Lentisphaerae (8) | | | | | +--unclassifiedLentisphaerae (8) | | | | | +--Lentisphaerae bacterium RIFOXYB12_FULL_65_16 (2) | | | | | +--Lentisphaerae bacterium GWF2_38_69 (1) | | | | | +--Lentisphaerae bacterium RIFOXYA12_FULL_48_11 (2) | | | | | +--Lentisphaerae bacterium RIFOXYC12_FULL_60_16 (1) | | | | | +--Lentisphaerae bacterium GWF2_57_35 (2) | | | +--Haloplasmatales (3) | | | | | +--Haloplasmataceae (3) | | | | | +--Haloplasma contractile SSD-17B (3) | | | +--Nitrospirae (10) | | | | | +--Nitrospirae bacterium GWC2_57_13 (1) | | | | | +--Nitrospirae bacterium HCH-1 (2) | | | | | +--Nitrospirae bacterium RIFCSPHIGHO2_02_FULL_42_12 (1) | | | | | +--Nitrospira (2) | | | | | | | +--Nitrospirales (2) | | | | | | | +--Nitrospiraceae (2) | | | | | | | +--Thermodesulfovibrio sp. RBG_19FT_COMBO_42_12 (1) | | | | | | | +--Leptospirillum (1) | | | | | | | +--Leptospirillum sp. Group IV 'UBA BS' (1) | | | | | +--Nitrospirae bacterium GWC2_56_14 (2) | | | | | +--Nitrospirae bacterium RBG_13_39_12 (1) | | | | | +--Nitrospirae bacterium RBG_19FT_COMBO_55_12 (1) | | | +--Actinobacteria (5) | | | | | +--Coriobacteridae (1) | | | | | | | +--Coriobacteriales (1) | | | | | | | +--Coriobacterineae (1) | | | | | | | +--Coriobacteriaceae bacterium BV3Ac1 (1) | | | | | +--Actinobacteridae (4) | | | | | +--Actinomycetales (4) | | | | | +--Corynebacterineae (1) | | | | | | | +--Mycobacteriaceae (1) | | | | | | | +--Mycobacterium intermedium (1) | | | | | +--Streptosporangineae (1) | | | | | | | +--Streptosporangiaceae (1) | | | | | | | +--Microbispora rosea (1) | | | | | +--Frankineae (2) | | | | | +--Frankiaceae (2) | | | | | +--Frankia sp. CcI3 (2) | | | +--Proteobacteria (1088) | | | | | +--Alphaproteobacteria (60) | | | | | | | +--Rhizobiales bacterium WSM3557 (1) | | | | | | | +--Rhizobiales (50) | | | | | | | | | +--Brucellaceae (5) | | | | | | | | | | | +--Ochrobactrum anthropi ATCC 49188 (5) | | | | | | | | | +--Methylocystaceae (1) | | | | | | | | | | | +--Methylosinus sp. R-45379 (1) | | | | | | | | | +--Rhizobiaceae (22) | | | | | | | | | | | +--Shinella sp. DD12 (1) | | | | | | | | | | | +--Rhizobium/Agrobacteriumgroup (13) | | | | | | | | | | | | | +--Rhizobium etli CIAT 894 (1) | | | | | | | | | | | | | +--Rhizobium (1) | | | | | | | | | | | | | | | +--Rhizobium mesoamericanum STM3625 (1) | | | | | | | | | | | | | +--Rhizobium sp. R72 (2) | | | | | | | | | | | | | +--Rhizobium yanglingense (7) | | | | | | | | | | | | | +--Rhizobium sp. Pop5 (1) | | | | | | | | | | | | | +--Rhizobium sp. YS-1r (1) | | | | | | | | | | | +--Sinorhizobium/Ensifergroup (8) | | | | | | | | | | | +--Sinorhizobium saheli (1) | | | | | | | | | | | +--Ensifer sp. LCM 4579 (2) | | | | | | | | | | | +--Sinorhizobium meliloti 1021 (1) | | | | | | | | | | | +--Sinorhizobium fredii NGR234 (3) | | | | | | | | | | | +--Sinorhizobium meliloti (1) | | | | | | | | | +--Methylobacteriaceae (1) | | | | | | | | | | | +--Methylobacterium tarhaniae (1) | | | | | | | | | +--Phyllobacteriaceae (4) | | | | | | | | | | | +--Mesorhizobium sp. L48C026A00 (2) | | | | | | | | | | | +--Mesorhizobium (1) | | | | | | | | | | | | | +--Mesorhizobium metallidurans STM 2683 (1) | | | | | | | | | | | +--Mesorhizobium sp. LSHC420B00 (1) | | | | | | | | | +--Bradyrhizobiaceae (17) | | | | | | | | | +--Bradyrhizobium sp. BR 10245 (1) | | | | | | | | | +--Bradyrhizobium japonicum USDA 110 (2) | | | | | | | | | +--Bradyrhizobium sp. BTAi1 (2) | | | | | | | | | +--Bradyrhizobium erythrophlei (4) | | | | | | | | | +--Bradyrhizobium sp. BR3351 (2) | | | | | | | | | +--Bradyrhizobium lablabi (1) | | | | | | | | | +--Bradyrhizobium sp. NAS80.1 (3) | | | | | | | | | +--Bradyrhizobium sp. AS23.2 (2) | | | | | | | +--Rhodospirillales (2) | | | | | | | | | +--Rhodospirillaceae (2) | | | | | | | | | +--Azospirillum amazonense Y2 (1) | | | | | | | | | +--Skermanella (1) | | | | | | | | | +--Skermanella stibiiresistens SB22 (1) | | | | | | | +--Sphingomonadales (7) | | | | | | | +--Sphingomonadaceae (7) | | | | | | | +--Novosphingobium sp. AP12 (1) | | | | | | | +--Sphingopyxis sp. BZ30 (2) | | | | | | | +--Sphingobium sp. TCM1 (1) | | | | | | | +--Novosphingobium pentaromativorans US6-1 (1) | | | | | | | +--Sphingobium (1) | | | | | | | | | +--Sphingobium quisquiliarum P25 (1) | | | | | | | +--Sphingomonas (1) | | | | | | | +--Sphingomonas sanxanigenens DSM 19645 = NX02 (1) | | | | | +--delta proteobacterium MLMS-1 (2) | | | | | +--Deltaproteobacteria (100) | | | | | | | +--Desulfovibrionales (9) | | | | | | | | | +--Desulfohalobiaceae (9) | | | | | | | | | +--Desulfohalobium retbaense DSM 5692 (9) | | | | | | | +--Myxococcales (9) | | | | | | | | | +--Nannocystineae (7) | | | | | | | | | | | +--Nannocystaceae (7) | | | | | | | | | | | +--Plesiocystis pacifica SIR-1 (7) | | | | | | | | | +--Cystobacterineae (2) | | | | | | | | | +--Cystobacteraceae (2) | | | | | | | | | +--Archangium gephyra (2) | | | | | | | +--Desulfuromonadales (40) | | | | | | | | | +--Pelobacteraceae (7) | | | | | | | | | | | +--Pelobacter carbinolicus DSM 2380 (6) | | | | | | | | | | | +--Pelobacter propionicus DSM 2379 (1) | | | | | | | | | +--Geobacteraceae (33) | | | | | | | | | +--Geobacter uraniireducens Rf4 (11) | | | | | | | | | +--Geobacter sp. FRC-32 (3) | | | | | | | | | +--Geobacter sulfurreducens PCA (3) | | | | | | | | | +--Geobacter sp. M18 (16) | | | | | | | +--Desulfobacterales (37) | | | | | | | | | +--Desulfobulbaceae (5) | | | | | | | | | | | +--Desulfotalea psychrophila LSv54 (4) | | | | | | | | | | | +--Desulfurivibrio alkaliphilus AHT2 (1) | | | | | | | | | +--Desulfobacteraceae (32) | | | | | | | | | +--Desulfobacula toluolica Tol2 (29) | | | | | | | | | +--Desulfobacter postgatei 2ac9 (2) | | | | | | | | | +--Desulfobacterium autotrophicum HRM2 (1) | | | | | | | +--Syntrophobacterales (5) | | | | | | | +--Syntrophobacteraceae (3) | | | | | | | | | +--Syntrophobacter fumaroxidans MPOB (3) | | | | | | | +--Syntrophaceae (2) | | | | | | | +--Syntrophus aciditrophicus SB (2) | | | | | +--gamma proteobacterium HdN1 (10) | | | | | +--delta/epsilonsubdivisions (107) | | | | | | | +--Deltaproteobacteria (107) | | | | | | | +--Myxococcales (4) | | | | | | | | | +--Sorangiineae (2) | | | | | | | | | | | +--Polyangiaceae (2) | | | | | | | | | | | +--Chondromyces (1) | | | | | | | | | | | | | +--Chondromyces apiculatus DSM 436 (1) | | | | | | | | | | | +--Sorangium (1) | | | | | | | | | | | +--Sorangium cellulosum So0157-2 (1) | | | | | | | | | +--Cystobacterineae (2) | | | | | | | | | +--Anaeromyxobacteraceae (1) | | | | | | | | | | | +--Anaeromyxobacter sp. RBG_16_69_14 (1) | | | | | | | | | +--Vulgatibacteraceae (1) | | | | | | | | | +--Vulgatibacter incomptus (1) | | | | | | | +--Desulfovibrionales (7) | | | | | | | | | +--Desulfovibrionaceae (7) | | | | | | | | | +--Desulfovibrio sp. S3730MH75 (1) | | | | | | | | | +--Desulfovibrio sp. An276 (6) | | | | | | | +--Desulfuromonadales (22) | | | | | | | | | +--Desulfuromonadales bacterium C00003107 (1) | | | | | | | | | +--Desulfuromonadaceae (16) | | | | | | | | | | | +--Malonomonas (1) | | | | | | | | | | | | | +--Malonomonas rubra DSM 5091 (1) | | | | | | | | | | | +--Desulfuromonas sp. DDH964 (15) | | | | | | | | | +--Geobacteraceae (3) | | | | | | | | | | | +--Geobacteraceae bacterium GWC2_58_44 (2) | | | | | | | | | | | +--Geobacteraceae bacterium GWC2_53_11 (1) | | | | | | | | | +--Desulfuromonadales bacterium C00003096 (2) | | | | | | | +--Desulfobacterales (38) | | | | | | | | | +--Desulfobacterales bacterium GWB2_56_26 (1) | | | | | | | | | +--Desulfobacterales bacterium C00003106 (2) | | | | | | | | | +--Desulfobacterales bacterium S5133MH4 (2) | | | | | | | | | +--Desulfobacterales bacterium PC51MH44 (3) | | | | | | | | | +--Desulfobacteraceae (8) | | | | | | | | | | | +--Desulfotignum (1) | | | | | | | | | | | | | +--Desulfotignum phosphitoxidans DSM 13687 (1) | | | | | | | | | | | +--Desulfococcus (1) | | | | | | | | | | | | | +--Desulfococcus multivorans DSM 2059 (1) | | | | | | | | | | | +--Desulfobacterium (5) | | | | | | | | | | | | | +--Desulfobacterium vacuolatum DSM 3385 (5) | | | | | | | | | | | +--Desulfobacteraceae bacterium 4572_88 (1) | | | | | | | | | +--Desulfobacterales bacterium S5133MH16 (1) | | | | | | | | | +--Desulfobulbaceae (18) | | | | | | | | | | | +--Desulfobulbaceae bacterium BRH_c16a (2) | | | | | | | | | | | +--Desulfofustis (4) | | | | | | | | | | | | | +--uncultured Desulfofustis sp. PB-SRB1 (2) | | | | | | | | | | | | | +--Desulfofustis glycolicus DSM 9705 (2) | | | | | | | | | | | +--Desulfobulbus sp. Tol-SR (2) | | | | | | | | | | | +--Desulfobulbaceae bacterium DB1 (1) | | | | | | | | | | | +--Desulfopila (5) | | | | | | | | | | | | | +--Desulfopila aestuarii DSM 18488 (5) | | | | | | | | | | | +--Desulfobulbaceae bacterium S3730MH12 (1) | | | | | | | | | | | +--Desulfocapsa (3) | | | | | | | | | | | +--Desulfocapsa sulfexigens DSM 10523 (3) | | | | | | | | | +--Desulfobacterales bacterium C00003060 (1) | | | | | | | | | +--Desulfobacterales bacterium C00003104 (2) | | | | | | | +--Syntrophobacterales (14) | | | | | | | | | +--Syntrophobacteraceae (1) | | | | | | | | | | | +--Syntrophobacteraceae bacterium CG2_30_61_12 (1) | | | | | | | | | +--Syntrophobacterales bacterium GWC2_56_13 (2) | | | | | | | | | +--Syntrophobacterales bacterium RIFOXYC2_FULL_60_23 (2) | | | | | | | | | +--Syntrophaceae (9) | | | | | | | | | +--Smithella sp. F21 (1) | | | | | | | | | +--Smithella sp. SDB (1) | | | | | | | | | +--Smithella sp. SCADC (5) | | | | | | | | | +--Syntrophus sp. GWC2_56_31 (1) | | | | | | | | | +--Syntrophaceae bacterium CG2_30_58_14 (1) | | | | | | | +--unclassifiedDeltaproteobacteria (22) | | | | | | | +--Deltaproteobacteria bacterium RIFCSPLOWO2_02_FULL_53_8 (1) | | | | | | | +--Deltaproteobacteria bacterium RIFOXYA12_FULL_58_15 (1) | | | | | | | +--Deltaproteobacteria bacterium RBG_16_48_10 (1) | | | | | | | +--Deltaproteobacteria bacterium GWC2_65_14 (1) | | | | | | | +--Deltaproteobacteria bacterium RIFOXYD12_FULL_56_24 (1) | | | | | | | +--Deltaproteobacteria bacterium RBG_13_58_19 (1) | | | | | | | +--Deltaproteobacteria bacterium RIFCSPLOWO2_12_FULL_60_19 (1) | | | | | | | +--Dissulfuribacter thermophilus (2) | | | | | | | +--delta proteobacterium ML8_D (3) | | | | | | | +--Deltaproteobacteria bacterium RIFOXYD12_FULL_55_16 (1) | | | | | | | +--Deltaproteobacteria bacterium CG2_30_66_27 (1) | | | | | | | +--Deltaproteobacteria bacterium RIFOXYD2_FULL_66_9 (1) | | | | | | | +--Deltaproteobacteria bacterium RIFOXYD12_FULL_50_9 (3) | | | | | | | +--Deltaproteobacteria bacterium RBG_13_49_15 (1) | | | | | | | +--Deltaproteobacteria bacterium RBG_16_47_11 (1) | | | | | | | +--Deltaproteobacteria bacterium RBG_16_49_23 (1) | | | | | | | +--Deltaproteobacteria bacterium RBG_13_65_10 (1) | | | | | +--Gammaproteobacteria (461) | | | | | | | +--unclassifiedGammaproteobacteria (7) | | | | | | | | | +--sulfur-oxidizingsymbionts (2) | | | | | | | | | | | +--Candidatus Thiodiazotropha endolucinida (2) | | | | | | | | | +--Gammaproteobacteria bacterium GWE2_42_36 (1) | | | | | | | | | +--Gammaproteobacteria bacterium RIFCSPHIGHO2_12_FULL_42_10 (2) | | | | | | | | | +--Gammaproteobacteria bacterium GWF2_41_13 (1) | | | | | | | | | +--Gammaproteobacteria bacterium RIFCSPLOWO2_02_FULL_61_13 (1) | | | | | | | +--Pasteurellales (1) | | | | | | | | | +--Pasteurellaceae (1) | | | | | | | | | +--Gallibacterium anatis UMN179 (1) | | | | | | | +--Enterobacterales (5) | | | | | | | | | +--Yersiniaceae (2) | | | | | | | | | | | +--Serratia sp. DD3 (2) | | | | | | | | | +--Morganellaceae (1) | | | | | | | | | | | +--Providencia (1) | | | | | | | | | | | +--Providencia burhodogranariea DSM 19968 (1) | | | | | | | | | +--Enterobacteriaceae (1) | | | | | | | | | | | +--Klebsiella (1) | | | | | | | | | | | +--Klebsiella pneumoniae IS43 (1) | | | | | | | | | +--Erwiniaceae (1) | | | | | | | | | +--Pantoea sp. PSNIH2 (1) | | | | | | | +--Aeromonadales (2) | | | | | | | | | +--Succinivibrionaceae (2) | | | | | | | | | +--Succinatimonas hippei YIT 12066 (2) | | | | | | | +--Methylococcales (38) | | | | | | | | | +--Crenotrichaceae (1) | | | | | | | | | | | +--Crenothrix polyspora (1) | | | | | | | | | +--Methylothermaceae (1) | | | | | | | | | | | +--Methylothermaceae bacteria B42 (1) | | | | | | | | | +--Methylococcaceae (36) | | | | | | | | | +--Methylomonas methanica MC09 (8) | | | | | | | | | +--Methylomonas sp. LWB (4) | | | | | | | | | +--Methylomicrobium album BG8 (2) | | | | | | | | | +--Methylomonas lenta (2) | | | | | | | | | +--Methyloprofundus sedimenti (20) | | | | | | | +--Alteromonadales (76) | | | | | | | | | +--Colwelliaceae (11) | | | | | | | | | | | +--Thalassomonas actiniarum (1) | | | | | | | | | | | +--Colwellia psychrerythraea 34H (1) | | | | | | | | | | | +--Thalassotalea sp. ND16A (1) | | | | | | | | | | | +--Colwellia sp. PAMC 21821 (1) | | | | | | | | | | | +--Colwellia sp. MT41 (7) | | | | | | | | | +--Pseudoalteromonadaceae (12) | | | | | | | | | | | +--Pseudoalteromonas piscicida (1) | | | | | | | | | | | +--Pseudoalteromonas tunicata D2 (4) | | | | | | | | | | | +--Pseudoalteromonas (2) | | | | | | | | | | | | | +--Pseudoalteromonas citrea DSM 8771 (2) | | | | | | | | | | | +--Pseudoalteromonas atlantica T6c (2) | | | | | | | | | | | +--Pseudoalteromonas porphyrae (2) | | | | | | | | | | | +--Pseudoalteromonas sp. A601 (1) | | | | | | | | | +--Shewanellaceae (15) | | | | | | | | | | | +--Shewanella oneidensis MR-1 (2) | | | | | | | | | | | +--Shewanella sp. P1-14-1 (1) | | | | | | | | | | | +--Shewanella baltica OS155 (1) | | | | | | | | | | | +--Shewanella baltica OS185 (2) | | | | | | | | | | | +--Shewanella putrefaciens 200 (1) | | | | | | | | | | | +--Shewanella woodyi ATCC 51908 (1) | | | | | | | | | | | +--Shewanella baltica OS195 (1) | | | | | | | | | | | +--Shewanella benthica KT99 (5) | | | | | | | | | | | +--Shewanella baltica OS223 (1) | | | | | | | | | +--Alteromonadaceae (38) | | | | | | | | | +--Catenovulum maritimum (2) | | | | | | | | | +--Marinobacter sp. AC-23 (1) | | | | | | | | | +--Marinobacter (2) | | | | | | | | | | | +--Marinobacter santoriniensis NKSG1 (2) | | | | | | | | | +--Glaciecola sp. BSs20135 (1) | | | | | | | | | +--Marinobacter sp. ELB17 (3) | | | | | | | | | +--Marinobacter aquaeolei VT8 (1) | | | | | | | | | +--Alteromonas sp. RW2A1 (2) | | | | | | | | | +--Marinobacter sp. T13-3 (1) | | | | | | | | | +--Marinobacter algicola DG893 (2) | | | | | | | | | +--Catenovulum (2) | | | | | | | | | | | +--Catenovulum agarivorans DS-2 (2) | | | | | | | | | +--Marinobacter lutaoensis (2) | | | | | | | | | +--Glaciecola (2) | | | | | | | | | | | +--Glaciecola pallidula DSM 14239 = ACAM 615 (2) | | | | | | | | | +--Marinobacter subterrani (4) | | | | | | | | | +--Alteromonas confluentis (10) | | | | | | | | | +--Marinobacter salinus (3) | | | | | | | +--Legionellales (3) | | | | | | | | | +--Legionellaceae (1) | | | | | | | | | | | +--Legionella jamestowniensis (1) | | | | | | | | | +--Coxiellaceae (2) | | | | | | | | | +--Coxiella sp. RIFCSPHIGHO2_12_FULL_44_14 (1) | | | | | | | | | +--Coxiella sp. RIFCSPHIGHO2_12_FULL_42_15 (1) | | | | | | | +--Xanthomonadales (3) | | | | | | | | | +--Rhodanobacteraceae (1) | | | | | | | | | | | +--Rhodanobacter sp. 115 (1) | | | | | | | | | +--Xanthomonadaceae (2) | | | | | | | | | +--Pseudoxanthomonas spadix BD-a59 (2) | | | | | | | +--Enterobacteriales (33) | | | | | | | | | +--Enterobacteriaceae (33) | | | | | | | | | +--Serratia sp. ATCC 39006 (2) | | | | | | | | | +--Serratia fonticola (4) | | | | | | | | | +--Escherichia coli SMS-3-5 (1) | | | | | | | | | +--Escherichia coli 101-1 (1) | | | | | | | | | +--Escherichia coli (1) | | | | | | | | | +--Pantoea stewartii subsp. stewartii DC283 (5) | | | | | | | | | +--Escherichia sp. 4_1_40B (1) | | | | | | | | | +--Sodalis glossinidius str. 'morsitans' (9) | | | | | | | | | +--Serratia (2) | | | | | | | | | | | +--Serratia symbiotica str. Tucson (2) | | | | | | | | | +--Escherichia coli S88 (1) | | | | | | | | | +--Xenorhabdus nematophila ATCC 19061 (2) | | | | | | | | | +--Escherichia blattae DSM 4481 (1) | | | | | | | | | +--Serratia symbiotica (2) | | | | | | | | | +--Providencia alcalifaciens DSM 30120 (1) | | | | | | | +--Oceanospirillales (83) | | | | | | | | | +--Hahellaceae (49) | | | | | | | | | | | +--Endozoicomonas numazuensis (26) | | | | | | | | | | | +--Hahella chejuensis KCTC 2396 (9) | | | | | | | | | | | +--Endozoicomonas montiporae (14) | | | | | | | | | +--Saccharospirillaceae (1) | | | | | | | | | | | +--Gynuella (1) | | | | | | | | | | | +--Gynuella sunshinyii YC6258 (1) | | | | | | | | | +--Endozoicomonaceae (1) | | | | | | | | | | | +--Endozoicomonas sp. (ex Bugula neritina AB1) (1) | | | | | | | | | +--Halomonadaceae (17) | | | | | | | | | | | +--Halomonas sp. 1513 (2) | | | | | | | | | | | +--Halomonas meridiana (3) | | | | | | | | | | | +--Halomonas sp. BC04 (1) | | | | | | | | | | | +--Halomonas sp. 54_146 (1) | | | | | | | | | | | +--Halomonas chromatireducens (2) | | | | | | | | | | | +--Halomonas (5) | | | | | | | | | | | | | +--Halomonas desiderata SP1 (5) | | | | | | | | | | | +--Halomonas sp. PBN3 (3) | | | | | | | | | +--Marinomonas mediterranea MMB-1 (1) | | | | | | | | | +--Oceanospirillaceae (13) | | | | | | | | | | | +--Oleispira (4) | | | | | | | | | | | | | +--Oleispira antarctica RB-8 (4) | | | | | | | | | | | +--Nitrincola nitratireducens (2) | | | | | | | | | | | +--Osedax symbiont Rs1 (3) | | | | | | | | | | | +--Nitrincola sp. A-D6 (1) | | | | | | | | | | | +--Neptuniibacter sp. Phe_28 (1) | | | | | | | | | | | +--Marinobacterium sp. ST58-10 (2) | | | | | | | | | +--Neptunomonas sp. S3-22 (1) | | | | | | | +--Pseudomonadales (59) | | | | | | | | | +--unclassifiedPseudomonadales (1) | | | | | | | | | | | +--Pseudomonadales bacterium RIFCSPLOWO2_02_FULL_63_210 (1) | | | | | | | | | +--Pseudomonadaceae (58) | | | | | | | | | +--Pseudomonas sp. G5(2012) (1) | | | | | | | | | +--Pseudomonas alkylphenolia (1) | | | | | | | | | +--Pseudomonas fluorescens HK44 (9) | | | | | | | | | +--Pseudomonas batumici (1) | | | | | | | | | +--Pseudomonas sp. 1 R 17 (1) | | | | | | | | | +--Pseudomonas sp. GM78 (1) | | | | | | | | | +--Pseudomonas sp. UW4 (1) | | | | | | | | | +--Pseudomonas putida KT2440 (9) | | | | | | | | | +--Azotobacter vinelandii DJ (12) | | | | | | | | | +--Pseudomonas sp. UK4 (1) | | | | | | | | | +--Pseudomonas putida CSV86 (1) | | | | | | | | | +--Pseudomonas syringae pv. tomato str. DC3000 (3) | | | | | | | | | +--Pseudomonas putida GB-1 (1) | | | | | | | | | +--Pseudomonas sp. BRH_c35 (1) | | | | | | | | | +--Pseudomonas (14) | | | | | | | | | | | +--Pseudomonassyringaegroup (1) | | | | | | | | | | | | | +--Pseudomonassyringaegroupgenomosp.1 (1) | | | | | | | | | | | | | +--Pseudomonassyringae (1) | | | | | | | | | | | | | +--Pseudomonassyringaegrouppathovarsincertaesedis (1) | | | | | | | | | | | | | +--Pseudomonas syringae pv. actinidiae ICMP 19096 (1) | | | | | | | | | | | +--Pseudomonas syringae pv. oryzae str. 1_6 (1) | | | | | | | | | | | +--Pseudomonasfluorescensgroup (2) | | | | | | | | | | | | | +--Pseudomonas fluorescens ABAC62 (2) | | | | | | | | | | | +--Pseudomonasaeruginosagroup (10) | | | | | | | | | | | +--Pseudomonasoleovorans/pseudoalcaligenesgroup (10) | | | | | | | | | | | +--Pseudomonas pseudoalcaligenes KF707 = NBRC 110670 (10) | | | | | | | | | +--Pseudomonas sp. 21C1 (1) | | | | | | | +--Immundisolibacterales (1) | | | | | | | | | +--Immundisolibacteraceae (1) | | | | | | | | | +--Immundisolibacter cernigliae (1) | | | | | | | +--Vibrionales (98) | | | | | | | | | +--Vibrionaceae (98) | | | | | | | | | +--Photobacterium proteolyticum (1) | | | | | | | | | +--Vibrio mytili (1) | | | | | | | | | +--Vibrio sp. C7 (1) | | | | | | | | | +--Vibrio cidicii (11) | | | | | | | | | +--Photobacterium (3) | | | | | | | | | | | +--Photobacteriumdamselae (3) | | | | | | | | | | | +--Photobacterium damselae subsp. piscicida DI21 (3) | | | | | | | | | +--Vibrio sp. F10 (1) | | | | | | | | | +--Vibrio harveyi ATCC BAA-1116 (35) | | | | | | | | | +--Vibrio metschnikovii CIP 69.14 (8) | | | | | | | | | +--Photobacterium profundum SS9 (8) | | | | | | | | | +--Photobacterium sp. Gung47 (19) | | | | | | | | | +--Photobacterium profundum (4) | | | | | | | | | +--Vibrio (3) | | | | | | | | | | | +--Vibrio rumoiensis 1S-45 (1) | | | | | | | | | | | +--Vibrio aerogenes CECT 7868 (1) | | | | | | | | | | | +--Vibrio genomosp. F6 str. FF-238 (1) | | | | | | | | | +--Photobacterium damselae subsp. damselae CIP 102761 (3) | | | | | | | +--Cellvibrionales (1) | | | | | | | | | +--Spongiibacteraceae (1) | | | | | | | | | +--gamma proteobacterium BDW918 (1) | | | | | | | +--Thiotrichales (12) | | | | | | | | | +--Thiotrichaceae (10) | | | | | | | | | | | +--Achromatium sp. WMS2 (8) | | | | | | | | | | | +--Candidatus Thiomargarita nelsonii (1) | | | | | | | | | | | +--Achromatium sp. WMS3 (1) | | | | | | | | | +--Piscirickettsiaceae (2) | | | | | | | | | +--Cycloclasticus sp. symbiont of Bathymodiolus heckerae (2) | | | | | | | +--Chromatiales (36) | | | | | | | | | +--Ectothiorhodospiraceae (17) | | | | | | | | | | | +--Thiorhodospira sibirica ATCC 700588 (3) | | | | | | | | | | | +--Halorhodospira (4) | | | | | | | | | | | | | +--Halorhodospira halochloris str. A (4) | | | | | | | | | | | +--Nitrococcus mobilis Nb-231 (5) | | | | | | | | | | | +--Ectothiorhodospira sp. PHS-1 (2) | | | | | | | | | | | +--Thioalkalivibrio (2) | | | | | | | | | | | | | +--Thioalkalivibrio nitratireducens DSM 14787 (2) | | | | | | | | | | | +--Acidiferrobacter thiooxydans (1) | | | | | | | | | +--Chromatiaceae (16) | | | | | | | | | | | +--Thiorhodococcus drewsii AZ1 (4) | | | | | | | | | | | +--Rheinheimera sp. A13L (1) | | | | | | | | | | | +--Thiorhodovibrio sp. 970 (1) | | | | | | | | | | | +--Allochromatium vinosum DSM 180 (2) | | | | | | | | | | | +--Thioflavicoccus (2) | | | | | | | | | | | | | +--Thioflavicoccus mobilis 8321 (2) | | | | | | | | | | | +--Thiocapsa marina 5811 (1) | | | | | | | | | | | +--Nitrosococcus halophilus Nc4 (3) | | | | | | | | | | | +--Thiohalocapsa (2) | | | | | | | | | | | +--uncultured Thiohalocapsa sp. PB-PSB1 (2) | | | | | | | | | +--Chromatiales bacterium (ex Bugula neritina AB1) (3) | | | | | | | +--Acidithiobacillales (3) | | | | | | | +--Acidithiobacillaceae (3) | | | | | | | +--Acidithiobacillus ferrooxidans ATCC 23270 (1) | | | | | | | +--Acidithiobacillus ferrooxidans ATCC 53993 (1) | | | | | | | +--Acidithiobacillus sp. GGI-221 (1) | | | | | +--Magnetococcus sp. MC-1 (9) | | | | | +--Betaproteobacteria (331) | | | | | | | +--unclassifiedBetaproteobacteria (26) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 (1) | | | | | | | | | +--Betaproteobacteria bacterium MOLA814 (2) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_02_67_12 (1) | | | | | | | | | +--Candidatus Accumulibacter sp. BA-93 (1) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_58 (5) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_19 (1) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_67_19 (1) | | | | | | | | | +--Candidatus Accumulibacter aalborgensis (1) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_67_28 (1) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_02_64_14 (1) | | | | | | | | | +--Candidatus Accumulibacter sp. SK-11 (3) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_68_20 (1) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_64_23 (2) | | | | | | | | | +--Candidatus Accumulibacter sp. SK-12 (2) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_66_14 (1) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_65_110 (1) | | | | | | | | | +--Betaproteobacteria bacterium RIFCSPLOWO2_12_61_14 (1) | | | | | | | +--Burkholderiales (261) | | | | | | | | | +--Alcaligenaceae (12) | | | | | | | | | | | +--Oligella (1) | | | | | | | | | | | | | +--Oligella urethralis DNF00040 (1) | | | | | | | | | | | +--Achromobacter sp. DMS1 (1) | | | | | | | | | | | +--Bordetella ansorpii (1) | | | | | | | | | | | +--Advenella (7) | | | | | | | | | | | | | +--Advenella mimigardefordensis DPN7 (7) | | | | | | | | | | | +--Bordetella petrii (2) | | | | | | | | | +--Burkholderiaceae (166) | | | | | | | | | | | +--Burkholderia terricola (1) | | | | | | | | | | | +--Burkholderia xenovorans LB400 (6) | | | | | | | | | | | +--Burkholderia sp. ST111 (1) | | | | | | | | | | | +--Cupriavidus basilensis (3) | | | | | | | | | | | +--Paraburkholderia ribeironis (1) | | | | | | | | | | | +--Paraburkholderia susongensis (1) | | | | | | | | | | | +--Paraburkholderia ginsengiterrae (1) | | | | | | | | | | | +--Burkholderia sp. SD3175 (6) | | | | | | | | | | | +--Burkholderia sp. AD24 (1) | | | | | | | | | | | +--Burkholderia graminis C4D1M (1) | | | | | | | | | | | +--Ralstonia eutropha H16 (2) | | | | | | | | | | | +--Caballeronia udeis (2) | | | | | | | | | | | +--Burkholderia rhizoxinica HKI 454 (2) | | | | | | | | | | | +--Burkholderia sp. OLGA172 (1) | | | | | | | | | | | +--Burkholderia (10) | | | | | | | | | | | | | +--Burkholderia oklahomensis EO147 (1) | | | | | | | | | | | | | +--Burkholderia cenocepacia J2315 (2) | | | | | | | | | | | | | +--Burkholderia cenocepacia MC0-3 (1) | | | | | | | | | | | | | +--Burkholderia ambifaria MEX-5 (2) | | | | | | | | | | | | | +--Burkholderia vietnamiensis G4 (4) | | | | | | | | | | | +--Burkholderia sp. BR2009044596 (4) | | | | | | | | | | | +--Burkholderia ubonensis Bu (1) | | | | | | | | | | | +--Burkholderia sp. BR2004143571 (44) | | | | | | | | | | | +--Candidatus Burkholderia crenata (54) | | | | | | | | | | | +--Burkholderia sp. LMG 22940 (1) | | | | | | | | | | | +--Caballeronia (1) | | | | | | | | | | | | | +--Caballeronia glathei PML1(12) (1) | | | | | | | | | | | +--Paraburkholderia piptadeniae (1) | | | | | | | | | | | +--Burkholderia sp. Leaf177 (1) | | | | | | | | | | | +--Burkholderia caryophylli (1) | | | | | | | | | | | +--Cupriavidus sp. UYMMa02A (2) | | | | | | | | | | | +--Burkholderia sp. lig30 (1) | | | | | | | | | | | +--Burkholderia ubonensis (1) | | | | | | | | | | | +--Caballeronia calidae (3) | | | | | | | | | | | +--Burkholderia sp. ATSB16 (5) | | | | | | | | | | | +--Candidatus Burkholderia verschuerenii (7) | | | | | | | | | +--Oxalobacteraceae (4) | | | | | | | | | | | +--Janthinobacterium sp. CG23_2 (2) | | | | | | | | | | | +--Massilia sp. LC238 (1) | | | | | | | | | | | +--Duganella sp. Root198D2 (1) | | | | | | | | | +--Sutterellaceae (11) | | | | | | | | | | | +--Sutterella (9) | | | | | | | | | | | | | +--Sutterella sp. CAG:521 (2) | | | | | | | | | | | | | +--Sutterella wadsworthensis CAG:135 (1) | | | | | | | | | | | | | +--Sutterella wadsworthensis 2_1_59BFAA (6) | | | | | | | | | | | +--Parasutterella (2) | | | | | | | | | | | +--Parasutterella excrementihominis CAG:233 (2) | | | | | | | | | +--unclassifiedBurkholderiales (34) | | | | | | | | | | | +--Burkholderiales bacterium 68-12 (2) | | | | | | | | | | | +--Burkholderiales bacterium RIFCSPLOWO2_12_FULL_61_40 (1) | | | | | | | | | | | +--Burkholderiales bacterium RIFCSPLOWO2_02_FULL_57_36 (3) | | | | | | | | | | | +--Burkholderiales bacterium YL45 (23) | | | | | | | | | | | +--Burkholderiales bacterium RIFOXYD12_FULL_59_19 (1) | | | | | | | | | | | +--Burkholderiales bacterium 70-64 (1) | | | | | | | | | | | +--BurkholderialesGeneraincertaesedis (2) | | | | | | | | | | | | | +--Rhizobacter sp. Root1221 (2) | | | | | | | | | | | +--Burkholderiales bacterium RIFOXYC12_FULL_65_23 (1) | | | | | | | | | +--Comamonadaceae (34) | | | | | | | | | +--Limnohabitans (1) | | | | | | | | | | | +--Limnohabitans planktonicus II-D5 (1) | | | | | | | | | +--CandidatusSymbiobacter (10) | | | | | | | | | | | +--Candidatus Symbiobacter mobilis CR (10) | | | | | | | | | +--Polaromonas sp. JS666 (3) | | | | | | | | | +--Hydrogenophaga sp. A37 (1) | | | | | | | | | +--Acidovorax temperans (1) | | | | | | | | | +--Acidovorax sp. JS42 (2) | | | | | | | | | +--Rhodoferax (5) | | | | | | | | | | | +--Rhodoferax antarcticus ANT.BR (5) | | | | | | | | | +--Variovorax paradoxus (6) | | | | | | | | | +--Variovorax sp. HW608 (5) | | | | | | | +--Rhodocyclales (10) | | | | | | | | | +--Rhodocyclaceae (7) | | | | | | | | | | | +--Thauera sp. 27 (1) | | | | | | | | | | | +--Thauera sp. 63 (3) | | | | | | | | | | | +--Azoarcus sp. KH32C (1) | | | | | | | | | | | +--Candidatus Propionivibrio aalborgensis (1) | | | | | | | | | | | +--Thauera (1) | | | | | | | | | | | +--Thauera terpenica 58Eu (1) | | | | | | | | | +--Rhodocyclales bacterium GWA2_65_20 (1) | | | | | | | | | +--Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 (2) | | | | | | | +--Candidatus Accumulibacter phosphatis clade IIA str. UW-1 (9) | | | | | | | +--Gallionellales (1) | | | | | | | | | +--Gallionellaceae (1) | | | | | | | | | +--Candidatus Gallionella acididurans (1) | | | | | | | +--Ferrovales (1) | | | | | | | | | +--Ferrovaceae (1) | | | | | | | | | +--Ferrovum sp. Z-31 (1) | | | | | | | +--Neisseriales (14) | | | | | | | | | +--Neisseriaceae (14) | | | | | | | | | +--Vitreoscilla filiformis (14) | | | | | | | +--Nitrosomonadales (8) | | | | | | | | | +--Nitrosomonadaceae (6) | | | | | | | | | | | +--Nitrosospira sp. Nsp11 (1) | | | | | | | | | | | +--Nitrosomonas europaea ATCC 19718 (3) | | | | | | | | | | | +--Nitrosomonas sp. Is79A3 (1) | | | | | | | | | | | +--Nitrosomonas (1) | | | | | | | | | | | +--Nitrosomonas cryotolerans ATCC 49181 (1) | | | | | | | | | +--Gallionellales bacterium RIFOXYB12_FULL_54_9 (1) | | | | | | | | | +--Gallionellales bacterium RIFCSPHIGHO2_02_FULL_57_16 (1) | | | | | | | +--Hydrogenophilales (1) | | | | | | | +--Hydrogenophilaceae (1) | | | | | | | +--Thiobacillus sp. SCN 63-374 (1) | | | | | +--delta proteobacterium NaphS2 (5) | | | | | +--unclassifiedProteobacteria (1) | | | | | | | +--Proteobacteria bacterium SG_bin7 (1) | | | | | +--Candidatus Muproteobacteria bacterium RIFCSPLOWO2_01_FULL_60_18 (2) | | | +--unclassifiedBacteria (17) | | | | | +--bacterium CG2_30_54_10 (1) | | | | | +--bacterium F16 (1) | | | | | +--bacterium B13(2017) (1) | | | | | +--bacterium M21 (1) | | | | | +--Bacteriacandidatephyla (13) | | | | | +--candidatedivisionNC10 (4) | | | | | | | +--candidate division NC10 bacterium RIFCSPLOWO2_02_FULL_66_22 (4) | | | | | +--CandidatusAtribacteria (1) | | | | | | | +--Candidatus Atribacteria bacterium 4572_76 (1) | | | | | +--CandidatusDependentiae (1) | | | | | | | +--candidate division TM6 bacterium GW2011_GWF2_37_49 (1) | | | | | +--Candidatus Riflebacteria bacterium GWC2_50_8 (1) | | | | | +--candidatedivisionKSB1 (1) | | | | | | | +--candidate division KSB1 bacterium RBG_16_48_16 (1) | | | | | +--Candidatus Margulisbacteria bacterium GWE2_39_32 (3) | | | | | +--Candidatus Riflebacteria bacterium RBG_13_59_9 (1) | | | | | +--Candidatus Firestonebacteria bacterium RIFOXYC2_FULL_39_67 (1) | | | +--Planctomycetes (6) | | | | | +--Planctomycetacia (6) | | | | | +--Planctomycetales (6) | | | | | +--Candidatus Brocadia caroliniensis (1) | | | | | +--Planctomycetaceae (5) | | | | | +--Rhodopirellula baltica SH 1 (1) | | | | | +--Rhodopirellula sp. SWK7 (1) | | | | | +--Gemmata obscuriglobus UQM 2246 (1) | | | | | +--Blastopirellula marina DSM 3645 (2) | | | +--Lentisphaerae (5) | | | | | +--Lentisphaerales (5) | | | | | +--Lentisphaeraceae (5) | | | | | +--Lentisphaera araneosa HTCC2155 (5) | | | +--Spirochaetes (21) | | | | | +--Spirochaetes bacterium GWB1_66_5 (2) | | | | | +--Spirochaetia (14) | | | | | | | +--Spirochaetales (14) | | | | | | | +--Spirochaetaceae (14) | | | | | | | +--Spirochaeta (1) | | | | | | | | | +--Spirochaeta africana DSM 8902 (1) | | | | | | | +--Treponema sp. GWC1_61_84 (2) | | | | | | | +--Marispirochaeta aestuarii (1) | | | | | | | +--Salinispira pacifica (10) | | | | | +--Spirochaetales (2) | | | | | | | +--Spirochaetaceae (2) | | | | | | | +--Spirochaeta sp. Buddy (1) | | | | | | | +--Spirochaeta sp. Grapes (1) | | | | | +--Spirochaetes bacterium GWC1_61_12 (1) | | | | | +--Spirochaetes bacterium RBG_16_67_19 (1) | | | | | +--Spirochaetes bacterium DG_61 (1) | | | +--Synergistetes (9) | | | | | +--Synergistia (9) | | | | | +--Synergistales (9) | | | | | +--Synergistaceae (9) | | | | | +--Synergistes jonesii (2) | | | | | +--Synergistes sp. 3_1_syn1 (2) | | | | | +--Cloacibacillus (5) | | | | | +--Cloacibacillus evryensis DSM 19522 (5) | | | +--Firmicutes (994) | | | | | +--Clostridia (435) | | | | | | | +--Thermoanaerobacterales (39) | | | | | | | | | +--ThermoanaerobacteralesFamilyIII.IncertaeSedis (5) | | | | | | | | | | | +--Thermovenabulum sp. R270 (4) | | | | | | | | | | | +--Thermosediminibacter oceani DSM 16646 (1) | | | | | | | | | +--Thermoanaerobacteraceae (34) | | | | | | | | | +--Thermoanaerobacter tengcongensis MB4 (1) | | | | | | | | | +--Thermoanaerobacter sp. X514 (1) | | | | | | | | | +--Moorellagroup (7) | | | | | | | | | | | +--Ammonifex degensii KC4 (3) | | | | | | | | | | | +--Moorella glycerini (1) | | | | | | | | | | | +--Moorella thermoacetica ATCC 39073 (3) | | | | | | | | | +--Fervidicola ferrireducens (4) | | | | | | | | | +--Thermoanaerobacter pseudethanolicus ATCC 33223 (21) | | | | | | | +--Clostridiales bacterium 1_7_47FAA (4) | | | | | | | +--Halanaerobiales (6) | | | | | | | | | +--Halanaerobiaceae (6) | | | | | | | | | +--Halanaerobium kushneri (1) | | | | | | | | | +--Halanaerobium hydrogeniformans (4) | | | | | | | | | +--Halanaerobium praevalens DSM 2228 (1) | | | | | | | +--Natranaerobiales (63) | | | | | | | | | +--Natranaerobiaceae (63) | | | | | | | | | +--Natranaerobius trueperi (35) | | | | | | | | | +--Natranaerobius thermophilus JW/NM-WN-LF (28) | | | | | | | +--Clostridiales (323) | | | | | | | +--Lachnospiraceae bacterium 6_1_63FAA (1) | | | | | | | +--Heliobacteriaceae (22) | | | | | | | | | +--Heliobacterium modesticaldum Ice1 (22) | | | | | | | +--ClostridialesFamilyXII.IncertaeSedis (1) | | | | | | | | | +--Fusibacter sp. 3-D3-R-P8ASC2010 (1) | | | | | | | +--Peptostreptococcaceae (2) | | | | | | | | | +--Peptostreptococcus stomatis DSM 17678 (2) | | | | | | | +--Eubacteriaceae (22) | | | | | | | | | +--Eubacterium rectale M104/1 (1) | | | | | | | | | +--Acetobacterium bakii (1) | | | | | | | | | +--Eubacterium rectale ATCC 33656 (12) | | | | | | | | | +--Acetobacterium wieringae (4) | | | | | | | | | +--Eubacterium uniforme (2) | | | | | | | | | +--Eubacterium cellulosolvens 6 (1) | | | | | | | | | +--Eubacterium sp. AS15b (1) | | | | | | | +--Lachnospiraceae (25) | | | | | | | | | +--Marvinbryantia formatexigens DSM 14469 (6) | | | | | | | | | +--Roseburia hominis A2-183 (3) | | | | | | | | | +--Catonella morbi ATCC 51271 (5) | | | | | | | | | +--Dorea formicigenerans ATCC 27755 (1) | | | | | | | | | +--Butyrivibrio proteoclasticus B316 (1) | | | | | | | | | +--Roseburia intestinalis XB6B4 (1) | | | | | | | | | +--Clostridium proteoclasticum (2) | | | | | | | | | +--Roseburia inulinivorans DSM 16841 (1) | | | | | | | | | +--Oribacterium sp. ACB1 (3) | | | | | | | | | +--Lachnobacterium bovis (2) | | | | | | | +--ClostridialesFamilyXVIII.IncertaeSedis (32) | | | | | | | | | +--Symbiobacterium thermophilum IAM 14863 (32) | | | | | | | +--Ruminococcaceae (9) | | | | | | | | | +--Ruminococcus gnavus ATCC 29149 (1) | | | | | | | | | +--Bacteroides cellulosolvens ATCC 35603 (3) | | | | | | | | | +--Ruminococcus torques ATCC 27756 (1) | | | | | | | | | +--Acetivibrio ethanolgignens (3) | | | | | | | | | +--Ruminococcus torques L2-14 (1) | | | | | | | +--Lachnospiraceae bacterium 3_1_57FAA_CT1 (1) | | | | | | | +--ClostridialesFamilyXI.IncertaeSedis (10) | | | | | | | | | +--Anaerococcus prevotii DSM 20548 (1) | | | | | | | | | +--Peptoniphilus indolicus ATCC 29427 (1) | | | | | | | | | +--Anaerococcus lactolyticus ATCC 51172 (4) | | | | | | | | | +--Anaerococcus tetradius ATCC 35098 (2) | | | | | | | | | +--Peptoniphilus duerdenii ATCC BAA-1640 (2) | | | | | | | +--Lachnospiraceae bacterium A2 (1) | | | | | | | +--ClostridialesFamilyXIII.IncertaeSedis (26) | | | | | | | | | +--Mogibacterium sp. CM50 (1) | | | | | | | | | +--Mogibacterium pumilum (25) | | | | | | | +--Clostridiaceae (113) | | | | | | | | | +--Thermotalea metallivorans (21) | | | | | | | | | +--Clostridium pasteurianum BC1 (3) | | | | | | | | | +--Clostridium saccharolyticum WM1 (2) | | | | | | | | | +--Clostridium tetani E88 (2) | | | | | | | | | +--Clostridium thermoalcaliphilum (1) | | | | | | | | | +--Clostridium sp. M62/1 (1) | | | | | | | | | +--Clostridium sp. 232.1 (3) | | | | | | | | | +--Clostridium bolteae ATCC BAA-613 (1) | | | | | | | | | +--Clostridium sp. D5 (11) | | | | | | | | | +--Clostridium sp. 7_2_43FAA (2) | | | | | | | | | +--Clostridium phytofermentans ISDg (1) | | | | | | | | | +--Clostridium saccharoperbutylacetonicum ATCC 27021 (7) | | | | | | | | | +--Clostridium cellulovorans 743B (1) | | | | | | | | | +--Clostridium roseum (9) | | | | | | | | | +--Clostridium sulfidigenes (2) | | | | | | | | | +--Clostridium botulinum E3 str. Alaska E43 (1) | | | | | | | | | +--Clostridium sp. ASF502 (1) | | | | | | | | | +--Clostridium asparagiforme DSM 15981 (2) | | | | | | | | | +--Clostridium estertheticum subsp. estertheticum (3) | | | | | | | | | +--Clostridium acetobutylicum ATCC 824 (2) | | | | | | | | | +--Clostridium hungatei (1) | | | | | | | | | +--Clostridium sp. DL-VIII (2) | | | | | | | | | +--Clostridium puniceum (4) | | | | | | | | | +--Clostridium paraputrificum (1) | | | | | | | | | +--Alkaliphilus oremlandii OhILAs (2) | | | | | | | | | +--Clostridium sp. SY8519 (3) | | | | | | | | | +--Clostridium halophilum (5) | | | | | | | | | +--Clostridium botulinum A2 str. Kyoto (1) | | | | | | | | | +--Clostridium symbiosum WAL-14163 (13) | | | | | | | | | +--Clostridium neopropionicum (1) | | | | | | | | | +--Clostridium botulinum A str. ATCC 3502 (2) | | | | | | | | | +--Caloramator mitchellensis (2) | | | | | | | +--Lachnospiraceae bacterium 3-1 (4) | | | | | | | +--Syntrophomonadaceae (7) | | | | | | | | | +--Syntrophothermus lipocalidus DSM 12680 (1) | | | | | | | | | +--Dethiobacter alkaliphilus AHT 1 (2) | | | | | | | | | +--Syntrophomonas wolfei subsp. wolfei str. Goettingen (4) | | | | | | | +--Peptococcaceae (39) | | | | | | | | | +--Thermincola potens JR (5) | | | | | | | | | +--Desulfotomaculum kuznetsovii DSM 6115 (2) | | | | | | | | | +--Syntrophobotulus glycolicus DSM 8271 (1) | | | | | | | | | +--Desulfotomaculum carboxydivorans CO-1-SRB (6) | | | | | | | | | +--Desulfosporosinus orientis DSM 765 (5) | | | | | | | | | +--Pelotomaculum thermopropionicum SI (3) | | | | | | | | | +--Candidatus Desulforudis audaxviator MP104C (1) | | | | | | | | | +--Desulfitobacterium hafniense Y51 (6) | | | | | | | | | +--Desulfotomaculum gibsoniae DSM 7213 (3) | | | | | | | | | +--Desulfosporosinus youngiae DSM 17734 (2) | | | | | | | | | +--Desulfitobacterium metallireducens DSM 15288 (4) | | | | | | | | | +--Desulfosporosinus sp. OT (1) | | | | | | | +--ClostridialesFamilyXVII.IncertaeSedis (2) | | | | | | | | | +--Sulfobacillus acidophilus TPY (2) | | | | | | | +--Lachnospiraceae bacterium 5_1_57FAA (1) | | | | | | | +--Lachnospiraceae bacterium 28-4 (4) | | | | | | | +--Lachnospiraceae bacterium A4 (1) | | | | | +--Lactobacillales (121) | | | | | | | +--Carnobacteriaceae (28) | | | | | | | | | +--Carnobacterium sp. LMG 26642 (9) | | | | | | | | | +--Carnobacterium sp. AT7 (1) | | | | | | | | | +--Trichococcus sp. R210 (18) | | | | | | | +--Streptococcaceae (28) | | | | | | | | | +--Streptococcus pneumoniae TCH8431/19A (1) | | | | | | | | | +--Streptococcus henryi (2) | | | | | | | | | +--Streptococcus agalactiae serogroup III (1) | | | | | | | | | +--Streptococcus pneumoniae ATCC 700669 (1) | | | | | | | | | +--Streptococcus infantarius subsp. infantarius ATCC BAA-102 (1) | | | | | | | | | +--Streptococcus pneumoniae R6 (3) | | | | | | | | | +--Streptococcus pneumoniae G54 (1) | | | | | | | | | +--Streptococcus pneumoniae Taiwan19F-14 (1) | | | | | | | | | +--Streptococcus pneumoniae JJA (1) | | | | | | | | | +--Streptococcus infantis SK1302 (1) | | | | | | | | | +--Streptococcus pneumoniae 70585 (1) | | | | | | | | | +--Streptococcus gallolyticus (5) | | | | | | | | | +--Streptococcus agalactiae 2603V/R (1) | | | | | | | | | +--Streptococcus pneumoniae SP6-BS73 (3) | | | | | | | | | +--Streptococcus agalactiae (2) | | | | | | | | | +--Streptococcus uberis (1) | | | | | | | | | +--Streptococcus pneumoniae Hungary19A-6 (1) | | | | | | | | | +--Streptococcus pyogenes MGAS10750 (1) | | | | | | | +--Enterococcaceae (24) | | | | | | | | | +--Pilibacter termitis (1) | | | | | | | | | +--Tetragenococcus halophilus NBRC 12172 (20) | | | | | | | | | +--Enterococcus aquimarinus (1) | | | | | | | | | +--Enterococcus faecium DO (1) | | | | | | | | | +--Enterococcus sp. HAMBI 3055 (1) | | | | | | | +--Lactobacillaceae (40) | | | | | | | | | +--Lactobacillus plantarum WCFS1 (2) | | | | | | | | | +--Lactobacillus vaginalis ATCC 49540 (1) | | | | | | | | | +--Sharpea azabuensis (1) | | | | | | | | | +--Lactobacillus reuteri DSM 20016 (12) | | | | | | | | | +--Lactobacillus oris PB013-T2-3 (1) | | | | | | | | | +--Lactobacillus casei ATCC 334 (2) | | | | | | | | | +--Lactobacillus reuteri JCM 1112 (4) | | | | | | | | | +--Lactobacillus pobuzihii (3) | | | | | | | | | +--Lactobacillus crispatus ST1 (1) | | | | | | | | | +--Lactobacillus acidipiscis (2) | | | | | | | | | +--Lactobacillus crispatus JV-V01 (1) | | | | | | | | | +--Lactobacillus salivarius UCC118 (2) | | | | | | | | | +--Lactobacillus ingluviei (2) | | | | | | | | | +--Lactobacillus fermentum CECT 5716 (1) | | | | | | | | | +--Lactobacillus brevis ATCC 367 (2) | | | | | | | | | +--Lactobacillus helveticus DPC 4571 (1) | | | | | | | | | +--Lactobacillus reuteri (1) | | | | | | | | | +--Lactobacillus reuteri 100-23 (1) | | | | | | | +--Aerococcaceae (1) | | | | | | | +--Abiotrophia defectiva ATCC 49176 (1) | | | | | +--Negativicutes (27) | | | | | | | +--Selenomonadales (27) | | | | | | | +--Acidaminococcaceae (6) | | | | | | | | | +--Acidaminococcus sp. D21 (1) | | | | | | | | | +--Acidaminococcus intestini RyC-MR95 (5) | | | | | | | +--Veillonellaceae (21) | | | | | | | +--Anaerovibrio lipolyticus (1) | | | | | | | +--Sporomusa malonica (3) | | | | | | | +--Thermosinus carboxydivorans Nor1 (9) | | | | | | | +--Selenomonas sputigena ATCC 35185 (2) | | | | | | | +--Megasphaera elsdenii DSM 20460 (6) | | | | | +--Bacillales (372) | | | | | | | +--Staphylococcus simiae CCM 7213 (1) | | | | | | | +--Bacillus tusciae DSM 2912 (2) | | | | | | | +--Planococcaceae (17) | | | | | | | | | +--Sporosarcina psychrophila (2) | | | | | | | | | +--Planomicrobium glaciei (12) | | | | | | | | | +--'Jeotgalibacillus soli' Cunha et al. 2011 (1) | | | | | | | | | +--Sporosarcina newyorkensis 2681 (2) | | | | | | | +--Staphylococcus pseudintermedius (10) | | | | | | | +--Bacillaceae (264) | | | | | | | | | +--Oceanobacillus iheyensis HTE831 (7) | | | | | | | | | +--Bacillus pseudalcaliphilus (4) | | | | | | | | | +--Geobacillus kaustophilus HTA426 (2) | | | | | | | | | +--Bacillus shackletonii (23) | | | | | | | | | +--Virgibacillus pantothenticus (8) | | | | | | | | | +--Bacillus krulwichiae (3) | | | | | | | | | +--Bacillus coahuilensis m4-4 (2) | | | | | | | | | +--Bacillus thermozeamaize (8) | | | | | | | | | +--Bacillus arseniciselenatis (5) | | | | | | | | | +--Geobacillus sp. WCH70 (6) | | | | | | | | | +--Bacillus coagulans 36D1 (5) | | | | | | | | | +--Bacillus galactosidilyticus (2) | | | | | | | | | +--Bacillus pseudofirmus OF4 (2) | | | | | | | | | +--Bacillus vietnamensis (6) | | | | | | | | | +--Bacillus macroides (1) | | | | | | | | | +--Bacillus thermoamylovorans (2) | | | | | | | | | +--Virgibacillus sp. CC-YMP-6 (2) | | | | | | | | | +--Bacillus methanolicus MGA3 (15) | | | | | | | | | +--Bacillus litoralis (5) | | | | | | | | | +--Virgibacillus chiguensis (1) | | | | | | | | | +--Bacillus smithii (51) | | | | | | | | | +--Oceanobacillus oncorhynchi (7) | | | | | | | | | +--Bacillus arsenicus (1) | | | | | | | | | +--Anaerobacillus alkalilacustre (4) | | | | | | | | | +--Aeribacillus pallidus (8) | | | | | | | | | +--Bacillus subterraneus (1) | | | | | | | | | +--Bacillus schlegelii (1) | | | | | | | | | +--Salimicrobium sp. ISL-25 (1) | | | | | | | | | +--Bacillus sp. NRRL B-14911 (1) | | | | | | | | | +--Geobacillus sp. Y4.1MC1 (1) | | | | | | | | | +--Caldalkalibacillus thermarum TA2.A1 (1) | | | | | | | | | +--Lysinibacillus xylanilyticus (1) | | | | | | | | | +--Bacillus coagulans 2-6 (1) | | | | | | | | | +--Bacillus ginsengihumi (2) | | | | | | | | | +--Geobacillus sp. Y412MC52 (1) | | | | | | | | | +--Bacillus cellulosilyticus DSM 2522 (6) | | | | | | | | | +--Bacillus circulans (3) | | | | | | | | | +--Ornithinibacillus sp. G8B(2010) (1) | | | | | | | | | +--Oceanobacillus picturae (2) | | | | | | | | | +--Bacillus sp. NIOC16 (1) | | | | | | | | | +--Bacillus halodurans C-125 (7) | | | | | | | | | +--Bacillus halmapalus (1) | | | | | | | | | +--Geobacillus stearothermophilus (1) | | | | | | | | | +--Bacillus (3) | | | | | | | | | | | +--Bacillus thuringiensis serovar pakistani str. T13001 (1) | | | | | | | | | | | +--Bacillus cytotoxicus NVH 391-98 (2) | | | | | | | | | +--Bacillus selenitireducens MLS10 (13) | | | | | | | | | +--Geobacillus debilis (8) | | | | | | | | | +--Anoxybacillus flavithermus (2) | | | | | | | | | +--Bacillus sp. 2_A_57_CT2 (12) | | | | | | | | | +--Anoxybacillus amylolyticus (8) | | | | | | | | | +--Anoxybacillus flavithermus WK1 (2) | | | | | | | | | +--Bacillus sp. OxB-1 (1) | | | | | | | | | +--Virgibacillus necropolis (2) | | | | | | | +--Paenibacillaceae (53) | | | | | | | | | +--Paenibacillus polymyxa SC2 (1) | | | | | | | | | +--Thermobacillus composti KWC4 (13) | | | | | | | | | +--Brevibacillus sp. WF146 (1) | | | | | | | | | +--Paenibacillus naphthalenovorans (5) | | | | | | | | | +--Paenibacillus stellifer (10) | | | | | | | | | +--Paenibacillus sp. MY03 (1) | | | | | | | | | +--Paenibacillus pectinilyticus (1) | | | | | | | | | +--Paenibacillus macerans (4) | | | | | | | | | +--Paenibacillus riograndensis SBR5 (2) | | | | | | | | | +--Brevibacillus brevis NBRC 100599 (7) | | | | | | | | | +--Paenibacillus larvae subsp. larvae BRL-230010 (1) | | | | | | | | | +--Aneurinibacillusgroup (1) | | | | | | | | | | | +--Aneurinibacillus migulanus (1) | | | | | | | | | +--Paenibacillus wynnii (2) | | | | | | | | | +--Paenibacillus sp. oral taxon 786 str. D14 (4) | | | | | | | +--Alicyclobacillaceae (16) | | | | | | | | | +--Alicyclobacillus macrosporangiidus (3) | | | | | | | | | +--Alicyclobacillus ferrooxydans (10) | | | | | | | | | +--Alicyclobacillus acidocaldarius LAA1 (1) | | | | | | | | | +--Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 (2) | | | | | | | +--Sporolactobacillaceae (1) | | | | | | | | | +--Sporolactobacillus inulinus CASD (1) | | | | | | | +--Staphylococcus microti (6) | | | | | | | +--Thermoactinomycetaceae (2) | | | | | | | +--Desmospora sp. 8437 (2) | | | | | +--Erysipelotrichi (39) | | | | | +--Erysipelotrichales (39) | | | | | +--Eubacterium dolichum DSM 3991 (3) | | | | | +--Erysipelotrichaceae (5) | | | | | | | +--Solobacterium moorei F0204 (5) | | | | | +--Clostridium spiroforme DSM 1552 (27) | | | | | +--Eubacterium biforme DSM 3989 (2) | | | | | +--Erysipelotrichaceae bacterium 3_1_53 (2) | | | +--Balneolaeota (1) | | | | | +--Balneolia (1) | | | | | +--Balneolales (1) | | | | | +--Balneolaceae (1) | | | | | +--Aliifodinibius roseus (1) | | | +--Verrucomicrobia (10) | | | | | +--Spartobacteria (10) | | | | | +--Chthoniobacter flavus Ellin428 (10) | | | +--Terrabacteriagroup (816) | | | | | +--Tenericutes (2) | | | | | | | +--Mollicutes (2) | | | | | | | +--Mycoplasmatales (2) | | | | | | | +--Mycoplasmataceae (2) | | | | | | | +--Mycoplasma (1) | | | | | | | | | +--Mycoplasma sp. CAG:956 (1) | | | | | | | +--Mycoplasma sp. CAG:611_25_7 (1) | | | | | +--Actinobacteria (22) | | | | | | | +--Coriobacteriia (1) | | | | | | | | | +--Coriobacteriales (1) | | | | | | | | | +--Atopobiaceae (1) | | | | | | | | | +--Olsenella (1) | | | | | | | | | +--Olsenella profusa F0195 (1) | | | | | | | +--Actinobacteria (14) | | | | | | | | | +--Streptomycetales (1) | | | | | | | | | | | +--Streptomycetaceae (1) | | | | | | | | | | | +--Streptomyces pluripotens (1) | | | | | | | | | +--unclassifiedActinobacteria(class) (1) | | | | | | | | | | | +--Actinobacteria bacterium OK006 (1) | | | | | | | | | +--Corynebacteriales (2) | | | | | | | | | | | +--Corynebacteriaceae (1) | | | | | | | | | | | | | +--Corynebacterium (1) | | | | | | | | | | | | | +--Corynebacterium freneyi DNF00450 (1) | | | | | | | | | | | +--Gordoniaceae (1) | | | | | | | | | | | +--Gordonia (1) | | | | | | | | | | | +--Gordonia hirsuta DSM 44140 = NBRC 16056 (1) | | | | | | | | | +--Frankiales (1) | | | | | | | | | | | +--Frankiaceae (1) | | | | | | | | | | | +--Frankia sp. BMG5.36 (1) | | | | | | | | | +--Micrococcales (9) | | | | | | | | | +--Micrococcaceae (9) | | | | | | | | | +--Arthrobacter sp. 7749 (1) | | | | | | | | | +--Arthrobacter sp. UCD-GKA (1) | | | | | | | | | +--Glutamicibacter (3) | | | | | | | | | | | +--Glutamicibacter arilaitensis Re117 (3) | | | | | | | | | +--Paeniglutamicibacter (1) | | | | | | | | | | | +--Paeniglutamicibacter gangotriensis Lz1y (1) | | | | | | | | | +--Arthrobacter (1) | | | | | | | | | | | +--Arthrobacter crystallopoietes BAB-32 (1) | | | | | | | | | +--Enteractinococcus helveticum (1) | | | | | | | | | +--Arthrobacter sp. PAMC 25486 (1) | | | | | | | +--Actinobacteria bacterium RBG_13_35_12 (1) | | | | | | | +--Actinobacteria bacterium CG2_30_50_142 (6) | | | | | +--Cyanobacteria/Melainabacteriagroup (8) | | | | | | | +--Cyanobacteria (8) | | | | | | | +--Synechococcales (8) | | | | | | | +--Leptolyngbyaceae (8) | | | | | | | +--Halomicronema (3) | | | | | | | | | +--Halomicronema hongdechloris C2206 (3) | | | | | | | +--Leptolyngbya sp. 'hensonii' (4) | | | | | | | +--Leptolyngbya sp. Heron Island J (1) | | | | | +--Chloroflexi (7) | | | | | | | +--unclassifiedChloroflexi (6) | | | | | | | | | +--Chloroflexi bacterium 13_1_20CM_54_36 (1) | | | | | | | | | +--Chloroflexi bacterium RBG_16_63_12 (1) | | | | | | | | | +--Chloroflexi bacterium RBG_16_48_8 (4) | | | | | | | +--Anaerolineae (1) | | | | | | | +--Anaerolineae bacterium CG1_02_58_13 (1) | | | | | +--Firmicutes (777) | | | | | +--Firmicutes bacterium CAG:536 (1) | | | | | +--Limnochordia (2) | | | | | | | +--Limnochordales (2) | | | | | | | +--Limnochordaceae (2) | | | | | | | +--Limnochorda pilosa (2) | | | | | +--Firmicutes bacterium CAG:272 (2) | | | | | +--unclassifiedFirmicutessensustricto (1) | | | | | | | +--Firmicutes bacterium CAG:272_52_7 (1) | | | | | +--Erysipelotrichia (42) | | | | | | | +--Erysipelotrichales (42) | | | | | | | +--Erysipelotrichaceae (42) | | | | | | | +--Turicibacter sp. H121 (1) | | | | | | | +--Faecalibaculum rodentium (28) | | | | | | | +--Candidatus Stoquefichus sp. KLE1796 (2) | | | | | | | +--unclassifiedErysipelotrichaceae (2) | | | | | | | | | +--Erysipelotrichaceae bacterium NYU-BL-F16 (1) | | | | | | | | | +--Erysipelotrichaceae bacterium MTC7 (1) | | | | | | | +--Erysipelothrix larvae (3) | | | | | | | +--Coprobacillus (5) | | | | | | | | | +--Coprobacillus sp. CAG:235 (1) | | | | | | | | | +--Coprobacillus sp. CAG:183 (3) | | | | | | | | | +--Coprobacillus sp. CAG:605 (1) | | | | | | | +--Catenibacterium (1) | | | | | | | +--Catenibacterium sp. CAG:290 (1) | | | | | +--Clostridia (323) | | | | | | | +--Thermoanaerobacterales (20) | | | | | | | | | +--Thermoanaerobacterales bacterium 50_218 (1) | | | | | | | | | +--Thermoanaerobacteraceae (19) | | | | | | | | | +--Thermanaeromonas (6) | | | | | | | | | | | +--Thermanaeromonas toyohensis ToBE (6) | | | | | | | | | +--Thermacetogenium (13) | | | | | | | | | +--Thermacetogenium phaeum DSM 12270 (13) | | | | | | | +--Halanaerobiales (15) | | | | | | | | | +--Halobacteroidaceae (15) | | | | | | | | | +--Halobacteroides (15) | | | | | | | | | +--Halobacteroides halobius DSM 5150 (15) | | | | | | | +--Clostridiales (288) | | | | | | | +--Ruminococcaceae (6) | | | | | | | | | +--Faecalibacterium (2) | | | | | | | | | | | +--Faecalibacterium sp. CAG:74 (2) | | | | | | | | | +--Ruminococcus sp. DSM 100440 (2) | | | | | | | | | +--Ruminiclostridium (1) | | | | | | | | | | | +--[Clostridium] straminisolvens JCM 21531 (1) | | | | | | | | | +--Ruminococcaceae bacterium (1) | | | | | | | +--Peptostreptococcaceae (9) | | | | | | | | | +--Peptoclostridium (5) | | | | | | | | | | | +--Peptoclostridium acidaminophilum DSM 3953 (5) | | | | | | | | | +--Terrisporobacter othiniensis (1) | | | | | | | | | +--unclassifiedPeptostreptococcaceae (3) | | | | | | | | | +--Peptostreptococcaceae bacterium oral taxon 113 str. W5053 (3) | | | | | | | +--Eubacteriaceae (22) | | | | | | | | | +--Eubacteriaceae bacterium CHKCI004 (2) | | | | | | | | | +--Eubacterium sp. 68-3-10 (6) | | | | | | | | | +--Eubacterium sp. 14-2 (1) | | | | | | | | | +--Acetobacterium (1) | | | | | | | | | | | +--Acetobacterium woodii DSM 1030 (1) | | | | | | | | | +--Eubacterium sp. 3_1_31 (4) | | | | | | | | | +--Eubacterium (6) | | | | | | | | | | | +--Eubacterium plexicaudatum ASF492 (2) | | | | | | | | | | | +--Eubacterium sp. CAG:38 (1) | | | | | | | | | | | +--Eubacterium dolichum CAG:375 (3) | | | | | | | | | +--Eubacterium sp. An11 (2) | | | | | | | +--Clostridiaceae (88) | | | | | | | | | +--Clostridium sp. BL8 (4) | | | | | | | | | +--Thermobrachium (1) | | | | | | | | | | | +--Thermobrachium celere DSM 8682 (1) | | | | | | | | | +--Caloramator quimbayensis (7) | | | | | | | | | +--Hathewaya (1) | | | | | | | | | | | +--Hathewaya proteolytica DSM 3090 (1) | | | | | | | | | +--Clostridium amylolyticum (2) | | | | | | | | | +--Clostridium sp. Maddingley MBC34-26 (2) | | | | | | | | | +--Clostridium oryzae (2) | | | | | | | | | +--Lutispora (4) | | | | | | | | | | | +--Lutispora thermophila DSM 19022 (4) | | | | | | | | | +--Clostridium sp. KLE 1755 (1) | | | | | | | | | +--Caloranaerobacter (5) | | | | | | | | | | | +--Caloranaerobacter azorensis H53214 (5) | | | | | | | | | +--Clostridium (30) | | | | | | | | | | | +--Clostridium clostridioforme CAG:132 (3) | | | | | | | | | | | +--Clostridium saccharobutylicum DSM 13864 (2) | | | | | | | | | | | +--Clostridium sp. CAG:352 (1) | | | | | | | | | | | +--Clostridium sp. CAG:921 (2) | | | | | | | | | | | +--Clostridium sp. CAG:307 (1) | | | | | | | | | | | +--Clostridium argentinense CDC 2741 (2) | | | | | | | | | | | +--Clostridium collagenovorans DSM 3089 (2) | | | | | | | | | | | +--Clostridium tepidiprofundi DSM 19306 (1) | | | | | | | | | | | +--Clostridium nexile CAG:348 (1) | | | | | | | | | | | +--Clostridium hathewayi CAG:224 (1) | | | | | | | | | | | +--Clostridium bolteae CAG:59 (1) | | | | | | | | | | | +--Clostridium magnum DSM 2767 (2) | | | | | | | | | | | +--Clostridium sp. CAG:964 (1) | | | | | | | | | | | +--Clostridium tetanomorphum DSM 665 (10) | | | | | | | | | +--Geosporobacter ferrireducens (2) | | | | | | | | | +--Caldisalinibacter kiritimatiensis (3) | | | | | | | | | +--Paramaledivibacter (3) | | | | | | | | | | | +--Paramaledivibacter caminithermalis DSM 15212 (3) | | | | | | | | | +--Lactonifactor (8) | | | | | | | | | | | +--Lactonifactor longoviformis DSM 17459 (8) | | | | | | | | | +--Fervidicella (2) | | | | | | | | | | | +--Fervidicella metallireducens AeB (2) | | | | | | | | | +--Geosporobacter (3) | | | | | | | | | | | +--Geosporobacter subterraneus DSM 17957 (3) | | | | | | | | | +--Clostridium sp. HMP27 (1) | | | | | | | | | +--Clostridium tepidum (3) | | | | | | | | | +--Clostridium sp. FS41 (2) | | | | | | | | | +--Clostridiaceae bacterium BRH_c20a (2) | | | | | | | +--Lachnospiraceae (73) | | | | | | | | | +--Blautia sp. An249 (1) | | | | | | | | | +--Roseburia sp. 499 (3) | | | | | | | | | +--Blautia sp. YL58 (4) | | | | | | | | | +--Lachnospiraceae bacterium M18-1 (3) | | | | | | | | | +--Lachnoclostridium sp. An131 (2) | | | | | | | | | +--Anaerobium acetethylicum (1) | | | | | | | | | +--Dorea (1) | | | | | | | | | | | +--Dorea sp. CAG:317 (1) | | | | | | | | | +--Lachnospiraceae bacterium 3-2 (1) | | | | | | | | | +--Anaerocolumna (1) | | | | | | | | | | | +--Anaerocolumna jejuensis DSM 15929 (1) | | | | | | | | | +--Pseudobutyrivibrio (1) | | | | | | | | | | | +--Pseudobutyrivibrio xylanivorans DSM 14809 (1) | | | | | | | | | +--Lachnobacterium (1) | | | | | | | | | | | +--Lachnobacterium bovis DSM 14045 (1) | | | | | | | | | +--Roseburia (2) | | | | | | | | | | | +--Roseburia sp. CAG:50 (1) | | | | | | | | | | | +--Roseburia sp. CAG:18 (1) | | | | | | | | | +--Lachnospiraceae bacterium TWA4 (1) | | | | | | | | | +--Lachnospiraceae bacterium CAG:215 (1) | | | | | | | | | +--Butyrivibrio (1) | | | | | | | | | | | +--Butyrivibrio crossotus CAG:259 (1) | | | | | | | | | +--Anaerosporobacter (5) | | | | | | | | | | | +--Anaerosporobacter mobilis DSM 15930 (5) | | | | | | | | | +--Parasporobacterium (5) | | | | | | | | | | | +--Parasporobacterium paucivorans DSM 15970 (5) | | | | | | | | | +--Anaerostipes sp. 992a (18) | | | | | | | | | +--Lachnoclostridium sp. An14 (2) | | | | | | | | | +--Lachnoclostridium sp. An169 (1) | | | | | | | | | +--Roseburia sp. 831b (4) | | | | | | | | | +--Robinsoniella sp. RHS (1) | | | | | | | | | +--Herbinix luporum (1) | | | | | | | | | +--Blautia (3) | | | | | | | | | | | +--Blautia sp. CAG:257 (1) | | | | | | | | | | | +--Blautia sp. CAG:37 (1) | | | | | | | | | | | +--Blautia hydrogenotrophica CAG:147 (1) | | | | | | | | | +--Lachnoclostridium sp. YL32 (9) | | | | | | | +--Clostridialesincertaesedis (9) | | | | | | | | | +--ClostridialesFamilyXVI.IncertaeSedis (5) | | | | | | | | | | | +--Carboxydocella (5) | | | | | | | | | | | +--Carboxydocella sporoproducens DSM 16521 (5) | | | | | | | | | +--ClostridialesFamilyXIII.IncertaeSedis (4) | | | | | | | | | +--Eubacterium infirmum F0142 (1) | | | | | | | | | +--Eubacterium nodatum ATCC 33099 (3) | | | | | | | +--Peptococcaceae (63) | | | | | | | | | +--Desulfotomaculum sp. 46_80 (3) | | | | | | | | | +--Desulfitobacterium (3) | | | | | | | | | | | +--Desulfitobacterium dichloroeliminans LMG P-21439 (3) | | | | | | | | | +--Desulfotomaculum sp. 46_296 (4) | | | | | | | | | +--Desulfonispora (1) | | | | | | | | | | | +--Desulfonispora thiosulfatigenes DSM 11270 (1) | | | | | | | | | +--Desulfotomaculum (15) | | | | | | | | | | | +--Desulfotomaculum putei DSM 12395 (3) | | | | | | | | | | | +--Desulfotomaculum hydrothermale Lam5 = DSM 18033 (3) | | | | | | | | | | | +--Desulfotomaculum australicum DSM 11792 (5) | | | | | | | | | | | +--Desulfotomaculum aeronauticum DSM 10349 (4) | | | | | | | | | +--Dehalobacter sp. CF (6) | | | | | | | | | +--Desulfotomaculum copahuensis (1) | | | | | | | | | +--Desulfosporosinus sp. OL (3) | | | | | | | | | +--Desulfosporosinus sp. BRH_c37 (2) | | | | | | | | | +--Desulfosporosinus sp. Tol-M (1) | | | | | | | | | +--Peptococcaceae bacterium BRH_c8a (4) | | | | | | | | | +--Desulfotomaculum ferrireducens (13) | | | | | | | | | +--Peptococcaceae bacterium BRH_c4a (1) | | | | | | | | | +--Peptococcaceae bacterium SCADC1_2_3 (1) | | | | | | | | | +--Peptococcaceae bacterium BRH_c23 (5) | | | | | | | +--unclassifiedClostridiales (17) | | | | | | | | | +--Clostridiales bacterium 41_21_two_genomes (2) | | | | | | | | | +--Proteiniborus sp. DW1 (3) | | | | | | | | | +--Clostridiales bacterium PH28_bin88 (1) | | | | | | | | | +--Clostridiales bacterium 45_37 (1) | | | | | | | | | +--Clostridiales bacterium KLE1615 (1) | | | | | | | | | +--Clostridiales bacterium 36_14 (2) | | | | | | | | | +--Clostridiales bacterium 38-18 (1) | | | | | | | | | +--Clostridiales bacterium 38_11 (1) | | | | | | | | | +--Clostridiales bacterium CHKCI001 (1) | | | | | | | | | +--Clostridiales bacterium 41_12_two_minus (2) | | | | | | | | | +--Clostridiales bacterium 52_15 (1) | | | | | | | | | +--Clostridiales bacterium GWB2_37_7 (1) | | | | | | | +--Gracilibacteraceae (1) | | | | | | | +--Gracilibacter sp. BRH_c7a (1) | | | | | +--Bacilli (365) | | | | | | | +--Lactobacillales (90) | | | | | | | | | +--Streptococcaceae (21) | | | | | | | | | | | +--Streptococcus (9) | | | | | | | | | | | | | +--Streptococcus sobrinus W1703 (1) | | | | | | | | | | | | | +--Streptococcusdysgalactiaegroup (1) | | | | | | | | | | | | | | | +--Streptococcusdysgalactiae (1) | | | | | | | | | | | | | | | +--Streptococcus dysgalactiae subsp. equisimilis RE378 (1) | | | | | | | | | | | | | +--Streptococcus agalactiae LMG 14747 (3) | | | | | | | | | | | | | +--Streptococcus pneumoniae 2070335 (4) | | | | | | | | | | | +--Streptococcus varani (12) | | | | | | | | | +--Carnobacteriaceae (23) | | | | | | | | | | | +--Atopostipes (3) | | | | | | | | | | | | | +--Atopostipes suicloacalis DSM 15692 (3) | | | | | | | | | | | +--Marinilactibacillus sp. 15R (3) | | | | | | | | | | | +--Carnobacterium (1) | | | | | | | | | | | | | +--Carnobacterium inhibens subsp. gilichinskyi (1) | | | | | | | | | | | +--Dolosigranulum (3) | | | | | | | | | | | | | +--Dolosigranulum pigrum ATCC 51524 (3) | | | | | | | | | | | +--Alloiococcus (11) | | | | | | | | | | | | | +--Alloiococcus otitis ATCC 51267 (11) | | | | | | | | | | | +--Carnobacterium sp. CP1 (2) | | | | | | | | | +--Enterococcaceae (22) | | | | | | | | | | | +--Enterococcus sp. 3H8_DIV0648 (1) | | | | | | | | | | | +--Enterococcus (13) | | | | | | | | | | | | | +--Enterococcus dispar ATCC 51266 (1) | | | | | | | | | | | | | +--Enterococcus cecorum DSM 20682 = ATCC 43198 (2) | | | | | | | | | | | | | +--Enterococcus avium ATCC 14025 (7) | | | | | | | | | | | | | +--Enterococcus pallens ATCC BAA-351 (1) | | | | | | | | | | | | | +--Enterococcus columbae DSM 7374 = ATCC 51263 (2) | | | | | | | | | | | +--Enterococcus sp. 2G9_DIV0600 (1) | | | | | | | | | | | +--Tetragenococcus (3) | | | | | | | | | | | | | +--Tetragenococcus muriaticus 3MR10-3 (3) | | | | | | | | | | | +--Enterococcus sp. 10A9_DIV0425 (4) | | | | | | | | | +--Lactobacillaceae (22) | | | | | | | | | | | +--Lactobacillus (22) | | | | | | | | | | | +--Lactobacillus collinoides DSM 20515 = JCM 1123 (1) | | | | | | | | | | | +--Lactobacillus ghanensis DSM 18630 (1) | | | | | | | | | | | +--Lactobacillus pasteurii DSM 23907 = CRBIP 24.76 (1) | | | | | | | | | | | +--Lactobacillus shenzhenensis LY-73 (1) | | | | | | | | | | | +--Lactobacillus frumenti DSM 13145 (2) | | | | | | | | | | | +--Lactobacillus manihotivorans DSM 13343 = JCM 12514 (1) | | | | | | | | | | | +--Lactobacillus mucosae LM1 (2) | | | | | | | | | | | +--Lactobacillus panis DSM 6035 (2) | | | | | | | | | | | +--Lactobacilluscoryniformis (2) | | | | | | | | | | | | | +--Lactobacillus coryniformis subsp. coryniformis CECT 5711 (2) | | | | | | | | | | | +--Lactobacillus similis DSM 23365 = JCM 2765 (1) | | | | | | | | | | | +--Lactobacillus coleohominis DSM 14060 (1) | | | | | | | | | | | +--Lactobacillus perolens DSM 12744 (1) | | | | | | | | | | | +--Lactobacillus vini DSM 20605 (2) | | | | | | | | | | | +--Lactobacillus farraginis DSM 18382 = JCM 14108 (1) | | | | | | | | | | | +--Lactobacillus composti DSM 18527 = JCM 14202 (3) | | | | | | | | | +--Aerococcaceae (2) | | | | | | | | | +--Globicatella sp. HMSC072A10 (2) | | | | | | | +--Bacillales (273) | | | | | | | | | +--Staphylococcaceae (2) | | | | | | | | | | | +--Staphylococcus sp. HGB0015 (2) | | | | | | | | | +--Planococcaceae (2) | | | | | | | | | | | +--Sporosarcina sp. P33 (1) | | | | | | | | | | | +--Bhargavaea (1) | | | | | | | | | | | +--Bhargavaea cecembensis DSE10 (1) | | | | | | | | | +--Listeriaceae (1) | | | | | | | | | | | +--Listeriaceae bacterium FSL A5-0209 (1) | | | | | | | | | +--Bacillaceae (141) | | | | | | | | | | | +--Bacillus sp. SGD-V-76 (2) | | | | | | | | | | | +--Halobacillus sp. BBL2006 (1) | | | | | | | | | | | +--Bacillus sp. FJAT-27997 (3) | | | | | | | | | | | +--Anaerobacillus sp. NB2006 (2) | | | | | | | | | | | +--Bacillus solimangrovi (1) | | | | | | | | | | | +--Bacillus sp. CHD6a (1) | | | | | | | | | | | +--Bacillus sp. TS-2 (2) | | | | | | | | | | | +--Amphibacillus (2) | | | | | | | | | | | | | +--Amphibacillus xylanus NBRC 15112 (2) | | | | | | | | | | | +--Paraliobacillus sp. PM-2 (2) | | | | | | | | | | | +--Quasibacillus thermotolerans (5) | | | | | | | | | | | +--Lysinibacillus (8) | | | | | | | | | | | | | +--Lysinibacillus manganicus DSM 26584 (1) | | | | | | | | | | | | | +--Lysinibacillus sinduriensis BLB-1 = JCM 15800 (2) | | | | | | | | | | | | | +--Lysinibacillus sphaericus OT4b.31 (3) | | | | | | | | | | | | | +--Lysinibacillus massiliensis 4400831 = CIP 108448 = CCUG 49529 (2) | | | | | | | | | | | +--Anoxybacillus sp. B7M1 (1) | | | | | | | | | | | +--Bacillus sp. FJAT-26390 (1) | | | | | | | | | | | +--Bacillus sp. SJS (1) | | | | | | | | | | | +--Pontibacillus (1) | | | | | | | | | | | | | +--Pontibacillus litoralis JSM 072002 (1) | | | | | | | | | | | +--Gracilibacillus (1) | | | | | | | | | | | | | +--Gracilibacillus halophilus YIM-C55.5 (1) | | | | | | | | | | | +--Bacillus sp. X1(2014) (51) | | | | | | | | | | | +--Bacillus sp. LL01 (2) | | | | | | | | | | | +--Salimicrobium jeotgali (2) | | | | | | | | | | | +--Virgibacillus sp. LM2416 (2) | | | | | | | | | | | +--Bacillus sp. OV166 (1) | | | | | | | | | | | +--Lentibacillus amyloliquefaciens (1) | | | | | | | | | | | +--Bacillus sp. FJAT-27916 (8) | | | | | | | | | | | +--Fictibacillus (1) | | | | | | | | | | | | | +--Fictibacillus macauensis ZFHKF-1 (1) | | | | | | | | | | | +--Bacillus sp. FJAT-27986 (1) | | | | | | | | | | | +--Bacillus sp. VT-16-64 (4) | | | | | | | | | | | +--Anoxybacillus sp. BCO1 (3) | | | | | | | | | | | +--Bacillus sp. FJAT-25509 (1) | | | | | | | | | | | +--Bacillus sp. FJAT-22058 (1) | | | | | | | | | | | +--Bacillus sp. MUM 13 (4) | | | | | | | | | | | +--Tepidibacillus decaturensis (1) | | | | | | | | | | | +--Bacillus (8) | | | | | | | | | | | | | +--Bacillus infantis NRRL B-14911 (1) | | | | | | | | | | | | | +--Bacillus coahuilensis p1.1.43 (1) | | | | | | | | | | | | | +--Bacillus akibai JCM 9157 (1) | | | | | | | | | | | | | +--Bacillus azotoformans LMG 9581 (2) | | | | | | | | | | | | | +--Bacillus wakoensis JCM 9140 (2) | | | | | | | | | | | | | +--Bacillus vireti LMG 21834 (1) | | | | | | | | | | | +--Parageobacillus (3) | | | | | | | | | | | | | +--Parageobacillus caldoxylosilyticus NBRC 107762 (3) | | | | | | | | | | | +--Bacillus enclensis (1) | | | | | | | | | | | +--Bacillus sp. SA1-12 (11) | | | | | | | | | | | +--Geobacillus sp. BCO2 (1) | | | | | | | | | +--Paenibacillaceae (99) | | | | | | | | | | | +--Paenibacillaceae bacterium GAS479 (2) | | | | | | | | | | | +--Paenibacillus sp. Leaf72 (1) | | | | | | | | | | | +--Paenibacillus darwinianus (3) | | | | | | | | | | | +--Paenibacillus ferrarius (1) | | | | | | | | | | | +--Paenibacillus sp. IHBB 10380 (1) | | | | | | | | | | | +--Paenibacillus sp. FSL R5-0912 (2) | | | | | | | | | | | +--Paenibacillus yonginensis (24) | | | | | | | | | | | +--Paenibacillus sp. TCA20 (1) | | | | | | | | | | | +--Paenibacillus aquistagni (1) | | | | | | | | | | | +--Paenibacillus sp. FSL H7-0331 (4) | | | | | | | | | | | +--Paenibacillus sp. Soil787 (3) | | | | | | | | | | | +--Paenibacillus swuensis (2) | | | | | | | | | | | +--Paenibacillus sp. Soil522 (3) | | | | | | | | | | | +--Paenibacillus sp. 32O-W (4) | | | | | | | | | | | +--Paenibacillus sp. VKM B-2647 (1) | | | | | | | | | | | +--Paenibacillus (8) | | | | | | | | | | | | | +--Paenibacillus mucilaginosus 3016 (1) | | | | | | | | | | | | | +--Paenibacillus popilliae ATCC 14706 (1) | | | | | | | | | | | | | +--Paenibacillus uliginis N3/975 (3) | | | | | | | | | | | | | +--Paenibacillus dendritiformis C454 (1) | | | | | | | | | | | | | +--Paenibacillus sabinae T27 (2) | | | | | | | | | | | +--Paenibacillus sp. FSL H8-0548 (3) | | | | | | | | | | | +--Brevibacillus sp. CF112 (1) | | | | | | | | | | | +--Paenibacillus sp. UNCCL117 (2) | | | | | | | | | | | +--Paenibacillus sp. LPB0068 (1) | | | | | | | | | | | +--Paenibacillus sp. DMB20 (3) | | | | | | | | | | | +--Paenibacillus tyrfis (2) | | | | | | | | | | | +--Paenibacillus sp. FSL H7-0357 (1) | | | | | | | | | | | +--Aneurinibacillusgroup (7) | | | | | | | | | | | | | +--Aneurinibacillus sp. XH2 (7) | | | | | | | | | | | +--Brevibacillus (17) | | | | | | | | | | | | | +--Brevibacillus panacihumi W25 (17) | | | | | | | | | | | +--Cohnella kolymensis (1) | | | | | | | | | +--Alicyclobacillaceae (13) | | | | | | | | | | | +--Alicyclobacillus (3) | | | | | | | | | | | | | +--Alicyclobacillus hesperidum URH17-3-68 (2) | | | | | | | | | | | | | +--Alicyclobacillus acidoterrestris ATCC 49025 (1) | | | | | | | | | | | +--Alicyclobacillus sp. USBA-503 (8) | | | | | | | | | | | +--Tumebacillus flagellatus (2) | | | | | | | | | +--unclassifiedBacillales (1) | | | | | | | | | | | +--Acidibacillus ferrooxidans (1) | | | | | | | | | +--Thermoactinomycetaceae (14) | | | | | | | | | +--Thermoactinomyces sp. DSM 45891 (5) | | | | | | | | | +--Novibacillus thermophilus (9) | | | | | | | +--unclassifiedBacilli (2) | | | | | | | +--Bacilli bacterium VT-13-104 (2) | | | | | +--Firmicutes bacterium CAG:137 (2) | | | | | +--Firmicutes bacterium CAG:345 (1) | | | | | +--Negativicutes (19) | | | | | | | +--Selenomonadales (15) | | | | | | | | | +--Selenomonadaceae (1) | | | | | | | | | | | +--Anaerovibrio sp. JC8 (1) | | | | | | | | | +--Sporomusaceae (14) | | | | | | | | | +--Anaerosporomusa subterranea (3) | | | | | | | | | +--Pelosinus (3) | | | | | | | | | | | +--Pelosinus fermentans B4 (3) | | | | | | | | | +--Sporomusa (8) | | | | | | | | | +--Sporomusa sphaeroides DSM 2875 (8) | | | | | | | +--Veillonellales (4) | | | | | | | +--Veillonellaceae (4) | | | | | | | +--Dialister (3) | | | | | | | | | +--Dialister succinatiphilus YIT 11850 (3) | | | | | | | +--Megasphaera (1) | | | | | | | +--Megasphaera cerevisiae DSM 20462 (1) | | | | | +--Firmicutes bacterium CAG:129 (1) | | | | | +--Firmicutes bacterium CAG:95 (1) | | | | | +--Tissierellia (16) | | | | | | | +--Tissierellales (13) | | | | | | | | | +--Sporanaerobacter sp. PP17-6a (1) | | | | | | | | | +--Tissierellaceae (9) | | | | | | | | | | | +--Tissierella (9) | | | | | | | | | | | +--Tissierella praeacuta DSM 18095 (9) | | | | | | | | | +--Peptoniphilaceae (3) | | | | | | | | | +--Anaerosphaera sp. HMSC064C01 (1) | | | | | | | | | +--Helcococcus (1) | | | | | | | | | | | +--Helcococcus kunzii ATCC 51366 (1) | | | | | | | | | +--Peptoniphilus grossensis (1) | | | | | | | +--unclassifiedTissierellia (3) | | | | | | | +--Tissierellia bacterium KA00581 (1) | | | | | | | +--[Clostridium] ultunense Esp (1) | | | | | | | +--Tissierellia bacterium S5-A11 (1) | | | | | +--Firmicutes bacterium CAG:227 (1) | | | +--Nitrospinae/Tectomicrobiagroup (6) | | | | | +--Nitrospinae (5) | | | | | | | +--Nitrospinae bacterium RIFCSPLOWO2_12_FULL_45_22 (2) | | | | | | | +--Nitrospinia (3) | | | | | | | +--Nitrospinales (3) | | | | | | | +--Nitrospinaceae (3) | | | | | | | +--Nitrospina sp. SCGC_AAA799_A02 (2) | | | | | | | +--Nitrospina sp. SCGC_AAA799_C22 (1) | | | | | +--CandidatusTectomicrobia (1) | | | | | +--Candidatus Entotheonella sp. TSY1 (1) | | | +--FCBgroup (177) | | | +--Marinimicrobia bacterium 46_43 (1) | | | +--Fibrobacteres (1) | | | | | +--Chitinivibrionia (1) | | | | | +--Chitinivibrionales (1) | | | | | +--Chitinivibrionaceae (1) | | | | | +--Chitinivibrio (1) | | | | | +--Chitinivibrio alkaliphilus ACht1 (1) | | | +--Bacteroidetes/Chlorobigroup (174) | | | | | +--Ignavibacteriae (2) | | | | | | | +--Ignavibacteria (2) | | | | | | | +--Ignavibacteria bacterium RIFOXYC2_FULL_35_21 (1) | | | | | | | +--Ignavibacteria bacterium RBG_16_35_7 (1) | | | | | +--Bacteroidetes (172) | | | | | +--Chitinophagia (5) | | | | | | | +--Chitinophagales (5) | | | | | | | +--Chitinophagaceae (5) | | | | | | | +--Niastella vici (3) | | | | | | | +--Niastella (1) | | | | | | | | | +--Niastella koreensis GR20-10 (1) | | | | | | | +--Cnuella takakiae (1) | | | | | +--Sphingobacteriia (11) | | | | | | | +--Sphingobacteriales (11) | | | | | | | +--Sphingobacteriaceae (6) | | | | | | | | | +--Pedobacter (1) | | | | | | | | | | | +--Pedobacter antarcticus 4BY (1) | | | | | | | | | +--Pedobacter glucosidilyticus (1) | | | | | | | | | +--Sphingobacterium (1) | | | | | | | | | | | +--Sphingobacterium paucimobilis HER1398 (1) | | | | | | | | | +--Sphingobacterium sp. JB170 (3) | | | | | | | +--unclassifiedSphingobacteriales (5) | | | | | | | +--Sphingobacteriales bacterium 40-81 (1) | | | | | | | +--Sphingobacteriales bacterium 41-5 (1) | | | | | | | +--Sphingobacteriales bacterium 50-39 (3) | | | | | +--Bacteroidia (93) | | | | | | | +--Bacteroidia bacterium 44-10 (4) | | | | | | | +--Bacteroidales (60) | | | | | | | | | +--Paludibacteraceae (1) | | | | | | | | | | | +--Paludibacter sp. 47-17 (1) | | | | | | | | | +--Porphyromonadaceae (26) | | | | | | | | | | | +--Macellibacteroides sp. HH-ZS (2) | | | | | | | | | | | +--Petrimonas mucosa (21) | | | | | | | | | | | +--Porphyromonas sp. HMSC065F10 (2) | | | | | | | | | | | +--Barnesiella (1) | | | | | | | | | | | +--Barnesiella viscericola DSM 18177 (1) | | | | | | | | | +--unclassifiedBacteroidales (5) | | | | | | | | | | | +--Bacteroidales bacterium KA00251 (2) | | | | | | | | | | | +--Bacteroidales bacterium Barb7 (1) | | | | | | | | | | | +--Bacteroidales bacterium 36-12 (2) | | | | | | | | | +--Bacteroidaceae (13) | | | | | | | | | | | +--Bacteroides (13) | | | | | | | | | | | +--Bacteroides sp. CAG:462 (2) | | | | | | | | | | | +--Bacteroides plebeius CAG:211 (1) | | | | | | | | | | | +--Bacteroides sp. CAG:714 (2) | | | | | | | | | | | +--Bacteroides cellulosilyticus CAG:158 (1) | | | | | | | | | | | +--Bacteroides sp. CAG:702 (1) | | | | | | | | | | | +--Bacteroides sp. CAG:545 (1) | | | | | | | | | | | +--Bacteroides oleiciplenus YIT 12058 (2) | | | | | | | | | | | +--Bacteroides sp. CAG:530 (2) | | | | | | | | | | | +--Bacteroides nordii CL02T12C05 (1) | | | | | | | | | +--Dysgonamonadaceae (1) | | | | | | | | | | | +--Proteiniphilum saccharofermentans (1) | | | | | | | | | +--Prevotellaceae (14) | | | | | | | | | +--Alloprevotella (1) | | | | | | | | | | | +--Prevotella sp. oral taxon 473 str. F0040 (1) | | | | | | | | | +--Prevotella (13) | | | | | | | | | +--Prevotella sp. CAG:592 (1) | | | | | | | | | +--Prevotella copri CAG:164 (1) | | | | | | | | | +--Prevotella sp. CAG:891 (1) | | | | | | | | | +--Prevotella salivae F0493 (1) | | | | | | | | | +--Prevotella sp. CAG:520 (2) | | | | | | | | | +--Prevotella sp. CAG:5226 (3) | | | | | | | | | +--Prevotella sp. CAG:386 (1) | | | | | | | | | +--Prevotella sp. CAG:1058 (1) | | | | | | | | | +--Prevotella sp. CAG:279 (2) | | | | | | | +--Marinilabiliales (29) | | | | | | | +--Prolixibacteraceae (10) | | | | | | | | | +--Tangfeifania diversioriginum (1) | | | | | | | | | +--Draconibacterium orientale (9) | | | | | | | +--Salinivirgaceae (11) | | | | | | | | | +--Salinivirga cyanobacteriivorans (11) | | | | | | | +--Marinilabiliaceae (8) | | | | | | | +--Geofilum (1) | | | | | | | | | +--Geofilum rubicundum JCM 15548 (1) | | | | | | | +--Saccharicrinis (7) | | | | | | | +--Saccharicrinis fermentans DSM 9555 = JCM 21142 (7) | | | | | +--Flavobacteriia (26) | | | | | | | +--Flavobacteriales (26) | | | | | | | +--Flavobacteriaceae (26) | | | | | | | +--Flavobacteriaceae bacterium CG1_02_35_72 (1) | | | | | | | +--Flavobacteriaceae bacterium CRH (1) | | | | | | | +--Siansivirga (1) | | | | | | | | | +--Siansivirga zeaxanthinifaciens CC-SAMT-1 (1) | | | | | | | +--Zunongwangia (1) | | | | | | | | | +--Zunongwangia atlantica 22II14-10F7 (1) | | | | | | | +--Flavobacteriaceae bacterium CG2_30_34_30 (1) | | | | | | | +--Leeuwenhoekiella (6) | | | | | | | | | +--Leeuwenhoekiella marinoflava DSM 3653 (6) | | | | | | | +--Maribacter sp. T28 (1) | | | | | | | +--Algibacter sp. SK-16 (2) | | | | | | | +--Chryseobacterium (1) | | | | | | | | | +--Chryseobacterium haifense DSM 19056 (1) | | | | | | | +--Arenibacter sp. C-21 (8) | | | | | | | +--Gillisia (2) | | | | | | | | | +--Gillisia limnaea DSM 15749 (2) | | | | | | | +--Flavobacterium sp. TAB 87 (1) | | | | | +--unclassifiedBacteroidetes (11) | | | | | | | +--Bacteroidetes bacterium GWF2_42_66 (1) | | | | | | | +--Bacteroidetes bacterium GWF2_33_38 (1) | | | | | | | +--Bacteroidetes bacterium GWA2_30_7 (1) | | | | | | | +--Bacteroidetes bacterium 38_7 (1) | | | | | | | +--Bacteroidetes bacterium GWA2_31_9 (1) | | | | | | | +--Bacteroidetes bacterium RIFCSPHIGHO2_02_FULL_44_7 (1) | | | | | | | +--Bacteroidetes bacterium 4484_276 (1) | | | | | | | +--Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_37_12 (2) | | | | | | | +--Bacteroidetes bacterium GWD2_45_23 (1) | | | | | | | +--Bacteroidetes bacterium GWF2_40_14 (1) | | | | | +--Cytophagia (22) | | | | | | | +--Cytophagales (22) | | | | | | | +--Cyclobacteriaceae (15) | | | | | | | | | +--Nitritalea (1) | | | | | | | | | | | +--Nitritalea halalkaliphila LW7 (1) | | | | | | | | | +--Indibacter (1) | | | | | | | | | | | +--Indibacter alkaliphilus LW1 (1) | | | | | | | | | +--Echinicola (3) | | | | | | | | | | | +--Echinicola vietnamensis DSM 17526 (3) | | | | | | | | | +--Belliella (6) | | | | | | | | | | | +--Belliella baltica DSM 15883 (6) | | | | | | | | | +--Cecembia (2) | | | | | | | | | | | +--Cecembia lonarensis LW9 (2) | | | | | | | | | +--Lunatimonas lonarensis (2) | | | | | | | +--Hymenobacteraceae (2) | | | | | | | | | +--Pontibacter ummariensis (1) | | | | | | | | | +--Pontibacter sp. BAB1700 (1) | | | | | | | +--Flammeovirgaceae (5) | | | | | | | +--Flammeovirga sp. SJP92 (4) | | | | | | | +--Fulvivirga (1) | | | | | | | +--Fulvivirga imtechensis AK7 (1) | | | | | +--Saprospiria (4) | | | | | +--Saprospirales (4) | | | | | +--Haliscomenobacteraceae (4) | | | | | +--Phaeodactylibacter xiamenensis (4) | | | +--Gemmatimonadetes (1) | | | +--Gemmatimonadetes bacterium RBG_16_66_8 (1) | +--Archaea (9) | +--Euryarchaeota (9) | +--Methanomicrobia (2) | | | +--Methanosarcinales (2) | | | +--Methanosarcinaceae (2) | | | +--Methanosarcina sp. Ant1 (2) | +--unclassifiedEuryarchaeota (5) | | | +--candidate divison MSBL1 archaeon SCGC-AAA382M17 (1) | | | +--Euryarchaeota archaeon RBG_13_31_8 (1) | | | +--CandidatusAltiarchaeales (3) | | | +--Candidatus Altiarchaeales archaeon WOR_SM1_86-2 (2) | | | +--Candidatus Altiarchaeales archaeon IMC4 (1) | +--Thermoplasmata (2) | +--methanogenic archaeon ISO4-H5 (1) | +--Methanomassiliicoccales (1) | +--Methanomassiliicoccaceae (1) | +--CandidatusMethanomethylophilus (1) | +--Candidatus Methanomethylophilus alvus Mx1201 (1)