INFERNAL1/a [1.1 | October 2013] NAME vapC_target DESC vapC ribonuclease target STATES 160 NODES 42 CLEN 52 W 279 ALPH RNA RF no CONS yes MAP yes DATE Fri May 30 16:43:13 2014 COM [1] /share/data/bin/cmbuild -F /share/data/people/ppg15/motifs/vapC_target/CM /share/data/people/ppg15/motifs/vapC_target/SEED COM [2] /share/data/bin/cmcalibrate --mpi --seed 1 /share/data/people/ppg15/motifs/vapC_target/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 38 EFFN 38.000000 CKSUM 148743250 NULL 0.000 0.000 0.000 0.000 GA 13.00 EFP7GF -0.8842 0.74893 ECMLC 0.59736 -7.85757 2.96729 1600000 771709 0.001555 ECMGC 0.43312 -10.03204 2.81347 1600000 104312 0.003835 ECMLI 0.50607 -6.37227 5.56971 1600000 505639 0.002373 ECMGI 0.46679 -4.35549 6.82697 1600000 73964 0.005408 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 279 544 -10.439 -10.646 -0.005 -9.060 IL 1 1 2 1 4 1 15 281 546 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 15 281 546 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 1 15 279 545 -11.358 -0.002 -10.012 1.992 -7.483 -6.786 -6.938 D 4 2 3 5 3 0 10 277 542 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 14 280 545 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 14 278 544 -11.358 -0.002 -10.012 -7.167 -6.476 -8.117 1.992 D 7 5 3 8 3 0 9 276 541 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 13 279 544 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - A - - - ML 9 8 3 11 3 1 13 277 543 -11.358 -0.002 -10.012 1.992 -7.483 -6.786 -6.938 D 10 8 3 11 3 0 9 275 540 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 12 278 543 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 12 276 542 -11.358 -0.121 -3.643 -1.375 -4.469 -5.351 1.826 D 13 11 3 14 3 0 8 274 539 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 12 277 542 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - C - - - ML 15 14 3 17 3 1 13 275 541 -1.016 -0.987 -9.860 -1.295 1.078 -0.407 -0.459 D 16 14 3 17 3 0 7 274 539 -8.126 -0.105 -3.909 IL 17 17 3 17 3 1 12 275 540 -1.884 -0.461 -8.568 0.000 0.000 0.000 0.000 [ MATR 6 ] - 124 - g - - MR 18 17 3 20 3 1 12 274 539 -11.661 -0.002 -9.978 -0.645 -0.299 0.407 0.290 D 19 17 3 20 3 0 4 271 536 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 8 274 539 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 123 - C - - MR 21 20 3 23 3 1 11 273 538 -11.661 -0.002 -9.978 -1.905 1.368 -0.474 -1.212 D 22 20 3 23 3 0 4 270 535 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 7 273 538 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 122 - u - - MR 24 23 3 26 3 1 11 272 537 -11.661 -0.002 -9.978 -0.378 0.232 -0.931 0.615 D 25 23 3 26 3 0 3 269 534 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 7 272 537 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 121 - c - - MR 27 26 3 29 3 1 10 271 536 -11.661 -0.002 -9.978 -0.713 0.499 0.209 -0.285 D 28 26 3 29 3 0 3 268 534 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 6 271 536 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 120 - G - - MR 30 29 3 32 5 1 9 270 535 -10.311 -0.053 -10.126 -4.878 -11.230 -5.430 -2.193 1.904 -6.051 D 31 29 3 32 5 0 2 268 533 -5.352 -0.707 -2.978 -4.409 -2.404 IR 32 32 3 32 5 1 5 270 535 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 8 119 u a - - MP 33 32 3 37 6 2 8 269 534 -11.359 -11.299 -0.004 -10.075 -10.355 -10.750 -3.050 -3.252 -3.243 -0.324 -0.453 0.997 1.117 1.127 -3.305 0.898 -3.877 -1.901 1.270 -1.622 0.991 -0.387 ML 34 32 3 37 6 1 4 267 532 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 3 37 6 1 5 267 532 -8.411 -7.140 -0.419 -7.118 -2.252 -5.332 0.700 0.004 -0.944 -0.230 D 36 32 3 37 6 0 0 262 528 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 5 268 533 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 5 268 533 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 9 118 g c - - MP 39 38 6 43 6 2 6 267 532 -11.403 -11.342 -0.004 -10.119 -10.398 -10.793 -5.520 -0.381 -5.344 0.397 -6.427 -5.947 0.807 -6.015 -5.768 2.933 -6.022 0.937 -1.783 -5.206 1.084 -4.306 ML 40 38 6 43 6 1 3 265 530 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 3 265 530 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 0 261 527 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 5 266 531 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 5 266 531 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 10 117 c g - - MP 45 44 6 49 6 2 5 265 530 -11.403 -11.342 -0.004 -10.119 -10.398 -10.793 -5.822 -5.486 -5.829 2.248 -4.769 -6.692 2.857 -5.392 -5.695 0.317 -6.209 -1.009 0.870 -6.027 -2.242 -4.436 ML 46 44 6 49 6 1 3 263 529 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 2 263 528 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 0 261 526 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 3 264 529 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 3 264 529 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 116 a u - - MP 51 50 6 55 4 2 3 263 528 -10.439 -10.646 -0.505 -1.767 -3.464 -1.646 -3.631 2.428 -1.816 -4.464 1.613 -3.970 0.698 1.324 -4.266 -1.935 -0.406 0.070 -1.771 -2.852 ML 52 50 6 55 4 1 2 262 528 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 1 261 527 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 54 50 6 55 4 0 0 260 525 -4.568 -4.250 -2.265 -0.520 IL 55 55 5 55 4 1 3 263 528 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 3 263 528 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 12 - c - - - ML 57 56 6 59 3 1 2 261 527 -1.824 -0.815 -2.747 -1.093 0.739 -0.511 0.215 D 58 56 6 59 3 0 0 259 525 -9.802 -3.016 -0.192 IL 59 59 3 59 3 1 1 261 526 -2.511 -1.166 -1.399 0.000 0.000 0.000 0.000 [ MATR 16 ] - 115 - u - - MR 60 59 3 62 3 1 4 260 526 -10.754 -0.004 -9.072 0.057 -1.102 0.102 0.507 D 61 59 3 62 3 0 0 259 524 -11.692 -0.275 -2.527 IR 62 62 3 62 3 1 1 261 526 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 114 - a - - MR 63 62 3 65 5 1 3 259 525 -10.199 -0.004 -10.014 -10.226 -11.118 0.991 -0.582 0.044 -1.674 D 64 62 3 65 5 0 0 258 523 -7.513 -0.131 -5.139 -6.570 -4.564 IR 65 65 3 65 5 1 1 259 524 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 113 G C - - MP 66 65 3 70 6 2 3 258 524 -11.403 -11.342 -0.004 -10.119 -10.398 -10.793 -5.521 -0.301 -5.346 0.113 -6.356 -5.948 1.339 -5.994 -5.763 3.177 -6.019 -0.326 0.530 -5.209 -3.470 -4.302 ML 67 65 3 70 6 1 1 256 521 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 3 70 6 1 1 255 521 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 3 70 6 0 0 253 518 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 257 523 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 257 523 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 112 C G - - MP 72 71 6 76 4 2 2 256 522 -1.383 -4.157 -1.272 -2.773 -8.248 -8.511 -7.577 -4.733 -5.935 -7.730 3.470 -6.847 -7.677 -4.698 -7.803 -6.873 2.230 -8.090 -3.635 -6.478 ML 73 71 6 76 4 1 1 254 520 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 253 518 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 252 517 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 1 256 522 -2.864 -0.250 -5.618 -9.355 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 255 520 -1.279 -0.774 -8.401 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - c - - - ML 78 77 6 80 5 1 2 254 519 -10.091 -0.005 -9.906 -10.118 -11.010 -1.314 0.572 0.111 0.044 D 79 77 6 80 5 0 0 251 516 -8.104 -2.150 -7.365 -5.740 -0.422 IL 80 80 3 80 5 1 1 254 519 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 20 108 g c - - MP 81 80 3 85 6 2 2 253 518 -11.245 -11.185 -0.005 -9.961 -10.241 -10.636 -4.241 1.661 -4.296 0.793 -1.668 0.612 -0.074 -4.766 -4.500 2.037 -4.952 -0.612 -1.011 1.188 -1.093 -3.430 ML 82 80 3 85 6 1 1 250 516 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 250 515 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 250 515 -12.310 -11.009 -0.145 -7.488 -7.505 -3.581 IL 85 85 5 85 6 1 1 252 517 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 251 517 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 21 107 G C - - MP 87 86 6 91 6 2 2 251 516 -11.403 -11.342 -0.204 -10.119 -10.398 -2.948 -5.768 -4.738 -5.638 0.582 -5.491 -6.293 1.940 -5.782 -5.848 3.050 -6.197 -2.369 -0.061 -5.612 0.006 -4.467 ML 88 86 6 91 6 1 1 249 514 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 249 514 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 244 509 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 250 515 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 250 515 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 22 106 C G - - MP 93 92 6 97 6 2 2 249 514 -4.152 -11.143 -0.088 -9.919 -10.199 -10.594 -6.288 -6.068 -6.173 0.261 0.287 -6.838 3.338 -5.649 -6.085 0.867 -6.517 -3.716 -0.890 -6.420 -0.170 -4.827 ML 94 92 6 97 6 1 1 247 513 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 247 513 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 243 508 -12.600 -11.299 -7.096 -7.778 -7.795 -0.025 IL 97 97 5 97 6 1 1 248 513 -4.321 -4.584 -0.189 -6.239 -7.015 -6.675 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 248 513 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 24 105 g c - - MP 99 98 6 103 4 2 2 247 512 -1.932 -11.261 -1.069 -1.939 -5.431 -4.528 -5.343 1.269 -5.064 -6.040 1.539 -5.415 -5.497 2.797 -5.886 -2.172 0.691 -5.343 0.693 -4.155 ML 100 98 6 103 4 1 1 246 511 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 4 1 1 246 511 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 102 98 6 103 4 0 0 243 508 -18.416 -19.686 -7.715 -0.007 IL 103 103 5 103 4 1 1 246 512 -6.009 -7.511 -0.177 -3.401 0.000 0.000 0.000 0.000 IR 104 104 6 104 3 1 1 247 512 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 104 - C - - MR 105 104 6 107 5 1 1 246 511 -3.651 -0.416 -2.748 -9.650 -5.574 -1.835 1.505 -2.686 -0.462 D 106 104 6 107 5 0 0 243 508 -9.574 -0.863 -7.200 -8.631 -1.186 IR 107 107 3 107 5 1 1 247 512 -3.590 -0.198 -7.101 -5.269 -6.374 0.000 0.000 0.000 0.000 [ MATP 26 ] 26 102 G C - - MP 108 107 3 112 6 2 2 246 511 -10.994 -10.934 -0.137 -9.710 -5.358 -3.959 -5.067 -3.879 -4.932 0.820 -5.551 -1.043 0.304 -5.448 -5.281 3.107 -5.583 -1.544 0.696 -4.833 0.686 -3.884 ML 109 107 3 112 6 1 1 236 501 -8.911 -9.257 -3.972 -0.119 -9.107 -6.637 1.876 -3.476 -3.005 -3.131 MR 110 107 3 112 6 1 1 236 501 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 111 107 3 112 6 0 0 239 504 -12.928 -11.626 -7.423 -8.105 -8.123 -0.020 IL 112 112 5 112 6 1 1 245 510 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 113 113 6 113 5 1 1 244 510 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 27 101 C G - - MP 114 113 6 118 4 2 2 244 510 -9.802 -10.009 -0.293 -2.462 -7.569 -7.779 -6.923 -3.982 -5.298 -0.523 3.807 -6.203 -7.015 -0.392 -7.150 -6.045 -1.996 -7.432 -2.996 -5.816 ML 115 113 6 118 4 1 1 234 499 -6.071 -6.253 -1.374 -0.770 -3.064 1.848 -3.865 -2.235 MR 116 113 6 118 4 1 1 223 488 -5.915 -4.944 -2.812 -0.307 1.381 -1.390 -1.117 -0.854 D 117 113 6 118 4 0 0 239 504 -8.700 -8.382 -0.668 -1.453 IL 118 118 5 118 4 1 1 246 511 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 119 119 6 119 3 1 1 245 511 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - G - - - ML 120 119 6 122 3 1 1 245 510 -0.670 -1.433 -9.534 0.365 -5.071 1.403 -4.715 D 121 119 6 122 3 0 0 159 406 -11.002 -0.347 -2.228 IL 122 122 3 122 3 1 1 251 516 -0.100 -5.720 -4.377 0.000 0.000 0.000 0.000 [ MATL 29 ] 56 - a - - - ML 123 122 3 125 3 1 1 156 327 -10.633 -0.003 -9.287 0.524 0.256 0.229 -2.353 D 124 122 3 125 3 0 0 152 322 -11.474 -6.987 -0.012 IL 125 125 3 125 3 1 1 157 327 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 57 - g - - - ML 126 125 3 128 3 1 1 155 326 -10.633 -0.003 -9.287 -0.086 -0.860 0.909 -0.668 D 127 125 3 128 3 0 0 152 322 -11.474 -6.987 -0.012 IL 128 128 3 128 3 1 1 156 327 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 58 - U - - - ML 129 128 3 131 3 1 1 154 325 -10.633 -0.003 -9.287 -0.975 -3.201 -1.790 1.629 D 130 128 3 131 3 0 0 152 322 -11.474 -6.987 -0.012 IL 131 131 3 131 3 1 1 155 326 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 59 - c - - - ML 132 131 3 134 3 1 1 153 324 -10.633 -0.071 -4.393 -1.033 0.474 0.466 -0.433 D 133 131 3 134 3 0 0 151 322 -11.474 -6.987 -0.012 IL 134 134 3 134 3 1 1 154 325 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 60 - A - - - ML 135 134 3 137 3 1 1 152 323 -0.382 -3.668 -2.701 1.102 -2.194 0.635 -3.618 D 136 134 3 137 3 0 0 151 322 -4.324 -0.337 -2.656 IL 137 137 3 137 3 1 1 153 324 -0.407 -2.831 -3.245 0.000 0.000 0.000 0.000 [ MATL 34 ] 69 - a - - - ML 138 137 3 140 3 1 1 153 324 -10.720 -0.049 -4.935 0.444 -0.482 -0.756 0.413 D 139 137 3 140 3 0 0 109 280 -11.333 -6.846 -0.013 IL 140 140 3 140 3 1 1 153 324 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 70 - a - - - ML 141 140 3 143 3 1 1 152 323 -0.492 -2.476 -3.191 0.273 0.020 -0.467 0.076 D 142 140 3 143 3 0 0 81 252 -11.410 -6.923 -0.012 IL 143 143 3 143 3 1 1 155 325 -0.156 -3.297 -10.946 0.000 0.000 0.000 0.000 [ MATL 36 ] 96 - g - - - ML 144 143 3 146 3 1 1 15 34 -10.510 -0.004 -9.164 -1.268 0.035 0.932 -0.615 D 145 143 3 146 3 0 0 13 32 -11.640 -2.692 -0.243 IL 146 146 3 146 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 97 - G - - - ML 147 146 3 149 3 1 1 14 32 -10.675 -0.003 -9.329 -1.386 -0.577 1.092 -0.295 D 148 146 3 149 3 0 0 12 31 -11.410 -4.061 -0.090 IL 149 149 3 149 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 98 - u - - - ML 150 149 3 152 3 1 1 13 31 -10.720 -0.003 -9.374 0.138 -0.367 -0.478 0.492 D 151 149 3 152 3 0 0 11 30 -11.333 -0.923 -1.083 IL 152 152 3 152 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 99 - u - - - ML 153 152 3 155 3 1 1 11 29 -11.095 -0.653 -1.460 -0.126 -0.486 -0.599 0.774 D 154 152 3 155 3 0 0 10 29 -10.278 -5.791 -0.027 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 100 - u - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 -0.816 -0.419 -0.431 0.958 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 41 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [i1.1 | October 2013] NAME vapC_target DESC vapC ribonuclease target LENG 52 MAXL 283 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri May 30 16:43:13 2014 COM [1] /share/data/bin/cmbuild -F /share/data/people/ppg15/motifs/vapC_target/CM /share/data/people/ppg15/motifs/vapC_target/SEED NSEQ 38 EFFN 33.783447 CKSUM 148743250 STATS LOCAL MSV -8.7918 0.74893 STATS LOCAL VITERBI -10.9490 0.74893 STATS LOCAL FORWARD -1.8496 0.74893 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.54152 1.29111 1.27108 1.46772 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 0.00000 * 1 0.00639 6.45478 5.97962 6.08971 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 2 6.16280 5.71125 6.80587 0.00654 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 3 0.00639 6.45478 5.97962 6.08971 3 A - - : 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 4 2.34150 4.36662 4.97452 0.12306 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.08710 5.99645 2.51421 1.46634 0.26236 1.09861 0.40547 5 2.25425 0.64833 1.67394 1.68944 5 C - - : 1.38629 1.38629 1.38629 1.38629 0.69050 0.70123 5.91477 0.32360 1.28568 0.59231 0.80530 6 2.54643 0.83770 1.91202 1.07542 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.00516 5.96246 5.96246 1.46634 0.26236 0.12976 2.10624 7 1.99658 2.18763 0.51568 1.86482 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 8 1.21516 0.79073 2.17575 1.99287 10 c - - < 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 9 1.02072 1.52618 1.29552 1.90688 11 a - - < 1.38629 1.38629 1.38629 1.38629 0.34606 5.99645 1.23773 1.46634 0.26236 1.09861 0.40547 10 2.10924 0.88462 1.74369 1.23469 12 c - - - 1.38629 1.38629 1.38629 1.38629 0.34021 1.25567 5.65740 0.19837 1.71515 0.01701 4.08258 11 2.08430 1.83450 0.48821 2.28092 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 12 5.41853 0.36896 5.36838 1.20581 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.74269 0.96896 1.93315 0.14943 1.97469 1.09861 0.40547 13 2.25518 0.99879 1.31735 1.35102 19 c - - - 1.38629 1.38629 1.38629 1.38629 0.00582 5.84306 5.84306 1.46634 0.26236 1.66805 0.20901 14 1.17634 1.71830 1.20433 1.54961 20 a - - < 1.38629 1.38629 1.38629 1.38629 0.00565 5.87263 5.87263 1.46634 0.26236 0.04097 3.21523 15 2.28946 1.42073 0.63842 2.04782 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.16298 5.99645 1.91119 1.46634 0.26236 1.09861 0.40547 16 2.52282 0.36045 2.09744 2.30623 22 C - - < 1.38629 1.38629 1.38629 1.38629 0.07252 2.70244 5.83931 0.08468 2.51089 4.11835 0.01641 17 1.84595 1.67789 0.80332 1.57255 24 g - - < 1.38629 1.38629 1.38629 1.38629 0.51115 1.34027 1.97747 0.02209 3.82352 0.67546 0.71115 18 1.54922 2.28530 0.69464 1.67884 26 g - - < 1.38629 1.38629 1.38629 1.38629 0.10178 5.79078 2.36747 1.46634 0.26236 4.35328 0.01295 19 4.67790 0.09157 3.07334 3.44398 27 C - - < 1.38629 1.38629 1.38629 1.38629 0.28195 5.69574 1.41745 1.46634 0.26236 0.51551 0.90930 20 1.13534 4.76112 0.41684 4.50983 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.98745 0.47157 5.66857 2.69997 0.06957 0.23420 1.56639 21 1.02725 1.22242 1.23571 2.86713 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.44887 5.93993 1.02438 1.46634 0.26236 3.22250 0.04067 22 1.44117 1.97708 0.76698 1.82968 57 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00821 5.49927 5.49927 1.46634 0.26236 5.07820 0.00625 23 2.05301 3.49471 2.61558 0.26375 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00821 5.49927 5.49927 1.46634 0.26236 5.07820 0.00625 24 2.06296 1.07009 1.07501 1.66786 59 c - - _ 1.38629 1.38629 1.38629 1.38629 0.05502 5.49927 3.00694 1.46634 0.26236 2.82020 0.06144 25 0.62749 2.88124 0.95207 3.72704 60 A - - _ 1.38629 1.38629 1.38629 1.38629 2.49316 0.26320 1.90541 1.31149 0.31391 0.17826 1.81229 26 1.08172 1.71705 1.90265 1.10196 69 a - - _ 1.38629 1.38629 1.38629 1.38629 0.31621 5.83594 1.31612 1.46634 0.26236 4.13701 0.01610 27 1.19710 1.37914 1.70948 1.32736 70 a - - _ 1.38629 1.38629 1.38629 1.38629 1.68808 0.35003 2.20315 2.32618 0.10277 5.03327 0.00654 28 2.21481 1.37264 0.75317 1.79267 96 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00894 5.41512 5.41512 1.46634 0.26236 1.86962 0.16745 29 2.29650 1.78788 0.64038 1.58484 97 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00798 5.52771 5.52771 1.46634 0.26236 2.83743 0.06036 30 1.28723 1.64000 1.71680 1.04883 98 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00774 5.55896 5.55896 1.46634 0.26236 0.63555 0.75426 31 1.46549 1.72060 1.79886 0.85663 99 u - - _ 1.38629 1.38629 1.38629 1.38629 0.45373 5.81589 1.01676 1.46634 0.26236 4.24005 0.01451 32 1.91918 1.67404 1.68861 0.73187 100 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00934 5.37149 5.37149 1.46634 0.26236 1.24904 0.33797 33 3.26551 2.39217 0.15262 4.42821 101 G - - > 1.38629 1.38629 1.38629 1.38629 0.00747 5.59330 5.59330 1.46634 0.26236 1.79383 0.18191 34 2.22685 0.56527 1.70840 1.94650 102 C - - > 1.38629 1.38629 1.38629 1.38629 0.45130 2.64367 1.23065 0.09423 2.40876 0.97972 0.47067 35 2.62664 0.35097 3.22111 1.69409 104 C - - - 1.38629 1.38629 1.38629 1.38629 0.00808 5.51570 5.51570 1.46634 0.26236 0.48852 0.95070 36 2.22022 0.83123 1.25912 1.76026 105 c - - > 1.38629 1.38629 1.38629 1.38629 0.00584 5.83931 5.83931 1.46634 0.26236 4.11835 0.01641 37 2.14689 2.13907 0.38770 2.44448 106 G - - > 1.38629 1.38629 1.38629 1.38629 0.00584 5.83931 5.83931 1.46634 0.26236 0.03308 3.42520 38 2.70423 0.65962 1.19674 2.17285 107 C - - > 1.38629 1.38629 1.38629 1.38629 0.12947 5.99645 2.12905 1.46634 0.26236 1.09861 0.40547 39 2.72020 0.40296 2.27168 1.81607 108 C - - > 1.38629 1.38629 1.38629 1.38629 0.68145 0.71069 5.87263 0.54069 0.87311 0.04097 3.21523 40 1.22199 5.53774 0.36216 5.24933 112 G - - > 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 41 2.36318 0.48763 1.79823 2.06982 113 C - - > 1.38629 1.38629 1.38629 1.38629 0.08337 5.99645 2.55745 1.46634 0.26236 1.09861 0.40547 42 0.70540 1.79012 1.36066 2.49301 114 a - - - 1.38629 1.38629 1.38629 1.38629 0.55832 5.91848 0.85534 1.46634 0.26236 3.50122 0.03062 43 1.34140 2.12777 1.32508 1.03949 115 u - - - 1.38629 1.38629 1.38629 1.38629 0.00936 5.36951 5.36951 1.46634 0.26236 0.01057 4.55515 44 1.73355 1.42263 1.50422 1.02144 116 u - - > 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 45 2.09236 2.48087 0.76658 1.11372 117 g - - > 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 46 3.64473 0.64579 1.42308 1.56710 118 C - - > 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 47 1.52230 1.33122 1.32065 1.38360 119 g - - > 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 48 4.98977 2.91734 0.06756 5.41557 120 G - - : 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 49 1.86120 1.04872 1.24908 1.57329 121 c - - : 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 50 1.63726 1.23121 2.02428 0.96375 122 u - - : 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 51 2.67340 0.44451 1.72260 2.19605 123 C - - : 1.38629 1.38629 1.38629 1.38629 0.00499 5.99645 5.99645 1.46634 0.26236 1.09861 0.40547 52 1.81418 1.59484 1.11304 1.18572 124 g - - : 1.38629 1.38629 1.38629 1.38629 0.00250 5.99396 * 1.46634 0.26236 0.00000 * //