INFERNAL1/a [1.1 | October 2013] NAME SRP_S_domain DESC Signal recognition particle small S-domain STATES 142 NODES 29 CLEN 46 W 65 ALPH RNA RF no CONS yes MAP yes DATE Fri May 30 16:15:04 2014 COM [1] /share/data/bin/cmbuild -F /share/data/people/ppg15/motifs/SRP_S_domain/CM /share/data/people/ppg15/motifs/SRP_S_domain/SEED COM [2] /share/data/bin/cmcalibrate --mpi --seed 1 /share/data/people/ppg15/motifs/SRP_S_domain/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 216 EFFN 216.000000 CKSUM 1225300815 NULL 0.000 0.000 0.000 0.000 GA 20.00 EFP7GF -12.4244 0.74230 ECMLC 0.71919 -3.57929 4.00279 1600000 280134 0.004284 ECMGC 0.55801 -14.33890 -2.22324 1600000 345284 0.001158 ECMLI 0.77143 -1.69756 5.07794 1600000 223435 0.005371 ECMGI 0.64254 -10.89039 -0.58244 1600000 300977 0.001329 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 1 1 65 90 -13.704 -13.644 -0.289 -4.512 -3.269 -4.890 IL 1 1 2 1 6 1 1 67 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 1 67 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 54 a c - - MP 3 2 3 7 6 2 8 65 90 -4.156 -13.356 -0.084 -12.132 -12.412 -12.807 0.259 1.395 -0.180 0.051 -2.509 -0.611 0.611 -1.114 -1.762 -0.969 -5.499 -0.052 1.365 0.365 0.219 -0.705 ML 4 2 3 7 6 1 3 64 88 -10.161 -10.507 -1.042 -0.977 -10.357 -7.887 1.656 -2.797 -2.950 -0.797 MR 5 2 3 7 6 1 1 68 93 -11.893 -1.280 -1.408 -2.812 -4.440 -5.469 -1.006 -0.101 1.057 -1.034 D 6 2 3 7 6 0 0 58 83 -12.933 -11.631 -7.428 -8.111 -8.128 -0.020 IL 7 7 5 7 6 1 5 65 90 -6.151 -6.414 -0.051 -8.070 -8.846 -8.506 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 5 68 94 -1.067 -0.957 -9.696 -7.864 -8.970 0.000 0.000 0.000 0.000 [ MATP 2 ] 3 51 g c - - MP 9 8 6 13 6 2 7 63 88 -13.590 -13.529 -0.031 -6.853 -6.374 -12.981 -1.791 -2.808 -3.688 0.474 -0.144 -4.052 1.513 -0.653 -5.089 2.578 -3.166 -0.081 0.524 -3.315 -0.429 -1.696 ML 10 8 6 13 6 1 3 61 86 -9.954 -10.300 -1.532 -0.629 -10.150 -7.679 0.978 -0.274 -1.113 -0.431 MR 11 8 6 13 6 1 1 61 86 -7.849 -6.578 -2.487 -6.556 -0.397 -4.770 -0.382 -1.363 1.173 -0.763 D 12 8 6 13 6 0 0 56 80 -13.018 -11.716 -7.513 -8.195 -8.213 -0.018 IL 13 13 5 13 6 1 1 63 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 1 63 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 4 50 g c - - MP 15 14 6 19 6 2 5 61 86 -13.581 -13.520 -0.006 -12.296 -12.576 -8.077 -4.823 -3.368 -2.792 0.916 -2.772 -5.873 2.018 -2.984 -1.210 2.345 -5.662 0.014 1.007 -3.057 -1.680 -0.967 ML 16 14 6 19 6 1 3 60 84 -9.766 -10.112 -1.973 -0.441 -9.962 -7.491 -0.282 1.427 -2.919 -1.489 MR 17 14 6 19 6 1 2 60 84 -9.277 -8.006 -1.029 -7.984 -1.039 -6.198 0.199 0.363 -0.363 -0.343 D 18 14 6 19 6 0 0 55 79 -13.018 -11.716 -7.513 -8.195 -8.213 -0.018 IL 19 19 5 19 6 1 1 61 85 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 1 61 85 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 5 49 c g - - MP 21 20 6 25 6 2 5 59 84 -13.599 -13.539 -0.001 -12.315 -12.595 -12.990 -7.807 -7.162 -7.763 1.847 -7.012 -8.533 2.077 -7.542 -7.766 2.021 -8.221 -0.002 1.384 -7.845 -2.112 -2.043 ML 22 20 6 25 6 1 2 58 83 -9.408 -9.754 -4.469 -0.083 -9.604 -7.134 -3.256 -2.977 -4.040 1.890 MR 23 20 6 25 6 1 1 58 83 -8.482 -7.211 -0.396 -7.189 -2.323 -5.403 0.615 -0.779 -0.947 0.450 D 24 20 6 25 6 0 0 54 79 -13.137 -11.835 -3.570 -8.314 -8.332 -0.137 IL 25 25 5 25 6 1 1 59 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 1 59 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 48 g c - - MP 27 26 6 31 6 2 4 57 82 -13.614 -13.554 -0.037 -5.312 -12.610 -13.005 -7.612 -6.262 -7.433 1.553 -8.496 -8.032 1.135 -8.101 -7.863 2.921 -4.130 0.819 0.337 -7.291 -3.249 -4.045 ML 28 26 6 31 6 1 2 57 82 -0.319 -9.754 -4.469 -2.800 -9.604 -7.134 -1.409 1.685 -3.242 -1.728 MR 29 26 6 31 6 1 1 56 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 0 53 77 -13.018 -11.716 -3.846 -8.195 -8.213 -0.115 IL 31 31 5 31 6 1 2 56 81 -5.229 -5.492 -0.097 -7.147 -7.923 -7.583 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 1 57 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 8 47 c g - - MP 33 32 6 37 6 2 3 55 80 -13.616 -13.555 -0.260 -2.632 -12.612 -8.337 -7.883 -7.531 -7.880 0.855 -1.404 -8.710 2.133 -7.454 -7.766 2.131 -8.271 -2.674 -0.544 -8.044 1.966 -1.923 ML 34 32 6 37 6 1 1 54 78 -9.472 -9.818 -1.846 -2.167 -9.668 -1.013 0.397 -0.517 0.231 -0.303 MR 35 32 6 37 6 1 1 54 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 0 52 76 -12.922 -11.621 -3.903 -8.100 -8.117 -0.112 IL 37 37 5 37 6 1 1 55 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 1 55 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 9 46 G A - - MP 39 38 6 43 4 2 4 53 78 -12.557 -12.764 -0.001 -11.179 -0.468 -2.127 -5.241 -2.323 -5.180 -1.999 -1.320 -2.572 3.224 0.496 -2.391 -3.898 0.388 -1.141 -0.119 -1.837 ML 40 38 6 43 4 1 1 53 77 -1.282 -9.208 -0.779 -7.937 1.335 0.286 -4.409 -2.248 MR 41 38 6 43 4 1 1 52 77 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 0 51 76 -8.848 -8.530 -0.127 -3.656 IL 43 43 5 43 4 1 1 53 77 -5.953 -6.637 -0.041 -9.122 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 1 54 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 11 - a - - - ML 45 44 6 47 3 1 3 51 76 -13.805 -0.000 -12.459 0.877 -0.606 -0.526 -0.300 D 46 44 6 47 3 0 0 49 73 -7.311 -2.824 -0.230 IL 47 47 3 47 3 1 1 53 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 12 - A - - - ML 48 47 3 50 3 1 2 50 75 -13.805 -0.000 -12.459 1.960 -4.693 -7.922 -3.887 D 49 47 3 50 3 0 0 48 73 -7.311 -2.824 -0.230 IL 50 50 3 50 3 1 1 52 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 13 - C - - - ML 51 50 3 53 3 1 1 49 74 -14.100 -0.044 -5.064 -0.855 1.489 -3.009 -0.954 D 52 50 3 53 3 0 0 48 72 -6.411 -1.524 -0.642 IL 53 53 3 53 3 1 1 50 75 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 45 - A - - MR 54 53 3 56 5 1 1 48 73 -12.698 -0.453 -2.946 -3.010 -5.993 1.342 -0.649 -2.367 -0.657 D 55 53 3 56 5 0 0 47 71 -8.523 -3.878 -0.251 -7.580 -3.576 IR 56 56 3 56 5 1 1 49 73 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 14 44 c a - - MP 57 56 3 61 6 2 2 48 72 -13.218 -13.157 -0.145 -3.395 -12.214 -12.609 -1.395 -3.230 -1.506 -1.716 2.343 -0.514 -0.589 2.084 -5.214 -2.384 -5.782 -1.494 -0.050 -0.990 -2.496 0.955 ML 58 56 3 61 6 1 1 47 71 -11.888 -2.417 -0.320 -6.643 -12.084 -9.613 -4.785 1.425 -5.852 0.335 MR 59 56 3 61 6 1 1 46 71 -12.067 -10.796 -1.721 -0.562 -5.908 -8.988 1.358 -2.162 -0.280 -1.359 D 60 56 3 61 6 0 0 46 70 -12.042 -10.740 -0.176 -7.219 -7.237 -3.312 IL 61 61 5 61 6 1 1 47 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 62 62 6 62 5 1 1 46 70 -4.779 -2.867 -0.304 -6.458 -7.564 0.000 0.000 0.000 0.000 [ MATP 13 ] 15 42 c g - - MP 63 62 6 67 6 2 2 46 70 -13.421 -13.360 -0.001 -12.136 -12.416 -12.811 -3.604 -7.182 -7.584 0.801 -3.764 -8.400 2.123 -7.248 2.054 1.695 -8.006 -0.834 0.760 -7.725 -4.127 -6.246 ML 64 62 6 67 6 1 1 45 69 -12.119 -12.465 -0.015 -6.874 -12.315 -9.844 1.174 0.335 -4.265 -1.216 MR 65 62 6 67 6 1 1 44 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 66 62 6 67 6 0 0 41 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 67 67 5 67 6 1 1 45 70 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 68 68 6 68 5 1 1 45 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 16 41 C G - - MP 69 68 6 73 6 2 2 44 68 -13.704 -13.644 -0.001 -12.420 -12.700 -13.095 -8.062 -7.550 -8.039 -0.448 -7.099 -8.859 3.073 -7.684 -7.962 2.195 -8.448 -0.996 0.704 -8.182 -4.546 -4.031 ML 70 68 6 73 6 1 1 42 67 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 71 68 6 73 6 1 1 42 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 72 68 6 73 6 0 0 39 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 73 73 5 73 6 1 1 43 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 74 74 6 74 5 1 1 43 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 17 40 G C - - MP 75 74 6 79 6 2 2 42 66 -13.704 -13.644 -0.001 -12.420 -12.700 -13.095 -7.956 -6.951 -7.843 -0.554 -7.639 -8.522 1.316 -7.947 -8.021 3.191 -8.388 -3.326 1.794 -7.824 -3.638 -6.646 ML 76 74 6 79 6 1 1 40 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 77 74 6 79 6 1 1 40 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 78 74 6 79 6 0 0 37 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 79 79 5 79 6 1 1 41 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 80 80 6 80 5 1 1 41 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 18 39 U G - - MP 81 80 6 85 6 2 2 40 64 -13.704 -13.644 -0.001 -12.420 -12.700 -13.095 -8.838 -1.884 -8.722 -2.736 0.306 -3.028 1.162 -8.188 -8.628 0.878 -9.063 -6.239 -1.029 -8.967 3.249 -3.043 ML 82 80 6 85 6 1 1 38 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 6 85 6 1 1 38 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 6 85 6 0 0 35 60 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 39 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 39 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 19 38 C A - - MP 87 86 6 91 6 2 2 38 62 -13.704 -13.644 -0.001 -12.420 -12.700 -13.095 -1.598 -10.748 -10.039 -6.999 3.287 -10.238 -4.158 -9.330 2.445 -7.035 -10.263 -8.853 -1.431 -10.582 -6.148 -8.931 ML 88 86 6 91 6 1 1 36 61 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 36 60 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 33 58 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 37 62 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 37 61 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 20 37 A C - - MP 93 92 6 97 6 2 2 36 60 -13.704 -13.644 -0.001 -12.420 -12.700 -13.095 -9.775 3.990 -9.922 -4.786 -11.115 -12.567 -6.700 -9.892 -9.515 -5.129 -10.151 -5.772 -7.044 -11.153 -8.604 -8.540 ML 94 92 6 97 6 1 1 34 59 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 34 58 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 31 56 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 35 60 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 35 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 21 36 G G - - MP 99 98 6 103 6 2 2 34 58 -13.704 -13.644 -0.001 -12.420 -12.700 -13.095 -9.926 -8.744 -9.946 -5.052 -10.012 -11.669 -5.676 -9.752 -2.041 -5.376 3.967 -6.074 -6.393 -11.010 -7.632 -8.615 ML 100 98 6 103 6 1 1 32 57 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 32 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 29 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 33 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 33 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 22 35 G A - - MP 105 104 6 109 6 2 2 32 56 -13.704 -13.644 -0.001 -12.420 -12.700 -13.095 -0.011 -8.378 -9.912 -2.408 -12.039 -13.199 -7.499 -9.954 3.695 -2.217 -10.142 0.511 -2.210 -11.216 -9.331 -8.510 ML 106 104 6 109 6 1 1 30 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 30 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 27 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 31 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 31 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 23 34 g c - - MP 111 110 6 115 6 2 2 30 54 -13.704 -13.644 -0.001 -12.420 -12.700 -13.095 -3.569 -7.614 -2.155 0.414 -6.856 -8.750 2.231 -7.491 -3.781 2.285 -8.305 -5.233 2.052 -8.083 -0.982 -6.536 ML 112 110 6 115 6 1 1 28 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 28 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 26 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 29 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 29 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 24 33 C G - - MP 117 116 6 121 6 2 2 28 52 -13.704 -13.644 -0.001 -12.420 -12.700 -13.095 -8.243 -7.957 -8.217 1.552 -7.054 -9.019 3.004 -7.722 -8.085 0.378 -8.581 -5.536 1.790 -8.414 -2.155 -6.808 ML 118 116 6 121 6 1 1 27 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 26 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 24 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 27 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 27 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 25 32 c g - - MP 123 122 6 127 4 2 2 26 50 -12.897 -13.104 -0.001 -11.519 -8.133 -7.693 -8.099 1.818 -7.078 -8.890 2.703 -7.700 -8.016 2.197 -8.497 -5.279 -0.483 -8.251 -1.013 -3.250 ML 124 122 6 127 4 1 1 26 50 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 4 1 1 25 49 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 126 122 6 127 4 0 0 24 48 -4.568 -4.250 -2.265 -0.520 IL 127 127 5 127 4 1 1 27 51 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 128 128 6 128 3 1 1 26 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 26 - G - - - ML 129 128 6 131 3 1 1 24 48 -13.808 -0.000 -12.462 -4.452 -4.192 1.922 -3.175 D 130 128 6 131 3 0 0 22 46 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 25 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 27 - g - - - ML 132 131 3 134 3 1 1 23 47 -2.340 -0.318 -12.462 -0.084 -0.202 0.676 -0.761 D 133 131 3 134 3 0 0 18 43 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 24 48 -1.086 -0.922 -9.814 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - A - - - ML 135 134 3 137 3 1 1 9 27 -13.808 -0.000 -12.462 1.619 -0.567 -2.420 -3.903 D 136 134 3 137 3 0 0 13 32 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 31 - A - - - ML 138 137 3 140 2 1 1 1 1 * 0.000 1.962 -3.331 -8.769 -8.645 D 139 137 3 140 2 0 0 0 0 * 0.000 IL 140 140 3 140 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 141 140 3 -1 0 0 0 0 0 // HMMER3/f [i1.1 | October 2013] NAME SRP_S_domain DESC Signal recognition particle small S-domain LENG 46 MAXL 94 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri May 30 16:15:04 2014 COM [1] /share/data/bin/cmbuild -F /share/data/people/ppg15/motifs/SRP_S_domain/CM /share/data/people/ppg15/motifs/SRP_S_domain/SEED NSEQ 216 EFFN 213.841187 CKSUM 1225300815 STATS LOCAL MSV -8.0382 0.74230 STATS LOCAL VITERBI -8.6005 0.74230 STATS LOCAL FORWARD -3.2535 0.74230 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.28603 1.35943 1.14031 1.91659 1.38629 1.38629 1.38629 1.38629 0.15012 7.68574 1.97375 1.46634 0.26236 0.00000 * 1 0.96564 1.77690 2.22468 1.07295 1 a - - < 1.38629 1.38629 1.38629 1.38629 0.05728 2.89788 7.53669 0.01923 3.96101 0.32058 1.29364 2 2.01461 1.28887 0.84830 1.81458 3 g - - < 1.38629 1.38629 1.38629 1.38629 0.01274 7.64758 4.40744 1.46634 0.26236 4.43684 0.01190 3 1.98258 1.25556 0.92660 1.70665 4 g - - < 1.38629 1.38629 1.38629 1.38629 0.00452 7.63580 5.51526 1.46634 0.26236 1.82666 0.17548 4 1.51070 1.35205 1.17496 1.55257 5 g - - < 1.38629 1.38629 1.38629 1.38629 0.00096 7.64024 7.64024 1.46634 0.26236 1.47455 0.25991 5 1.69970 1.87094 0.55528 2.41494 6 G - - < 1.38629 1.38629 1.38629 1.38629 0.02485 3.72696 7.65069 0.03908 3.26173 2.48932 0.08661 6 2.11996 1.22152 1.25771 1.20105 8 u - - < 1.38629 1.38629 1.38629 1.38629 0.01911 7.65329 3.99234 1.46634 0.26236 2.51375 0.08443 7 1.79540 2.35589 0.55211 1.81156 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.07448 2.64095 7.63750 0.01347 4.31416 0.01913 3.96593 8 0.77880 1.80616 1.75060 1.59411 11 a - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68574 7.68574 1.46634 0.26236 1.09861 0.40547 9 0.02801 4.63841 6.86664 4.08034 12 A - - - 1.38629 1.38629 1.38629 1.38629 0.00092 7.68574 7.68574 1.46634 0.26236 1.09861 0.40547 10 1.97892 0.35435 3.47120 2.04735 13 C - - - 1.38629 1.38629 1.38629 1.38629 0.14674 7.68574 1.99492 1.46634 0.26236 1.09861 0.40547 11 2.80278 0.40420 3.45849 1.42558 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.00106 7.54006 7.54006 1.46634 0.26236 0.00673 5.00440 12 1.64162 1.25864 0.88633 2.20611 15 g - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 13 3.05327 0.64202 1.14670 2.21748 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 14 3.12262 1.85494 0.55033 1.50175 17 G - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 15 3.61453 1.49149 2.15318 0.45900 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 16 3.84039 0.48894 1.07650 3.71105 19 C - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 17 0.00516 7.06695 5.72649 6.87556 20 A - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 18 6.03505 6.49052 0.00537 6.54315 21 G - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 19 2.60063 7.49648 0.09294 4.27095 22 G - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 20 2.27259 1.22311 1.16803 1.23216 23 g - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 21 1.69262 0.68943 2.48765 1.46535 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 22 1.50867 0.89739 1.24310 2.49286 25 c - - < 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 23 4.46972 4.29127 0.05427 3.58676 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 24 1.44456 1.52649 0.91802 1.91364 27 g - - _ 1.38629 1.38629 1.38629 1.38629 0.22071 1.62153 7.68800 0.64264 0.74634 1.09861 0.40547 25 0.26416 1.77967 3.06365 4.08994 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 26 0.02639 3.69556 7.45280 7.36678 31 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 27 3.08142 1.24802 0.82525 1.47443 32 g - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 28 1.52717 2.50234 0.66280 1.68441 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 29 1.31116 1.18666 1.08135 2.45205 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 30 0.12298 4.28271 7.24534 2.29064 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 31 4.11771 6.29120 0.02163 5.72567 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 32 6.99237 0.00588 6.84693 5.55052 37 C - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 33 0.00663 7.15227 5.35382 6.81552 38 A - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 34 2.22140 1.96852 0.30986 3.99918 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 35 1.52468 0.56041 1.82478 2.99415 40 C - - > 1.38629 1.38629 1.38629 1.38629 0.00092 7.68800 7.68800 1.46634 0.26236 1.09861 0.40547 36 2.27116 1.24967 0.63769 2.50473 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.16720 7.68800 1.87400 1.46634 0.26236 1.09861 0.40547 37 0.98120 1.59314 1.28656 1.92666 42 a - - > 1.38629 1.38629 1.38629 1.38629 0.22656 7.51922 1.59858 1.46634 0.26236 0.00595 5.12680 38 0.82751 2.42452 2.35463 0.96913 44 a - - > 1.38629 1.38629 1.38629 1.38629 0.00111 7.49855 7.49855 1.46634 0.26236 0.19586 1.72669 39 0.45637 1.83645 3.02628 1.84173 45 A - - - 1.38629 1.38629 1.38629 1.38629 0.20374 7.65560 1.69363 1.46634 0.26236 4.21420 0.01489 40 0.34045 1.92044 2.33675 3.09302 46 A - - > 1.38629 1.38629 1.38629 1.38629 0.01289 7.45302 4.40426 1.46634 0.26236 0.27460 1.42660 41 2.69513 1.29337 0.65739 1.96671 47 G - - > 1.38629 1.38629 1.38629 1.38629 0.02823 7.62546 3.59906 1.46634 0.26236 0.89239 0.52708 42 2.52346 0.74599 1.91123 1.21182 48 c - - > 1.38629 1.38629 1.38629 1.38629 0.00457 7.62417 5.50362 1.46634 0.26236 4.89040 0.00755 43 1.79586 1.37205 1.28240 1.19384 49 u - - > 1.38629 1.38629 1.38629 1.38629 0.00957 7.62058 4.70640 1.46634 0.26236 2.82354 0.06123 44 1.79505 1.10302 1.26781 1.51156 50 c - - > 1.38629 1.38629 1.38629 1.38629 0.01513 7.61561 4.23183 1.46634 0.26236 2.09939 0.13071 45 1.79245 0.94103 1.43305 1.58649 51 c - - > 1.38629 1.38629 1.38629 1.38629 0.07632 3.01072 3.72029 0.70019 0.68615 1.40082 0.28289 46 1.38850 1.17732 1.35491 1.69022 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.00050 7.60513 * 1.46634 0.26236 0.00000 * //