INFERNAL1/a [1.1 | October 2013] NAME sarcin-ricin-2 DESC Sarcin-ricin motif 2 STATES 187 NODES 51 CLEN 61 W 167 ALPH RNA RF no CONS yes MAP yes DATE Fri May 30 16:10:02 2014 COM [1] /share/data/bin/cmbuild -F /share/data/people/ppg15/motifs/sarcin-ricin-2/CM /share/data/people/ppg15/motifs/sarcin-ricin-2/SEED COM [2] /share/data/bin/cmcalibrate --mpi --seed 1 /share/data/people/ppg15/motifs/sarcin-ricin-2/CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 56 EFFN 56.000000 CKSUM 3136316517 NULL 0.000 0.000 0.000 0.000 GA 15.00 EFP7GF -2.0436 0.74970 ECMLC 0.53742 -6.94706 2.79538 1600000 225444 0.005323 ECMGC 0.48481 -7.17203 3.86829 1600000 84451 0.004736 ECMLI 0.52472 -4.29229 4.88593 1600000 148158 0.008099 ECMGI 0.49843 -4.57998 5.73785 1600000 68474 0.005842 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 167 288 -10.980 -11.187 -0.716 -1.357 IL 1 1 2 1 4 1 12 170 290 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 12 169 290 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 5 - G - - - ML 3 2 3 5 3 1 11 168 288 -11.189 -0.214 -2.860 -0.406 -0.964 1.346 -2.393 D 4 2 3 5 3 0 9 166 286 -11.972 -0.763 -1.284 IL 5 5 3 5 3 1 12 169 289 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 6 - c - - - ML 6 5 3 8 3 1 12 167 288 -11.498 -0.002 -10.152 -0.385 0.606 0.427 -1.447 D 7 5 3 8 3 0 8 163 283 -11.303 -4.146 -0.084 IL 8 8 3 8 3 1 12 168 288 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 7 - g - - - ML 9 8 3 11 3 1 11 166 287 -11.520 -0.002 -10.174 -1.303 0.165 0.776 -0.394 D 10 8 3 11 3 0 8 163 283 -11.232 -2.521 -0.277 IL 11 11 3 11 3 1 11 167 287 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 8 - a - - - ML 12 11 3 14 3 1 10 165 286 -11.893 -0.390 -2.078 0.397 -0.832 0.382 -0.288 D 13 11 3 14 3 0 8 162 282 -9.735 -2.335 -0.321 IL 14 14 3 14 3 1 12 166 287 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 119 - C - - MR 15 14 3 17 3 1 16 165 285 -11.579 -0.002 -9.896 -3.582 1.291 -0.049 -0.994 D 16 14 3 17 3 0 8 161 281 -11.800 -1.199 -0.826 IR 17 17 3 17 3 1 11 165 285 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 118 - c - - MR 18 17 3 20 3 1 16 164 284 -11.881 -0.002 -10.199 -2.355 0.834 0.607 -1.000 D 19 17 3 20 3 0 7 157 278 -10.995 -6.173 -0.021 IR 20 20 3 20 3 1 11 164 284 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 117 - g - - MR 21 20 3 23 3 1 16 163 283 -11.881 -0.002 -10.199 -0.483 -0.292 0.385 0.216 D 22 20 3 23 3 0 7 157 278 -10.995 -6.173 -0.021 IR 23 23 3 23 3 1 11 163 284 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 116 - u - - MR 24 23 3 26 5 1 15 162 282 -10.530 -0.004 -10.346 -10.558 -11.449 -0.108 0.376 -1.159 0.408 D 25 23 3 26 5 0 7 157 278 -9.167 -1.702 -6.794 -8.225 -0.560 IR 26 26 3 26 5 1 11 162 282 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 115 c g - - MP 27 26 3 31 6 2 15 161 281 -11.687 -11.626 -0.004 -10.403 -10.683 -11.078 -0.594 -0.681 -1.428 1.166 -3.312 -1.842 1.552 -3.671 -1.283 1.156 -1.067 -0.849 1.217 -3.460 1.150 -1.308 ML 28 26 3 31 6 1 10 159 279 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 10 158 279 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 7 154 274 -13.042 -11.741 -7.538 -8.220 -3.821 -0.120 IL 31 31 5 31 6 1 11 160 280 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 11 160 280 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 10 114 c g - - MP 33 32 6 37 6 2 13 159 279 -11.687 -11.626 -0.038 -5.380 -10.683 -11.078 -3.121 -0.875 -0.698 1.513 -1.156 -0.968 2.110 -3.671 -3.387 -0.662 -1.799 0.674 1.048 -1.637 -0.162 -0.685 ML 34 32 6 37 6 1 9 157 277 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 9 156 276 -7.781 -6.510 -2.418 -6.488 -0.419 -4.701 -0.312 -1.277 1.110 -0.681 D 36 32 6 37 6 0 7 154 274 -12.941 -11.640 -7.437 -8.119 -2.260 -0.356 IL 37 37 5 37 6 1 11 158 279 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 11 158 278 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 11 113 u a - - MP 39 38 6 43 6 2 11 157 277 -11.653 -11.592 -0.024 -10.369 -10.649 -6.086 -3.166 -3.377 0.107 1.318 -3.340 -2.174 1.604 -2.064 -3.428 -0.204 -4.001 0.048 2.277 -3.504 -0.322 -0.265 ML 40 38 6 43 6 1 9 154 275 -7.761 -8.107 -2.822 -0.279 -7.957 -5.487 1.573 -1.839 -1.524 -1.334 MR 41 38 6 43 6 1 9 154 275 -8.918 -7.647 -3.556 -7.625 -0.176 -5.839 -0.621 -1.369 1.044 -0.152 D 42 38 6 43 6 0 6 154 274 -12.610 -11.309 -1.048 -7.788 -7.805 -0.980 IL 43 43 5 43 6 1 10 156 277 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 10 156 277 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 12 112 c g - - MP 45 44 6 49 6 2 9 155 275 -11.713 -11.653 -0.039 -10.429 -10.709 -5.333 -5.357 -5.249 -5.441 1.587 -4.692 -6.285 2.482 -1.663 -5.388 1.148 -5.922 0.565 1.009 -5.602 0.200 -4.272 ML 46 44 6 49 6 1 7 153 274 -7.761 -8.107 -2.822 -2.516 -0.614 -5.487 1.573 -1.839 -1.524 -1.334 MR 47 44 6 49 6 1 8 153 274 -8.918 -7.647 -3.556 -7.625 -0.176 -5.839 -0.585 -0.680 1.092 -0.794 D 48 44 6 49 6 0 6 152 272 -11.973 -10.672 -2.345 -7.151 -1.261 -1.404 IL 49 49 5 49 6 1 8 154 275 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 8 154 275 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 13 111 c g - - MP 51 50 6 55 6 2 8 153 274 -11.698 -11.637 -0.003 -10.414 -10.693 -11.088 -3.611 -3.790 0.050 0.213 -3.678 -4.648 2.191 -4.074 -1.785 0.237 -4.417 0.686 2.105 -2.103 0.171 -3.009 ML 52 50 6 55 6 1 6 152 272 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 6 1 7 152 272 -9.903 -8.632 -0.135 -8.610 -3.744 -6.824 -0.767 0.024 0.651 -0.277 D 54 50 6 55 6 0 5 151 271 -11.529 -10.227 -0.258 -6.706 -6.723 -2.799 IL 55 55 5 55 6 1 7 152 273 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 56 56 6 56 5 1 7 152 273 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 14 110 c g - - MP 57 56 6 61 4 2 6 151 272 -10.781 -12.027 -0.878 -1.136 -1.907 -1.016 1.306 1.187 -0.435 -1.821 2.139 -3.870 -3.590 0.691 -4.163 -2.227 0.784 -3.664 0.114 -2.791 ML 58 56 6 61 4 1 5 151 271 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 59 56 6 61 4 1 5 151 271 -4.102 -12.528 -0.390 -2.485 0.368 -0.385 -0.191 0.094 D 60 56 6 61 4 0 3 148 269 -12.737 -14.007 -2.036 -0.404 IL 61 61 5 61 4 1 5 151 271 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 62 62 6 62 3 1 5 151 272 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 109 - G - - MR 63 62 6 65 5 1 4 150 270 -0.880 -2.277 -9.800 -2.008 -10.903 -2.383 -0.684 1.639 -3.812 D 64 62 6 65 5 0 3 148 268 -10.313 -0.377 -2.563 -4.214 -7.364 IR 65 65 3 65 5 1 5 150 271 -0.839 -1.534 -10.697 -3.409 -9.971 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 101 a a - - MP 66 65 3 70 4 2 3 148 268 -10.447 -10.654 -0.895 -1.118 2.155 -3.258 0.890 -0.371 -2.171 -2.109 -0.124 -3.604 1.366 0.013 -3.894 0.267 -0.238 -0.877 -1.514 -0.394 ML 67 65 3 70 4 1 5 149 270 -1.237 -6.475 -0.896 -5.205 -0.198 -0.093 -0.799 0.692 MR 68 65 3 70 4 1 2 147 267 -9.145 -8.174 -0.642 -1.499 1.112 0.382 -1.820 -1.988 D 69 65 3 70 4 0 1 145 266 -4.568 -4.250 -2.265 -0.520 IL 70 70 5 70 4 1 6 150 270 -0.670 -5.584 -1.527 -8.069 0.000 0.000 0.000 0.000 IR 71 71 6 71 3 1 4 148 268 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 19 - u - - - ML 72 71 6 74 3 1 4 146 267 -11.172 -0.002 -9.826 0.301 -0.882 -1.316 0.867 D 73 71 6 74 3 0 0 145 265 -11.998 -4.927 -0.049 IL 74 74 3 74 3 1 4 147 268 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 20 - g - - - ML 75 74 3 77 5 1 3 145 266 -10.153 -0.005 -9.969 -10.181 -11.072 -0.431 -0.830 0.543 0.309 D 76 74 3 77 5 0 0 144 265 -9.934 -0.020 -9.195 -7.570 -7.483 IL 77 77 3 77 5 1 1 146 266 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 21 100 A A - - MP 78 77 3 82 4 2 3 145 265 -10.980 -3.872 -0.105 -9.601 3.800 -1.799 -8.041 -3.280 -7.769 -9.466 -3.447 -7.773 -7.762 -3.592 -8.268 -4.326 0.490 -9.030 -5.413 -6.735 ML 79 77 3 82 4 1 1 143 264 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 80 77 3 82 4 1 1 142 263 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 81 77 3 82 4 0 0 141 262 -4.568 -4.250 -2.265 -0.520 IL 82 82 5 82 4 1 1 144 265 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 83 83 6 83 3 1 1 144 264 -3.205 -0.193 -5.905 0.000 0.000 0.000 0.000 [ MATL 20 ] 23 - G - - - ML 84 83 6 86 5 1 2 142 263 -10.842 -0.003 -10.658 -10.870 -11.761 -6.378 -3.934 1.969 -7.083 D 85 83 6 86 5 0 0 140 261 -4.959 -0.803 -4.221 -2.596 -2.508 IL 86 86 3 86 5 1 1 142 263 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 24 95 U A - - MP 87 86 3 91 6 2 3 141 262 -11.886 -11.825 -0.003 -10.601 -10.881 -11.276 -11.941 -11.686 -11.666 -9.591 -9.943 -11.646 -7.195 -11.205 -10.207 -9.641 -11.872 -10.848 3.995 -10.347 -5.615 -5.502 ML 88 86 3 91 6 1 1 139 260 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 3 91 6 1 1 138 259 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 3 91 6 0 0 135 255 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 140 261 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 140 261 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 25 94 A G - - MP 93 92 6 97 6 2 3 139 260 -2.869 -11.825 -0.215 -10.601 -10.881 -11.276 -8.443 -7.776 3.840 -1.415 -0.864 -8.691 -2.625 -1.468 -8.004 -4.292 -8.315 -5.304 -3.587 -8.805 -4.610 -6.894 ML 94 92 6 97 6 1 1 137 258 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 135 256 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 134 254 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 138 259 -5.929 -1.465 -0.710 -7.847 -8.623 -8.284 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 137 258 -2.095 -1.208 -7.874 -6.041 -1.673 0.000 0.000 0.000 0.000 [ MATP 23 ] 27 91 a u - - MP 99 98 6 103 6 2 2 137 258 -3.307 -11.782 -0.288 -10.559 -4.753 -4.578 -5.192 -4.970 -5.277 2.363 -4.830 -1.251 1.860 -5.302 -5.306 1.252 -5.820 0.678 1.080 -5.393 -1.176 -4.224 ML 100 98 6 103 6 1 1 136 256 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 132 252 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 133 253 -11.179 -9.877 -1.623 -6.356 -6.374 -0.622 IL 103 103 5 103 6 1 1 137 257 -2.129 -0.516 -4.026 -7.763 -8.539 -8.199 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 135 256 -1.695 -1.469 -8.718 -6.886 -1.648 0.000 0.000 0.000 0.000 [ MATP 24 ] 30 88 c g - - MP 105 104 6 109 4 2 2 136 256 -10.726 -10.933 -0.164 -3.235 -6.055 -5.765 -6.051 0.740 -4.919 -6.885 2.937 -5.574 -5.914 0.746 -6.424 -3.342 1.948 -6.237 -0.244 -4.638 ML 106 104 6 109 4 1 1 134 255 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 4 1 1 123 243 -6.894 -5.923 -3.790 -0.148 -1.827 -3.084 1.774 -2.471 D 108 104 6 109 4 0 0 131 252 -8.280 -7.962 -0.722 -1.371 IL 109 109 5 109 4 1 1 136 256 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 110 110 6 110 3 1 1 135 256 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 31 - u - - - ML 111 110 6 113 3 1 1 134 255 -11.627 -0.078 -4.265 -0.444 -0.303 -0.771 0.902 D 112 110 6 113 3 0 0 114 235 -10.819 -6.332 -0.019 IL 113 113 3 113 3 1 1 135 255 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 32 - u - - - ML 114 113 3 116 3 1 1 134 254 -11.551 -0.064 -4.548 -0.296 -2.047 0.491 0.621 D 115 113 3 116 3 0 0 112 233 -11.129 -6.642 -0.015 IL 116 116 3 116 3 1 1 134 254 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 33 - U - - - ML 117 116 3 119 3 1 1 133 253 -11.489 -0.002 -10.143 -0.553 -1.327 -0.123 1.001 D 118 116 3 119 3 0 0 111 231 -11.330 -6.843 -0.013 IL 119 119 3 119 3 1 1 133 253 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 34 - u - - - ML 120 119 3 122 3 1 1 132 252 -11.489 -0.035 -5.399 -1.690 0.033 -0.477 0.962 D 121 119 3 122 3 0 0 109 229 -11.330 -6.843 -0.013 IL 122 122 3 122 3 1 1 132 253 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 35 - u - - - ML 123 122 3 125 3 1 1 131 251 -11.456 -0.046 -4.997 -0.261 -0.198 0.085 0.302 D 124 122 3 125 3 0 0 107 227 -11.426 -6.939 -0.012 IL 125 125 3 125 3 1 1 131 252 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 36 - g - - - ML 126 125 3 128 3 1 1 130 251 -11.411 -0.145 -3.389 0.158 -0.899 0.275 0.186 D 127 125 3 128 3 0 0 105 224 -11.541 -7.054 -0.011 IL 128 128 3 128 3 1 1 131 251 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 37 - G - - - ML 129 128 3 131 3 1 1 130 250 -11.268 -0.247 -2.673 -0.320 -2.399 1.221 -0.560 D 130 128 3 131 3 0 0 102 221 -11.841 -7.354 -0.009 IL 131 131 3 131 3 1 1 131 251 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 38 - A - - - ML 132 131 3 134 3 1 1 130 250 -11.023 -0.051 -4.854 1.516 -4.278 -0.306 -1.843 D 133 131 3 134 3 0 0 98 215 -12.197 -7.710 -0.007 IL 134 134 3 134 3 1 1 130 251 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 39 - G - - - ML 135 134 3 137 3 1 1 129 250 -0.179 -3.113 -9.629 0.078 -3.861 1.319 -1.396 D 136 134 3 137 3 0 0 93 196 -12.253 -4.552 -0.063 IL 137 137 3 137 3 1 1 129 249 -0.221 -2.822 -11.059 0.000 0.000 0.000 0.000 [ MATL 34 ] 54 - a - - - ML 138 137 3 140 3 1 1 97 194 -11.023 -0.002 -9.678 0.760 -0.869 -0.410 0.009 D 139 137 3 140 3 0 0 93 190 -12.197 -2.161 -0.365 IL 140 140 3 140 3 1 1 98 195 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 55 - g - - - ML 141 140 3 143 3 1 1 96 193 -11.268 -0.002 -9.922 -0.090 -0.250 0.472 -0.264 D 142 140 3 143 3 0 0 91 188 -11.841 -7.354 -0.009 IL 143 143 3 143 3 1 1 97 194 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 56 - a - - - ML 144 143 3 146 3 1 1 95 192 -11.268 -0.002 -9.922 0.297 -0.462 -0.244 0.265 D 145 143 3 146 3 0 0 91 188 -11.841 -2.367 -0.311 IL 146 146 3 146 3 1 1 96 193 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 57 - g - - - ML 147 146 3 149 3 1 1 94 191 -11.411 -0.002 -10.065 -0.443 -1.227 0.930 -0.102 D 148 146 3 149 3 0 0 90 187 -11.541 -2.805 -0.223 IL 149 149 3 149 3 1 1 95 192 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 58 - u - - - ML 150 149 3 152 3 1 1 93 190 -11.489 -0.002 -10.143 0.260 -0.882 -0.394 0.584 D 151 149 3 152 3 0 0 89 186 -11.330 -6.843 -0.013 IL 152 152 3 152 3 1 1 94 191 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 59 - u - - - ML 153 152 3 155 3 1 1 92 189 -11.489 -0.002 -10.143 0.399 -1.062 -0.499 0.580 D 154 152 3 155 3 0 0 89 186 -11.330 -2.844 -0.217 IL 155 155 3 155 3 1 1 93 190 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 60 - g - - - ML 156 155 3 158 3 1 1 91 188 -11.551 -0.002 -10.205 0.199 -1.893 0.963 -0.658 D 157 155 3 158 3 0 0 89 186 -11.129 -3.916 -0.100 IL 158 158 3 158 3 1 1 92 189 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 61 - a - - - ML 159 158 3 161 3 1 1 90 187 -11.573 -0.002 -10.227 0.720 -0.821 -0.108 -0.220 D 160 158 3 161 3 0 0 89 186 -11.045 -0.915 -1.092 IL 161 161 3 161 3 1 1 91 188 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 62 - g - - - ML 162 161 3 164 3 1 1 89 186 -11.756 -0.001 -10.410 0.150 -0.604 0.210 0.105 D 163 161 3 164 3 0 0 88 185 -9.987 -0.073 -4.379 IL 164 164 3 164 3 1 1 90 187 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 63 - G - - - ML 165 164 3 167 3 1 1 88 185 -11.896 -0.001 -10.550 -4.753 -3.324 1.862 -2.133 D 166 164 3 167 3 0 0 85 182 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 89 186 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 64 - a - - - ML 168 167 3 170 3 1 1 87 184 -11.896 -0.001 -10.550 0.475 0.402 -0.912 -0.401 D 169 167 3 170 3 0 0 84 181 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 88 185 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 65 - g - - - ML 171 170 3 173 3 1 1 86 183 -2.219 -0.350 -10.550 -0.048 -0.092 0.870 -1.905 D 172 170 3 173 3 0 0 83 179 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 86 183 -4.547 -0.073 -7.247 0.000 0.000 0.000 0.000 [ MATL 46 ] 67 - A - - - ML 174 173 3 176 3 1 1 85 182 -11.896 -0.678 -1.416 1.863 -3.553 -1.980 -5.358 D 175 173 3 176 3 0 0 81 178 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 88 185 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 68 - a - - - ML 177 176 3 179 3 1 1 87 183 -0.455 -2.957 -2.820 0.899 -0.947 0.103 -0.881 D 178 176 3 179 3 0 0 44 141 -11.923 -7.436 -0.009 IL 179 179 3 179 3 1 1 87 184 -0.274 -2.534 -10.742 0.000 0.000 0.000 0.000 [ MATL 48 ] 86 - c - - - ML 180 179 3 182 3 1 1 11 29 -11.001 -0.002 -9.656 0.016 0.336 -0.650 0.124 D 181 179 3 182 3 0 0 9 28 -12.222 -1.119 -0.891 IL 182 182 3 182 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 87 - u - - - ML 183 182 3 185 2 1 1 1 1 * 0.000 -0.176 -3.333 0.583 0.602 D 184 182 3 185 2 0 0 0 0 * 0.000 IL 185 185 3 185 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 50 ] - - - - - - E 186 185 3 -1 0 0 0 0 0 // HMMER3/f [i1.1 | October 2013] NAME sarcin-ricin-2 DESC Sarcin-ricin motif 2 LENG 61 MAXL 173 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Fri May 30 16:10:02 2014 COM [1] /share/data/bin/cmbuild -F /share/data/people/ppg15/motifs/sarcin-ricin-2/CM /share/data/people/ppg15/motifs/sarcin-ricin-2/SEED NSEQ 56 EFFN 56.000000 CKSUM 3136316517 STATS LOCAL MSV -8.9280 0.74970 STATS LOCAL VITERBI -10.9643 0.74970 STATS LOCAL FORWARD -1.9701 0.74970 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.25021 1.69632 1.21143 1.45918 1.38629 1.38629 1.38629 1.38629 0.81350 1.27648 1.28129 0.75402 0.63577 0.00000 * 1 1.66778 2.05438 0.45323 3.04518 5 G - - : 1.38629 1.38629 1.38629 1.38629 0.15190 5.88019 1.97953 1.46634 0.26236 0.24105 1.54087 2 1.65294 0.96590 1.09013 2.38922 6 c - - : 1.38629 1.38629 1.38629 1.38629 0.00453 6.09275 6.09275 1.46634 0.26236 2.24155 0.11238 3 2.28918 1.27188 0.84855 1.65909 7 g - - : 1.38629 1.38629 1.38629 1.38629 0.00446 6.10805 6.10805 1.46634 0.26236 1.04385 0.43401 4 1.11145 1.96317 1.12181 1.58564 8 a - - : 1.38629 1.38629 1.38629 1.38629 0.05375 6.15696 2.99154 1.46634 0.26236 0.04621 3.09767 5 1.41032 1.55214 1.47227 1.15602 9 u - - < 1.38629 1.38629 1.38629 1.38629 0.00400 6.21591 6.21591 1.46634 0.26236 3.24644 0.03969 6 1.35346 1.09586 1.81214 1.41018 10 c - - < 1.38629 1.38629 1.38629 1.38629 0.00400 6.21591 6.21591 1.46634 0.26236 3.24644 0.03969 7 1.38930 1.50975 2.05974 0.91057 11 u - - < 1.38629 1.38629 1.38629 1.38629 0.01952 6.21591 4.05503 1.46634 0.26236 0.08102 2.55329 8 1.58735 1.00651 1.46864 1.61042 12 c - - < 1.38629 1.38629 1.38629 1.38629 0.05602 6.26075 2.94561 1.46634 0.26236 0.20738 1.67511 9 1.91254 1.21773 1.63265 1.01892 13 u - - < 1.38629 1.38629 1.38629 1.38629 0.00397 6.22409 6.22409 1.46634 0.26236 0.07014 2.69214 10 1.06597 1.07058 2.09318 1.66336 14 a - - < 1.38629 1.38629 1.38629 1.38629 0.26408 6.36647 1.46805 1.46634 0.26236 1.09861 0.40547 11 0.85394 2.25024 1.24675 1.70676 15 a - - < 1.38629 1.38629 1.38629 1.38629 0.61801 2.96215 0.89337 1.11023 0.39970 0.42891 1.05331 12 1.17739 1.99798 2.29820 0.78555 19 u - - - 1.38629 1.38629 1.38629 1.38629 0.00567 5.86875 5.86875 1.46634 0.26236 3.44686 0.03236 13 1.68523 1.96193 1.00991 1.17196 20 g - - - 1.38629 1.38629 1.38629 1.38629 0.00557 5.88657 5.88657 1.46634 0.26236 0.00894 4.72221 14 0.11192 5.01456 4.70221 2.40609 21 A - - < 1.38629 1.38629 1.38629 1.38629 0.00344 6.36647 6.36647 1.46634 0.26236 1.09861 0.40547 15 5.80747 4.11332 0.02143 6.29583 23 G - - - 1.38629 1.38629 1.38629 1.38629 0.00344 6.36647 6.36647 1.46634 0.26236 1.09861 0.40547 16 7.69054 7.22686 7.82341 0.00159 24 U - - < 1.38629 1.38629 1.38629 1.38629 0.00344 6.36647 6.36647 1.46634 0.26236 1.09861 0.40547 17 0.08514 2.69749 5.20616 4.73806 25 A - - < 1.38629 1.38629 1.38629 1.38629 0.12824 2.13166 6.36647 0.02872 3.56457 1.09861 0.40547 18 1.11808 1.35971 1.38032 1.80265 27 a - - < 1.38629 1.38629 1.38629 1.38629 0.16597 3.00137 2.27095 0.55340 0.85565 1.09861 0.40547 19 2.22380 0.73095 2.17918 1.21329 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.10590 6.25945 2.31700 1.46634 0.26236 1.63247 0.21747 20 1.69406 1.59613 1.92070 0.76133 31 u - - _ 1.38629 1.38629 1.38629 1.38629 0.05656 6.18109 2.93888 1.46634 0.26236 4.61990 0.00990 21 1.59144 2.80489 1.04575 0.95600 32 u - - _ 1.38629 1.38629 1.38629 1.38629 0.04705 6.12889 3.12853 1.46634 0.26236 4.83687 0.00796 22 1.76932 2.30599 1.47182 0.69238 33 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00456 6.08640 6.08640 1.46634 0.26236 4.97788 0.00691 23 2.55750 1.36309 1.71718 0.71936 34 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02757 6.08640 3.69205 1.46634 0.26236 4.97788 0.00691 24 1.56746 1.52331 1.32758 1.17662 35 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03545 6.06349 3.42652 1.46634 0.26236 5.04425 0.00647 25 1.27657 2.00913 1.19583 1.25720 36 g - - _ 1.38629 1.38629 1.38629 1.38629 0.10379 6.03285 2.34151 1.46634 0.26236 5.12455 0.00597 26 1.60839 3.04919 0.53987 1.77450 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.17397 5.93437 1.85134 1.46634 0.26236 5.33367 0.00484 27 0.33521 4.35123 1.59841 2.66348 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04005 5.76669 3.32058 1.46634 0.26236 5.58170 0.00377 28 1.33211 4.06234 0.47178 2.35406 39 G - - _ 1.38629 1.38629 1.38629 1.38629 2.11625 0.13207 5.73313 1.98125 0.14838 3.17453 0.04271 29 0.85942 1.98849 1.67034 1.38029 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00628 5.76669 5.76669 1.46634 0.26236 1.49866 0.25287 30 1.44887 1.55968 1.05924 1.56905 55 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00531 5.93437 5.93437 1.46634 0.26236 5.33367 0.00484 31 1.18062 1.70671 1.55534 1.20287 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00531 5.93437 5.93437 1.46634 0.26236 1.64233 0.21509 32 1.69353 2.23654 0.74165 1.45682 57 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00481 6.03285 6.03285 1.46634 0.26236 1.94934 0.15358 33 1.20606 1.99794 1.65910 0.98163 58 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00456 6.08640 6.08640 1.46634 0.26236 4.97788 0.00691 34 1.10979 2.12271 1.73250 0.98398 59 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00456 6.08640 6.08640 1.46634 0.26236 1.97752 0.14898 35 1.24833 2.69847 0.71888 1.84257 60 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00437 6.12889 6.12889 1.46634 0.26236 2.73884 0.06683 36 0.88722 1.95552 1.46082 1.53868 61 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00430 6.14435 6.14435 1.46634 0.26236 0.62920 0.76146 37 1.28228 1.80495 1.24081 1.31318 62 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00379 6.26998 6.26998 1.46634 0.26236 0.03602 3.34172 38 4.68074 3.69042 0.09566 2.86483 63 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00344 6.36647 6.36647 1.46634 0.26236 1.09861 0.40547 39 1.05671 1.10796 2.01869 1.66421 64 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00344 6.36647 6.36647 1.46634 0.26236 1.09861 0.40547 40 1.41958 1.45010 0.78337 2.70645 65 g - - _ 1.38629 1.38629 1.38629 1.38629 0.24436 1.53678 6.36647 0.01590 4.14925 1.09861 0.40547 41 0.09516 3.84892 2.75870 5.10003 67 A - - _ 1.38629 1.38629 1.38629 1.38629 0.47036 6.36647 0.98482 1.46634 0.26236 1.09861 0.40547 42 0.76337 2.04278 1.31482 1.99719 68 a - - _ 1.38629 1.38629 1.38629 1.38629 2.01900 0.32134 1.95170 1.78058 0.18457 5.39081 0.00457 43 1.37517 1.15356 1.83672 1.30065 86 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00638 5.75159 5.75159 1.46634 0.26236 0.77359 0.61870 44 1.50857 3.69641 0.98235 0.96882 87 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03041 6.08313 3.58733 1.46634 0.26236 0.20755 1.67438 45 1.43712 2.26401 0.60314 2.19495 88 G - - > 1.38629 1.38629 1.38629 1.38629 0.07857 2.60731 6.30150 0.42513 1.06040 0.05181 2.98589 46 1.97938 1.72242 1.35820 0.85311 91 u - - > 1.38629 1.38629 1.38629 1.38629 0.04954 3.06581 6.36647 0.07215 2.66481 1.09861 0.40547 47 3.20902 5.50840 0.09753 3.02672 94 G - - > 1.38629 1.38629 1.38629 1.38629 0.00344 6.36647 6.36647 1.46634 0.26236 1.09861 0.40547 48 0.00448 7.67847 6.17732 6.24824 95 A - - > 1.38629 1.38629 1.38629 1.38629 0.07323 2.67513 6.36647 0.04915 3.03732 1.09861 0.40547 49 0.04404 3.73819 4.80490 4.50124 100 A - - > 1.38629 1.38629 1.38629 1.38629 0.08360 6.36647 2.54492 1.46634 0.26236 1.09861 0.40547 50 0.66431 1.78034 1.78350 1.90553 101 A - - > 1.38629 1.38629 1.38629 1.38629 1.32163 1.11716 0.90118 0.85388 0.55471 3.86441 0.02120 51 3.03787 1.86019 0.25023 4.02844 109 G - - - 1.38629 1.38629 1.38629 1.38629 0.00627 5.76870 5.76870 1.46634 0.26236 0.00758 4.88612 52 1.73382 1.86663 0.69482 1.77442 110 g - - > 1.38629 1.38629 1.38629 1.38629 0.02786 6.34692 3.66020 1.46634 0.26236 1.09861 0.40547 53 1.25032 2.24083 0.86460 1.68202 111 g - - > 1.38629 1.38629 1.38629 1.38629 0.04260 6.29170 3.22264 1.46634 0.26236 0.12770 2.12127 54 2.02211 1.94724 0.85080 1.21106 112 g - - > 1.38629 1.38629 1.38629 1.38629 0.04816 6.26395 3.09853 1.46634 0.26236 0.99705 0.46040 55 1.15289 2.52212 1.14260 1.25527 113 g - - > 1.38629 1.38629 1.38629 1.38629 0.00406 6.20185 6.20185 1.46634 0.26236 1.02396 0.44499 56 1.76722 2.07660 0.95720 1.13984 114 g - - > 1.38629 1.38629 1.38629 1.38629 0.00400 6.21591 6.21591 1.46634 0.26236 3.24644 0.03969 57 1.51966 1.60279 0.98153 1.58406 115 g - - > 1.38629 1.38629 1.38629 1.38629 0.05061 6.19560 3.05089 1.46634 0.26236 3.24644 0.03969 58 1.46131 1.12562 2.18977 1.10360 116 u - - : 1.38629 1.38629 1.38629 1.38629 0.00428 6.14926 6.14926 1.46634 0.26236 3.86936 0.02109 59 1.72098 1.58850 1.11912 1.23680 117 g - - : 1.38629 1.38629 1.38629 1.38629 0.00428 6.14926 6.14926 1.46634 0.26236 3.86936 0.02109 60 3.01895 0.80849 0.96590 2.07963 118 c - - : 1.38629 1.38629 1.38629 1.38629 0.18169 6.11618 1.80830 1.46634 0.26236 0.70393 0.68248 61 3.86909 0.49110 1.42019 2.07543 119 C - - : 1.38629 1.38629 1.38629 1.38629 0.85048 0.55723 * 0.65949 0.72798 0.00000 * //