INFERNAL1/a [1.1.4 | Dec 2020] NAME M23 ACC RF03006 DESC M23 RNA STATES 171 NODES 48 CLEN 54 W 71 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 19:12:57 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 31 EFFN 5.687622 CKSUM 1987826663 NULL 0.000 0.000 0.000 0.000 GA 41.20 TC 41.20 NC 40.60 EFP7GF -14.5758 0.71930 ECMLC 0.66466 -6.31054 3.00096 1600000 584840 0.002052 ECMGC 0.33895 -20.60812 -3.24539 1600000 143862 0.002780 ECMLI 0.58891 -6.10368 4.12514 1600000 495825 0.002420 ECMGI 0.37997 -14.42239 0.25801 1600000 105826 0.003780 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 71 90 -7.996 -8.203 -0.025 -6.617 IL 1 1 2 1 4 1 16 75 95 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 74 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - C - - - ML 3 2 3 5 3 1 15 71 90 -8.958 -0.010 -7.612 -3.931 1.915 -4.629 -3.012 D 4 2 3 5 3 0 11 70 89 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 15 73 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 14 70 89 -8.958 -0.010 -7.612 -3.413 -4.841 1.932 -4.154 D 7 5 3 8 3 0 10 69 88 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 14 72 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - G - - - ML 9 8 3 11 3 1 13 69 88 -8.958 -0.010 -7.612 -3.413 -4.841 1.932 -4.154 D 10 8 3 11 3 0 10 68 87 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 13 71 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 1 12 68 87 -4.294 -0.083 -7.612 -2.485 1.632 -3.397 -0.674 D 13 11 3 14 3 0 9 66 85 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 12 69 88 -1.736 -0.613 -4.436 0.000 0.000 0.000 0.000 [ MATL 5 ] 6 - G - - - ML 15 14 3 17 3 1 11 66 85 -8.958 -0.141 -3.458 -0.167 -0.784 1.073 -1.235 D 16 14 3 17 3 0 9 65 84 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 12 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 7 - u - - - ML 18 17 3 20 3 1 11 65 84 -9.176 -0.011 -7.493 -0.538 -0.126 -0.558 0.779 D 19 17 3 20 3 0 8 64 83 -6.592 -0.327 -2.375 IL 20 20 3 20 3 1 10 66 85 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 62 - G - - MR 21 20 3 23 3 1 10 64 83 -9.300 -0.010 -7.618 -3.413 -4.841 1.932 -4.154 D 22 20 3 23 3 0 6 63 82 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 9 65 84 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 61 - G - - MR 24 23 3 26 3 1 9 63 82 -9.300 -0.010 -7.618 -3.413 -4.841 1.932 -4.154 D 25 23 3 26 3 0 5 62 81 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 8 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 60 - A - - MR 27 26 3 29 3 1 8 62 81 -9.300 -0.010 -7.618 1.810 -3.276 -1.907 -3.004 D 28 26 3 29 3 0 4 61 80 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 8 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 59 - A - - MR 30 29 3 32 3 1 7 61 80 -9.300 -0.010 -7.618 1.930 -4.274 -3.752 -3.986 D 31 29 3 32 3 0 4 60 79 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 7 62 81 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 58 - A - - MR 33 32 3 35 3 1 6 60 79 -9.300 -0.010 -7.618 1.848 -3.474 -2.306 -3.216 D 34 32 3 35 3 0 3 59 78 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 6 61 80 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 57 - G - - MR 36 35 3 38 3 1 5 59 78 -9.300 -0.125 -3.618 -3.413 -4.841 1.932 -4.154 D 37 35 3 38 3 0 3 58 77 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 5 60 79 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 56 - G - - MR 39 38 3 41 3 1 4 58 77 -1.817 -0.939 -2.361 -1.324 -1.600 1.505 -1.208 D 40 38 3 41 3 0 2 56 75 -7.544 -2.722 -0.246 IR 41 41 3 41 3 1 4 58 77 -2.514 -0.312 -5.690 0.000 0.000 0.000 0.000 [ MATR 14 ] - 53 - a - - MR 42 41 3 44 2 1 3 57 76 -9.006 -0.003 0.499 0.237 -1.313 0.009 D 43 41 3 44 2 0 2 56 75 -6.813 -0.013 IR 44 44 3 44 2 1 3 58 77 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 114 0 2 56 75 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 37 55 -0.029 -7.456 -6.863 -7.503 [ MATP 17 ] 8 32 G C - - MP 47 46 1 51 6 2 2 37 55 -9.600 -9.540 -0.015 -8.316 -8.596 -8.991 -5.324 -3.508 -5.370 -0.223 -6.349 -5.087 -1.428 -5.893 -4.941 3.693 -2.064 -0.177 -1.702 -4.832 -3.479 -4.300 ML 48 46 1 51 6 1 1 35 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 1 51 6 1 1 35 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 36 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 9 31 C G - - MP 53 52 6 57 6 2 2 35 53 -9.600 -9.540 -0.015 -8.316 -8.596 -8.991 -6.717 -6.807 -5.996 -2.995 -4.405 -6.123 3.896 -5.467 -6.224 -2.935 -6.137 -4.903 -1.228 -6.644 -2.277 -5.027 ML 54 52 6 57 6 1 1 33 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 33 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 34 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 10 30 C G - - MP 59 58 6 63 6 2 2 33 51 -9.600 -9.540 -0.015 -8.316 -8.596 -8.991 -6.717 -6.807 -5.996 -2.995 -4.405 -6.123 3.896 -5.467 -6.224 -2.935 -6.137 -4.903 -1.228 -6.644 -2.277 -5.027 ML 60 58 6 63 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 11 29 G C - - MP 65 64 6 69 6 2 2 31 49 -9.600 -9.540 -0.015 -8.316 -8.596 -8.991 -6.574 -4.011 -7.146 -1.132 -7.712 -5.374 -2.627 -7.316 -5.362 3.882 -5.610 -1.825 -2.988 -5.610 -4.815 -5.999 ML 66 64 6 69 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 12 28 C G - - MP 71 70 6 75 6 2 2 29 47 -9.600 -9.540 -0.015 -8.316 -8.596 -8.991 -6.717 -6.807 -5.996 -2.995 -4.405 -6.123 3.896 -5.467 -6.224 -2.935 -6.137 -4.903 -1.228 -6.644 -2.277 -5.027 ML 72 70 6 75 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 13 27 g c - - MP 77 76 6 81 4 2 2 27 45 -7.996 -8.203 -0.025 -6.617 -2.923 -2.630 -1.203 1.836 -2.959 -3.817 1.928 -3.284 -3.124 2.072 -3.626 -0.667 0.719 -3.106 -0.813 -2.105 ML 78 76 6 81 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 4 1 1 28 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 80 76 6 81 4 0 0 27 45 -4.568 -4.250 -2.265 -0.520 IL 81 81 5 81 4 1 1 29 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 82 82 6 82 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 14 - g - - - ML 83 82 6 85 3 1 1 24 42 -8.958 -0.010 -7.612 -0.819 -0.307 0.792 -0.163 D 84 82 6 85 3 0 0 23 42 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 15 - G - - - ML 86 85 3 88 3 1 1 23 41 -8.958 -0.010 -7.612 -0.787 -3.183 1.657 -2.676 D 87 85 3 88 3 0 0 22 41 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 16 - C - - - ML 89 88 3 91 3 1 1 22 40 -8.958 -0.010 -7.612 -3.931 1.915 -4.629 -3.012 D 90 88 3 91 3 0 0 21 40 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 17 - C - - - ML 92 91 3 94 3 1 1 20 39 -8.958 -0.010 -7.612 -3.931 1.915 -4.629 -3.012 D 93 91 3 94 3 0 0 20 39 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 18 - G - - - ML 95 94 3 97 3 1 1 19 37 -8.958 -0.010 -7.612 -3.413 -4.841 1.932 -4.154 D 96 94 3 97 3 0 0 19 37 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 19 - G - - - ML 98 97 3 100 3 1 1 18 36 -1.468 -0.659 -7.612 -0.618 -1.915 1.228 -0.434 D 99 97 3 100 3 0 0 16 34 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 17 36 -2.280 -0.369 -5.672 0.000 0.000 0.000 0.000 [ MATL 29 ] 22 - A - - - ML 101 100 3 103 3 1 1 16 34 -8.958 -0.052 -4.899 1.207 -0.967 -1.331 -0.353 D 102 100 3 103 3 0 0 16 34 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - A - - - ML 104 103 3 106 3 1 1 14 32 -1.751 -0.519 -7.570 1.779 -2.074 -2.696 -2.494 D 105 103 3 106 3 0 0 13 31 -6.781 -0.870 -1.173 IL 106 106 3 106 3 1 1 14 32 -2.659 -0.291 -5.359 0.000 0.000 0.000 0.000 [ MATL 31 ] 25 - c - - - ML 107 106 3 109 3 1 1 12 31 -8.958 -0.010 -7.612 -0.035 0.326 -0.497 0.086 D 108 106 3 109 3 0 0 13 32 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 26 - a - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 0.539 -0.610 0.448 -0.924 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 33 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 34 ] - - - - - - S 114 45 1 115 3 0 0 31 50 -8.958 -0.658 -1.457 IL 115 115 2 115 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 33 - a - - - ML 116 115 2 118 5 1 1 31 50 -7.405 -0.031 -7.220 -7.432 -8.324 0.272 -0.374 -0.032 0.061 D 117 115 2 118 5 0 0 30 48 -7.199 -0.137 -6.460 -4.835 -4.748 IL 118 118 3 118 5 1 1 31 50 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 34 52 g c - - MP 119 118 3 123 6 2 2 30 48 -9.600 -9.540 -0.015 -8.316 -8.596 -8.991 -3.076 -2.581 -3.140 1.237 -3.289 -3.908 0.706 -3.500 -0.448 2.606 -3.762 -0.211 1.489 -3.188 -1.104 -2.226 ML 120 118 3 123 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 121 118 3 123 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 122 118 3 123 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 123 123 5 123 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 124 124 6 124 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 35 51 g c - - MP 125 124 6 129 6 2 2 28 46 -9.600 -9.540 -0.015 -8.316 -8.596 -8.991 -2.841 -2.688 -2.958 0.709 -2.750 -3.768 2.009 -3.148 -1.140 2.219 -3.547 -0.452 0.934 -3.066 0.467 -2.033 ML 126 124 6 129 6 1 1 27 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 127 124 6 129 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 128 124 6 129 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 129 129 5 129 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 130 130 6 130 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 36 50 C G - - MP 131 130 6 135 6 2 2 26 44 -9.600 -9.540 -0.015 -8.316 -8.596 -8.991 -5.378 -5.420 -4.934 -1.513 -3.443 -5.246 3.565 -4.294 -4.974 -1.378 -5.207 -3.411 1.301 -5.350 -1.106 -3.768 ML 132 130 6 135 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 133 130 6 135 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 134 130 6 135 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 135 135 5 135 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 136 136 6 136 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 37 49 G C - - MP 137 136 6 141 6 2 2 24 42 -9.600 -9.540 -0.015 -8.316 -8.596 -8.991 -6.574 -4.011 -7.146 -1.132 -7.712 -5.374 -2.627 -7.316 -5.362 3.882 -5.610 -1.825 -2.988 -5.610 -4.815 -5.999 ML 138 136 6 141 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 6 141 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 6 141 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 38 48 G C - - MP 143 142 6 147 6 2 2 22 40 -9.600 -9.540 -0.015 -8.316 -8.596 -8.991 -6.574 -4.011 -7.146 -1.132 -7.712 -5.374 -2.627 -7.316 -5.362 3.882 -5.610 -1.825 -2.988 -5.610 -4.815 -5.999 ML 144 142 6 147 6 1 1 21 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 18 37 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 39 47 g c - - MP 149 148 6 153 4 2 2 20 38 -2.235 -8.203 -0.370 -6.617 -3.260 -2.797 -3.309 1.155 -3.179 -4.074 2.041 -3.518 -3.428 2.406 -3.899 -0.696 0.996 -2.086 -0.881 -2.315 ML 150 148 6 153 4 1 1 18 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 4 1 1 18 37 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 152 148 6 153 4 0 0 17 36 -4.568 -4.250 -2.265 -0.520 IL 153 153 5 153 4 1 1 19 38 -3.215 -0.473 -2.646 -6.384 0.000 0.000 0.000 0.000 IR 154 154 6 154 3 1 1 18 37 -2.390 -0.359 -5.090 0.000 0.000 0.000 0.000 [ MATL 42 ] 41 - c - - - ML 155 154 6 157 3 1 1 17 35 -8.958 -0.010 -7.612 -0.199 0.587 -0.781 0.063 D 156 154 6 157 3 0 0 17 35 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 42 - c - - - ML 158 157 3 160 3 1 1 15 34 -8.958 -0.010 -7.612 0.098 0.368 -0.478 -0.119 D 159 157 3 160 3 0 0 16 34 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 43 - u - - - ML 161 160 3 163 3 1 1 14 32 -8.958 -0.010 -7.612 -0.457 0.186 -0.450 0.487 D 162 160 3 163 3 0 0 14 33 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 44 - g - - - ML 164 163 3 166 3 1 1 12 31 -8.958 -0.424 -1.984 -0.314 -0.592 0.572 0.064 D 165 163 3 166 3 0 0 13 32 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 45 - u - - - ML 167 166 3 169 2 1 1 1 1 * 0.000 -0.303 -0.572 0.173 0.474 D 168 166 3 169 2 0 0 0 0 * 0.000 IL 169 169 3 169 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 47 ] - - - - - - E 170 169 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME M23 ACC RF03006 DESC M23 RNA LENG 54 MAXL 121 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 19:12:57 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 31 EFFN 9.827515 CKSUM 1987826663 STATS LOCAL MSV -7.8576 0.71930 STATS LOCAL VITERBI -8.9598 0.71930 STATS LOCAL FORWARD -3.3238 0.71930 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.75603 1.16327 0.90869 2.19143 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 0.00000 * 1 4.73597 0.03184 5.11729 4.10000 1 C - - : 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 2 4.33310 5.39633 0.02589 4.84107 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 3 4.33310 5.39633 0.02589 4.84107 3 G - - : 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 4 3.68279 0.19691 4.31094 1.96498 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.07172 2.78326 4.90944 0.22358 1.60771 1.09861 0.40547 5 1.58791 1.93713 0.53841 2.69035 6 G - - : 1.38629 1.38629 1.38629 1.38629 0.11682 4.90944 2.27421 1.46634 0.26236 1.09861 0.40547 6 1.93699 1.44975 1.76544 0.79824 7 u - - : 1.38629 1.38629 1.38629 1.38629 0.01645 4.80906 4.80906 1.46634 0.26236 0.13401 2.07609 7 3.37634 4.33093 0.06383 4.23300 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 8 5.16765 0.03255 5.13189 3.89106 9 C - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 9 5.14419 0.03289 5.11660 3.88593 10 C - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 10 3.79797 4.85291 0.03887 4.84023 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 11 5.11944 0.03326 5.10034 3.88041 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 12 1.20178 1.31708 1.15402 2.15367 13 g - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 13 2.29255 1.57263 0.71845 1.58971 14 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 14 2.00253 4.08826 0.19269 3.75076 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 15 4.73597 0.03184 5.11729 4.10000 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 16 4.73597 0.03184 5.11729 4.10000 17 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 17 4.33310 5.39633 0.02589 4.84107 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 18 1.98222 3.11354 0.44343 1.73750 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.53524 0.89871 4.90944 0.15808 1.92266 1.09861 0.40547 19 0.46893 2.16532 2.51300 1.72266 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04745 4.90944 3.24506 1.46634 0.26236 1.09861 0.40547 20 0.10757 2.95275 3.76261 3.62817 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.42211 1.08850 4.87734 0.04465 3.13125 0.32108 1.29231 21 1.45972 1.08238 1.73231 1.37818 25 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 22 0.97992 1.81724 0.98730 2.41233 26 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 23 2.38867 1.23520 1.14796 1.20334 27 g - - > 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 24 4.12793 5.23784 0.02879 4.96943 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 25 4.89078 0.04865 4.74279 3.46553 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 26 4.12879 5.23943 0.02875 4.97112 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 27 4.12632 5.23487 0.02885 4.96627 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 28 4.35692 0.14090 3.39912 2.46271 32 C - - > 1.38629 1.38629 1.38629 1.38629 0.53490 4.90944 0.89919 1.46634 0.26236 1.09861 0.40547 29 1.20046 1.64318 1.36679 1.38367 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.02488 4.39941 4.39941 1.46634 0.26236 0.03562 3.35272 30 1.83531 2.58223 0.60170 1.52808 34 G - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 31 2.30676 1.26703 0.88533 1.57905 35 g - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 32 4.16140 0.22114 4.03205 1.80136 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 33 3.78598 4.83195 0.03957 4.81117 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 34 3.78593 4.83186 0.03957 4.81105 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 35 1.89769 1.23504 0.92300 1.82055 39 g - - < 1.38629 1.38629 1.38629 1.38629 0.27219 1.46570 4.90944 0.06271 2.80044 1.09861 0.40547 36 1.60046 0.88571 1.96724 1.40269 41 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 37 1.34484 1.04426 1.72045 1.56791 42 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 38 1.86132 1.19451 1.68036 1.03458 43 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 39 1.72953 1.82708 0.89693 1.37069 44 g - - _ 1.38629 1.38629 1.38629 1.38629 0.18665 4.90944 1.81467 1.46634 0.26236 1.09861 0.40547 40 1.72380 1.83388 1.18320 1.03416 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.15092 2.02993 4.74041 0.12808 2.11845 0.08670 2.48832 41 2.08199 0.95477 1.16349 1.72584 47 c - - > 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 42 4.84161 0.04961 4.71419 3.45652 48 C - - > 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 43 4.82563 0.04993 4.70477 3.45351 49 C - - > 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 44 1.89872 4.15895 0.20525 3.90334 50 G - - > 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 45 1.95053 1.06146 0.98799 1.96949 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 46 1.36522 0.80706 2.38546 1.57764 52 c - - > 1.38629 1.38629 1.38629 1.38629 0.36206 4.90944 1.21611 1.46634 0.26236 1.09861 0.40547 47 1.00365 1.13755 2.53987 1.45252 53 a - - : 1.38629 1.38629 1.38629 1.38629 0.58448 0.83880 4.56835 0.17678 1.81993 0.40035 1.10891 48 2.66913 2.60591 0.26613 2.40225 56 G - - : 1.38629 1.38629 1.38629 1.38629 0.01631 4.81744 4.81744 1.46634 0.26236 0.14397 2.00924 49 4.33310 5.39633 0.02589 4.84107 57 G - - : 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 50 0.07103 4.33972 3.20144 4.21191 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 51 0.02439 5.03657 4.64749 4.82696 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 52 0.09432 4.19284 2.85113 4.06707 60 A - - : 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 53 4.33310 5.39633 0.02589 4.84107 61 G - - : 1.38629 1.38629 1.38629 1.38629 0.01486 4.90944 4.90944 1.46634 0.26236 1.09861 0.40547 54 4.33310 5.39633 0.02589 4.84107 62 G - - : 1.38629 1.38629 1.38629 1.38629 0.00746 4.90203 * 1.46634 0.26236 0.00000 * //