INFERNAL1/a [1.1.4 | Dec 2020] NAME GP20-b ACC RF03003 DESC GP20-b RNA STATES 195 NODES 59 CLEN 62 W 128 ALPH RNA RF no CONS yes MAP yes DATE Thu Dec 20 15:50:12 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 210 EFFN 71.088409 CKSUM 2824735036 NULL 0.000 0.000 0.000 0.000 GA 36.20 TC 36.60 NC 35.60 EFP7GF -18.5800 0.72224 ECMLC 0.69271 -7.93732 1.21110 1600000 678250 0.001769 ECMGC 0.34492 -23.17614 -9.81926 1600000 40077 0.009981 ECMLI 0.62401 -6.18865 3.30693 1600000 449286 0.002671 ECMGI 0.35741 -20.36254 -7.49225 1600000 39791 0.010053 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 128 208 -11.315 -11.522 -0.003 -9.937 IL 1 1 2 1 4 13 34 130 211 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 13 34 129 210 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - g - - - ML 3 2 3 5 3 15 33 128 209 -12.230 -0.001 -10.884 -1.225 -1.748 0.819 0.595 D 4 2 3 5 3 11 29 125 206 -6.174 -1.687 -0.566 IL 5 5 3 5 3 13 33 128 209 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 14 32 127 208 -12.230 -0.001 -10.884 -4.804 -2.226 1.812 -2.070 D 7 5 3 8 3 10 29 124 205 -6.174 -1.687 -0.566 IL 8 8 3 8 3 13 32 127 208 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - u - - - ML 9 8 3 11 3 13 32 126 207 -12.230 -0.001 -10.884 -0.787 0.660 -2.982 0.777 D 10 8 3 11 3 10 28 123 204 -6.174 -1.687 -0.566 IL 11 11 3 11 3 12 31 126 207 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - C - - - ML 12 11 3 14 3 12 31 125 206 -12.230 -0.038 -5.286 -4.021 1.706 -6.093 -0.596 D 13 11 3 14 3 10 28 122 203 -6.174 -1.687 -0.566 IL 14 14 3 14 3 12 31 125 206 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - a - - - ML 15 14 3 17 3 12 30 124 205 -12.193 -0.228 -2.777 0.368 -0.182 -0.183 -0.078 D 16 14 3 17 3 9 27 121 202 -8.625 -4.138 -0.088 IL 17 17 3 17 3 12 30 125 206 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - g - - - ML 18 17 3 20 3 12 29 123 204 -11.967 -0.300 -2.415 0.013 -1.607 0.852 -0.221 D 19 17 3 20 3 9 27 121 201 -11.113 -6.626 -0.015 IL 20 20 3 20 3 12 30 124 205 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - c - - - ML 21 20 3 23 3 12 29 123 203 -0.728 -1.339 -10.287 -0.275 0.169 0.128 -0.064 D 22 20 3 23 3 9 27 121 201 -10.787 -0.031 -5.584 IL 23 23 3 23 3 12 28 122 203 -2.366 -0.314 -9.111 0.000 0.000 0.000 0.000 [ MATR 8 ] - 82 - A - - MR 24 23 3 26 3 11 27 121 201 -12.523 -0.001 -10.841 1.995 -8.338 -7.596 -7.724 D 25 23 3 26 3 6 24 118 199 -6.987 -2.165 -0.379 IR 26 26 3 26 3 9 27 121 202 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 81 - U - - MR 27 26 3 29 3 10 26 120 200 -12.523 -0.001 -10.841 -2.790 -3.489 -5.854 1.907 D 28 26 3 29 3 6 23 118 199 -6.987 -0.831 -1.217 IR 29 29 3 29 3 8 26 120 201 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 80 - g - - MR 30 29 3 32 3 9 25 119 199 -12.528 -0.001 -10.846 -2.135 0.572 0.948 -1.487 D 31 29 3 32 3 6 22 117 197 -6.390 -1.568 -0.620 IR 32 32 3 32 3 8 25 119 200 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 79 - C - - MR 33 32 3 35 3 8 24 118 198 -12.528 -0.001 -10.846 -3.924 1.933 -6.684 -3.252 D 34 32 3 35 3 5 22 116 196 -6.390 -1.568 -0.620 IR 35 35 3 35 3 8 24 118 199 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 78 - G - - MR 36 35 3 38 3 7 23 117 197 -12.528 -0.001 -10.846 -0.335 -5.329 1.589 -2.524 D 37 35 3 38 3 5 21 115 196 -6.390 -1.568 -0.620 IR 38 38 3 38 3 7 23 117 198 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 77 - A - - MR 39 38 3 41 3 6 22 116 196 -3.153 -1.053 -1.302 1.747 -0.995 -5.508 -3.050 D 40 38 3 41 3 5 21 114 195 -6.390 -1.568 -0.620 IR 41 41 3 41 3 7 23 116 197 -1.777 -0.509 -7.539 0.000 0.000 0.000 0.000 [ MATR 14 ] - 74 - A - - MR 42 41 3 44 3 6 22 115 196 -11.779 -0.002 -10.097 1.420 0.047 -4.615 -1.992 D 43 41 3 44 3 5 21 114 195 -12.341 -0.016 -6.571 IR 44 44 3 44 3 5 21 115 196 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 73 - A - - MR 45 44 3 47 3 5 21 114 195 -12.528 -0.001 -10.846 1.960 -6.684 -4.719 -4.006 D 46 44 3 47 3 1 18 112 192 -6.390 -1.568 -0.620 IR 47 47 3 47 3 4 21 114 195 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 72 - A - - MR 48 47 3 50 3 4 20 113 194 -12.528 -0.001 -10.846 1.945 -3.618 -6.163 -4.198 D 49 47 3 50 3 1 17 111 191 -6.390 -1.568 -0.620 IR 50 50 3 50 3 4 20 113 194 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 71 - A - - MR 51 50 3 53 3 3 19 112 193 -12.528 -0.001 -10.846 1.605 -1.790 -3.303 -0.819 D 52 50 3 53 3 1 16 110 191 -6.390 -1.568 -0.620 IR 53 53 3 53 3 3 19 112 193 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 70 - A - - MR 54 53 3 56 3 2 18 111 192 -12.528 -0.001 -10.846 1.928 -6.057 -3.873 -3.151 D 55 53 3 56 3 1 16 109 190 -6.390 -1.568 -0.620 IR 56 56 3 56 3 2 18 111 192 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 69 - U - - MR 57 56 3 59 2 1 17 110 191 -2.648 -0.251 -8.622 -7.700 -9.724 1.997 D 58 56 3 59 2 0 16 109 189 -4.432 -0.068 IR 59 59 3 59 2 1 17 110 191 -2.702 -0.241 0.000 0.000 0.000 0.000 [ BIF 20 ] - - - - - - B 60 59 3 61 123 0 16 109 189 [ BEGL 21 ] - - - - - - S 61 60 1 62 4 0 0 31 49 -0.025 -10.282 -6.991 -6.866 [ MATP 22 ] 10 31 g c - - MP 62 61 1 66 6 2 2 31 49 -12.174 -12.113 -0.003 -10.889 -11.169 -11.564 -5.115 -3.512 -1.730 -1.357 -4.822 -6.089 2.385 -5.305 -2.187 2.423 -2.035 -1.589 1.585 -5.392 -0.599 -4.268 ML 63 61 1 66 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 1 66 6 1 1 29 48 -7.696 -6.425 -1.327 -6.403 -0.910 -4.617 0.460 0.002 -0.703 0.012 D 65 61 1 66 6 0 0 28 46 -10.112 -8.810 -1.927 -5.289 -1.623 -1.382 IL 66 66 5 66 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 11 30 c g - - MP 68 67 6 72 6 2 2 29 47 -12.183 -12.122 -0.007 -10.899 -8.240 -11.574 -6.396 -6.092 -3.464 2.039 -5.380 -7.243 2.416 -6.008 -6.298 1.594 -6.809 -2.965 1.475 -6.575 -1.311 -5.043 ML 69 67 6 72 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 27 46 -7.781 -6.510 -0.713 -6.488 -1.622 -4.702 0.001 -0.147 0.161 -0.031 D 71 67 6 72 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 12 29 g c - - MP 74 73 6 78 6 2 2 27 45 -12.190 -12.129 -0.013 -10.906 -11.185 -7.030 -1.007 -4.242 -4.352 0.876 -1.687 -5.186 1.458 -4.671 -2.395 2.649 -2.861 -1.977 -0.269 -4.475 1.393 -3.563 ML 75 73 6 78 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 25 44 -7.344 -6.073 -1.083 -6.051 -1.185 -4.265 0.915 -0.785 -0.521 -0.257 D 77 73 6 78 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 13 28 c g - - MP 80 79 6 84 6 2 2 25 43 -12.183 -12.123 -0.002 -10.899 -11.179 -11.574 0.395 -2.364 -2.302 1.088 -0.159 -4.601 2.119 -4.100 -0.650 1.035 -4.390 -1.900 1.362 -3.890 0.018 -2.538 ML 81 79 6 84 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 21 40 -10.085 -8.783 -4.580 -5.262 -5.280 -0.147 IL 84 84 5 84 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 14 27 a u - - MP 86 85 6 90 4 2 2 23 41 -2.607 -3.869 -0.389 -8.029 1.173 0.929 0.647 1.360 -1.654 -0.769 0.701 -1.349 -0.381 -0.046 -0.425 -1.473 -0.028 -1.207 -2.004 -1.830 ML 87 85 6 90 4 1 1 22 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 4 1 1 22 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 89 85 6 90 4 0 0 21 39 -5.555 -5.236 -0.736 -1.507 IL 90 90 5 90 4 1 1 22 40 -5.657 -1.393 -0.744 -8.825 0.000 0.000 0.000 0.000 IR 91 91 6 91 3 1 1 21 40 -4.218 -0.092 -6.918 0.000 0.000 0.000 0.000 [ MATL 27 ] 16 - G - - - ML 92 91 6 94 3 1 1 20 39 -12.226 -0.001 -10.880 -1.063 -6.136 1.785 -4.034 D 93 91 6 94 3 0 0 21 40 -6.752 -0.894 -1.143 IL 94 94 3 94 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 17 - g - - - ML 95 94 3 97 3 1 1 19 37 -12.230 -0.001 -10.884 0.670 -3.666 0.815 -0.807 D 96 94 3 97 3 0 0 20 39 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 18 - C - - - ML 98 97 3 100 3 1 1 18 36 -12.230 -0.001 -10.884 -6.275 1.881 -2.237 -3.452 D 99 97 3 100 3 0 0 19 38 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 19 - G - - - ML 101 100 3 103 3 1 1 17 35 -12.230 -0.001 -10.884 -4.651 0.743 1.081 -2.544 D 102 100 3 103 3 0 0 18 37 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 20 - U - - - ML 104 103 3 106 3 1 1 16 34 -12.230 -0.001 -10.884 -8.622 -7.700 -9.724 1.997 D 105 103 3 106 3 0 0 17 36 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 21 - A - - - ML 107 106 3 109 3 1 1 14 33 -12.230 -0.001 -10.884 1.684 -3.948 -2.893 -0.768 D 108 106 3 109 3 0 0 16 35 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 22 - A - - - ML 110 109 3 112 3 1 1 13 31 -12.230 -0.001 -10.884 1.842 -2.065 -3.662 -3.365 D 111 109 3 112 3 0 0 15 34 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 23 - A - - - ML 113 112 3 115 3 1 1 12 30 -12.230 -0.001 -10.884 1.662 -1.170 -2.342 -2.373 D 114 112 3 115 3 0 0 14 33 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 24 - A - - - ML 116 115 3 118 3 1 1 10 29 -12.230 -0.618 -1.522 1.898 -2.546 -3.659 -5.491 D 117 115 3 118 3 0 0 13 32 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 25 - g - - - ML 119 118 3 121 2 1 1 1 1 * 0.000 0.225 0.188 0.504 -1.870 D 120 118 3 121 2 0 0 0 0 * 0.000 IL 121 121 3 121 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 122 121 3 -1 0 0 0 0 0 [ BEGR 38 ] - - - - - - S 123 60 1 124 3 0 6 89 169 -12.230 -0.001 -10.884 IL 124 124 2 124 3 1 4 90 171 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 32 - a - - - ML 125 124 2 127 3 1 6 89 169 -12.230 -0.001 -10.884 0.990 -1.462 0.251 -1.117 D 126 124 2 127 3 0 0 86 167 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 4 89 170 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 33 - a - - - ML 128 127 3 130 3 1 5 88 168 -12.230 -0.001 -10.884 0.526 -0.224 0.228 -0.907 D 129 127 3 130 3 0 0 85 166 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 3 88 169 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 34 - c - - - ML 131 130 3 133 3 1 4 87 167 -12.230 -0.001 -10.884 0.391 0.614 -0.862 -0.716 D 132 130 3 133 3 0 0 84 165 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 2 87 168 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 35 - g - - - ML 134 133 3 136 3 1 3 86 166 -12.230 -0.001 -10.884 -0.066 -0.190 0.483 -0.377 D 135 133 3 136 3 0 0 83 164 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 2 86 167 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 36 - g - - - ML 137 136 3 139 3 1 2 85 165 -12.230 -0.005 -8.339 0.027 0.083 0.241 -0.434 D 138 136 3 139 3 0 0 81 162 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 2 85 166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 37 - a - - - ML 140 139 3 142 3 1 1 84 164 -12.226 -0.607 -1.542 0.759 0.321 -1.075 -0.775 D 141 139 3 142 3 0 0 79 160 -6.715 -2.228 -0.364 IL 142 142 3 142 3 1 1 86 166 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 38 - a - - - ML 143 142 3 145 5 1 1 84 165 -1.240 -0.799 -10.385 -10.597 -11.489 0.517 -0.499 -0.772 0.351 D 144 142 3 145 5 0 0 76 156 -3.773 -0.127 -9.370 -7.745 -7.658 IL 145 145 3 145 5 1 1 87 168 -0.329 -2.303 -10.308 -12.140 -11.414 0.000 0.000 0.000 0.000 [ MATP 46 ] 49 66 G C - - MP 146 145 3 150 6 2 2 27 45 -12.194 -12.133 -0.002 -10.910 -11.190 -11.585 -6.665 -5.358 1.579 -0.106 -7.153 -7.075 0.439 -6.994 -6.852 3.052 -2.401 -2.991 -2.780 -6.386 0.904 -5.420 ML 147 145 3 150 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 3 150 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 3 150 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 50 65 G C - - MP 152 151 6 156 6 2 2 24 43 -12.194 -12.133 -0.002 -10.910 -11.190 -11.585 -9.696 -6.734 -10.739 -4.053 -10.649 -7.962 -0.738 -10.649 -8.082 3.890 -8.295 -2.548 -1.676 -8.341 -7.766 -9.637 ML 153 151 6 156 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 22 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 24 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 48 ] 51 64 u a - - MP 158 157 6 162 6 2 2 22 41 -12.194 -12.133 -0.002 -10.910 -11.190 -11.585 -6.916 -6.136 -6.823 1.865 -6.173 -7.560 0.851 -6.653 -6.861 2.200 -7.277 -3.730 2.510 -6.936 -3.623 -5.552 ML 159 157 6 162 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 22 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 21 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 23 41 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 22 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 49 ] 52 63 G C - - MP 164 163 6 168 4 2 2 20 39 -11.315 -2.271 -0.337 -9.937 -7.860 -6.085 -7.823 -2.770 -8.421 -7.585 1.174 -8.279 -2.964 3.693 -3.897 -2.656 -4.008 -7.323 -2.372 -6.765 ML 165 163 6 168 4 1 1 22 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 20 38 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 23 40 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 19 38 -4.793 -0.061 -7.493 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - A - - - ML 170 169 6 172 3 1 1 18 37 -12.230 -0.094 -3.985 1.494 -3.346 0.046 -4.239 D 171 169 6 172 3 0 0 19 38 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 24 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - a - - - ML 173 172 3 175 3 1 1 17 35 -12.137 -0.837 -1.185 0.298 -0.047 -0.774 0.284 D 174 172 3 175 3 0 0 16 35 -9.775 -5.288 -0.039 IL 175 175 3 175 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - g - - - ML 176 175 3 178 3 1 1 16 34 -1.517 -0.623 -9.956 -0.379 -0.649 0.635 0.058 D 177 175 3 178 3 0 0 15 33 -12.590 -0.012 -6.982 IL 178 178 3 178 3 1 1 16 34 -4.643 -0.068 -7.343 0.000 0.000 0.000 0.000 [ MATL 53 ] 57 - G - - - ML 179 178 3 181 3 1 1 14 33 -12.230 -0.001 -10.884 -6.838 -8.607 1.994 -7.599 D 180 178 3 181 3 0 0 17 35 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - C - - - ML 182 181 3 184 3 1 1 13 32 -12.230 -0.001 -10.884 -1.802 1.497 -5.553 -0.200 D 183 181 3 184 3 0 0 16 34 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - a - - - ML 185 184 3 187 3 1 1 12 30 -12.230 -0.001 -10.884 0.654 -2.391 0.359 -0.069 D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - A - - - ML 188 187 3 190 3 1 1 10 29 -12.230 -0.001 -10.884 1.995 -8.343 -7.601 -7.729 D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - C - - - ML 191 190 3 193 2 1 1 1 1 * 0.000 -0.922 1.787 -7.134 -6.094 D 192 190 3 193 2 0 0 0 0 * 0.000 IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 58 ] - - - - - - E 194 193 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME GP20-b ACC RF03003 DESC GP20-b RNA LENG 62 MAXL 132 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Dec 20 15:50:12 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 210 EFFN 202.338409 CKSUM 2824735036 STATS LOCAL MSV -8.2840 0.72224 STATS LOCAL VITERBI -9.0883 0.72224 STATS LOCAL FORWARD -3.0428 0.72224 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.12945 1.40927 1.33876 1.77021 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 0.00000 * 1 2.35402 2.69116 0.79449 0.95347 1 g - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 2 6.14981 2.93391 0.12062 2.84206 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 3 1.96009 0.92094 3.64199 0.83285 3 u - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 4 4.47748 0.19728 6.67098 1.79329 4 C - - : 1.38629 1.38629 1.38629 1.38629 0.02680 7.66011 3.65087 1.46634 0.26236 1.09861 0.40547 5 1.12731 1.50165 1.50120 1.46762 5 a - - : 1.38629 1.38629 1.38629 1.38629 0.16090 7.63429 1.90961 1.46634 0.26236 4.04489 0.01767 6 1.38652 2.59763 0.76392 1.56173 6 g - - : 1.38629 1.38629 1.38629 1.38629 0.21255 7.47452 1.65596 1.46634 0.26236 5.89286 0.00276 7 1.63032 1.23576 1.26325 1.46627 7 c - - : 1.38629 1.38629 1.38629 1.38629 0.96500 0.49224 4.85905 0.21780 1.63111 0.01402 4.27400 8 3.34556 1.08926 0.90898 1.49006 10 g - - < 1.38629 1.38629 1.38629 1.38629 0.00440 7.65170 5.54327 1.46634 0.26236 0.86895 0.54368 9 1.29232 1.08870 1.62295 1.65340 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.00410 7.65193 5.62263 1.46634 0.26236 0.10369 2.31778 10 1.94995 1.66747 0.78687 1.54306 12 g - - < 1.38629 1.38629 1.38629 1.38629 0.00898 7.65700 4.77157 1.46634 0.26236 0.23338 1.56952 11 1.41847 1.05466 1.70717 1.47742 13 c - - < 1.38629 1.38629 1.38629 1.38629 0.00095 7.65211 7.65211 1.46634 0.26236 2.99128 0.05153 12 0.57115 1.75297 1.77325 2.38502 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.18576 1.79443 5.71138 0.00571 5.16910 0.10586 2.29814 13 2.11261 6.89381 0.14430 4.38722 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00095 7.65730 7.65730 1.46634 0.26236 0.25247 1.50006 14 0.90527 4.37524 0.81356 1.96823 17 g - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 15 6.75366 0.08164 2.88571 3.84383 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 16 6.14851 0.84005 0.63720 3.28590 19 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 17 8.83061 7.97504 9.79457 0.00055 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 18 0.21167 4.47794 3.48187 1.90607 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 19 0.09982 2.84607 4.08632 3.90555 22 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 20 0.22669 2.19409 3.05253 3.12056 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 21 0.06352 3.16120 4.05424 6.31033 24 A - - _ 1.38629 1.38629 1.38629 1.38629 0.43693 7.66011 1.03984 1.46634 0.26236 1.09861 0.40547 22 1.22991 1.21199 1.01328 3.05654 25 g - - _ 1.38629 1.38629 1.38629 1.38629 0.24773 1.57801 4.33922 0.00704 4.95912 0.00266 5.92979 23 1.29369 1.38043 1.36428 1.52002 27 a - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65211 7.65211 1.46634 0.26236 2.99128 0.05153 24 1.03935 1.96708 1.02623 1.90991 28 g - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65211 7.65211 1.46634 0.26236 0.10586 2.29814 25 2.31495 0.85217 1.03763 2.11656 29 c - - > 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 26 1.76911 1.64699 1.01412 1.29402 30 g - - > 1.38629 1.38629 1.38629 1.38629 0.00925 7.66011 4.74058 1.46634 0.26236 1.09861 0.40547 27 1.59863 1.02221 0.89954 3.46509 31 g - - > 1.38629 1.38629 1.38629 1.38629 0.00095 7.65182 7.65182 1.46634 0.26236 0.10248 2.32887 28 0.67890 2.46457 1.19094 2.26487 32 A - - - 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 29 1.01088 1.53072 1.20441 2.12152 33 a - - - 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 30 1.10859 0.92796 2.00478 1.96661 34 c - - - 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 31 1.45232 1.50613 1.02021 1.69451 35 g - - - 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 32 1.38245 1.30724 1.19273 1.74251 36 g - - - 1.38629 1.38629 1.38629 1.38629 0.00355 7.66011 5.78595 1.46634 0.26236 1.09861 0.40547 33 0.84140 1.13666 2.16944 2.01168 37 a - - - 1.38629 1.38629 1.38629 1.38629 0.39022 7.65751 1.13128 1.46634 0.26236 2.14188 0.12492 34 1.01128 1.74265 1.95525 1.14049 38 a - - - 1.38629 1.38629 1.38629 1.38629 0.61773 0.77623 7.26869 1.61412 0.22198 0.00290 5.84403 35 1.38343 2.48196 0.62111 2.05294 49 G - - < 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 36 6.35908 3.24288 0.06312 3.89263 50 G - - < 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 37 1.45013 2.27003 1.23593 0.98998 51 u - - < 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 38 6.30564 1.92032 0.17548 4.37716 52 G - - < 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 39 0.34818 3.80637 1.34017 4.60542 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06670 7.66011 2.74798 1.46634 0.26236 1.09861 0.40547 40 1.17911 1.40284 1.94566 1.19186 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.59344 7.59442 0.80503 1.46634 0.26236 4.92674 0.00728 41 1.72784 1.85657 0.89002 1.36462 55 g - - _ 1.38629 1.38629 1.38629 1.38629 0.44843 1.02037 7.00280 0.00504 5.29331 0.00195 6.23959 42 7.11258 8.34106 0.00154 7.63914 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 43 2.68777 0.33477 6.25440 1.53926 58 C - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 44 0.91706 3.28336 1.11304 1.45138 59 a - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 45 0.00126 8.13275 7.60286 7.67842 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 46 1.97753 0.15094 7.49450 6.78099 61 C - - _ 1.38629 1.38629 1.38629 1.38629 0.23594 1.56206 7.66011 0.00449 5.40850 1.09861 0.40547 47 4.70287 0.19836 1.81717 4.78306 63 C - - > 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 48 0.99319 1.23915 2.25978 1.44560 64 a - - > 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 49 3.89280 0.07318 3.24083 4.50581 65 C - - > 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 50 5.88896 0.64677 0.85500 3.03212 66 C - - > 1.38629 1.38629 1.38629 1.38629 0.17602 1.82681 7.66011 0.16112 1.90509 1.09861 0.40547 51 8.83061 7.97504 9.79457 0.00055 69 U - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 52 0.04563 6.76400 4.16466 3.57845 70 A - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 53 0.26461 2.66437 3.85326 1.95446 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 54 0.03247 3.95061 6.72936 4.46453 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 55 0.02489 7.20223 4.77990 4.17078 73 A - - : 1.38629 1.38629 1.38629 1.38629 0.53385 7.66011 0.88386 1.46634 0.26236 1.09861 0.40547 56 0.39918 1.31021 5.66635 2.88407 74 A - - : 1.38629 1.38629 1.38629 1.38629 0.21869 1.63153 7.12787 0.35446 1.20916 0.00228 6.08539 57 0.16901 2.06179 6.23003 3.63818 77 A - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 58 1.61010 6.19749 0.27711 3.21572 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 59 4.16331 0.04239 7.00457 3.68714 79 C - - : 1.38629 1.38629 1.38629 1.38629 0.00094 7.66011 7.66011 1.46634 0.26236 1.09861 0.40547 60 3.03947 0.95568 0.72323 2.49609 80 g - - : 1.38629 1.38629 1.38629 1.38629 0.00443 7.66011 5.53441 1.46634 0.26236 1.09861 0.40547 61 3.39722 4.00577 6.44361 0.05474 81 U - - : 1.38629 1.38629 1.38629 1.38629 0.00095 7.65663 7.65663 1.46634 0.26236 2.33976 0.10131 62 0.00126 8.12946 7.59958 7.67517 82 A - - : 1.38629 1.38629 1.38629 1.38629 0.00047 7.65616 * 1.46634 0.26236 0.00000 * //