INFERNAL1/a [1.1.4 | Dec 2020] NAME hya ACC RF02992 DESC hya RNA STATES 225 NODES 66 CLEN 72 W 102 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 21:41:34 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 27 EFFN 2.514771 CKSUM 1386412174 NULL 0.000 0.000 0.000 0.000 GA 56.80 TC 56.80 NC 48.30 EFP7GF -8.8187 0.71884 ECMLC 0.61684 -8.40350 0.94209 1600000 382634 0.003136 ECMGC 0.35638 -19.23721 -4.34063 1600000 80852 0.004947 ECMLI 0.50668 -8.29389 2.35967 1600000 265153 0.004526 ECMGI 0.39749 -13.31868 -0.69498 1600000 60428 0.006619 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 102 140 -7.170 -7.377 -0.045 -5.791 IL 1 1 2 1 4 3 31 105 143 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 2 30 104 142 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - A - - - ML 3 2 3 5 3 3 30 103 140 -8.171 -0.018 -6.825 1.102 -1.248 -0.506 -0.458 D 4 2 3 5 3 0 26 101 138 -6.174 -1.687 -0.566 IL 5 5 3 5 3 2 29 103 141 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 3 29 102 139 -8.549 -0.016 -6.867 -0.898 -1.858 1.506 -1.527 D 7 5 3 8 3 0 25 100 138 -5.620 -0.734 -1.403 IL 8 8 3 8 3 2 28 102 140 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 84 - g - - MR 9 8 3 11 3 2 28 101 138 -8.549 -0.016 -6.867 0.234 -0.723 0.353 -0.088 D 10 8 3 11 3 0 23 98 136 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 27 101 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 83 - a - - MR 12 11 3 14 3 2 27 100 137 -8.549 -0.016 -6.867 0.613 -0.631 0.140 -0.469 D 13 11 3 14 3 0 23 98 135 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 27 100 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 82 - c - - MR 15 14 3 17 3 2 26 99 136 -8.549 -0.016 -6.867 -0.404 0.768 -1.459 0.236 D 16 14 3 17 3 0 22 97 134 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 26 99 137 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 81 - G - - MR 18 17 3 20 3 2 25 98 135 -8.549 -0.016 -6.867 -0.787 -2.410 1.562 -1.834 D 19 17 3 20 3 0 21 96 133 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 25 98 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 80 - u - - MR 21 20 3 23 3 2 24 97 134 -8.549 -0.016 -6.867 -0.483 -0.778 -0.237 0.890 D 22 20 3 23 3 0 20 95 132 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 24 97 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 79 - c - - MR 24 23 3 26 3 1 23 96 133 -8.549 -0.016 -6.867 -1.001 0.979 -1.830 0.320 D 25 23 3 26 3 0 20 94 131 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 23 96 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 78 - G - - MR 27 26 3 29 3 1 22 95 132 -8.549 -0.016 -6.867 -1.188 -2.140 1.527 -1.142 D 28 26 3 29 3 0 19 93 130 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 22 95 133 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 77 - A - - MR 30 29 3 32 3 1 21 94 131 -8.549 -0.016 -6.867 1.795 -2.792 -2.382 -2.377 D 31 29 3 32 3 0 18 92 129 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 21 94 132 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 76 - A - - MR 33 32 3 35 3 1 20 93 130 -8.549 -0.016 -6.867 1.499 -1.918 -0.888 -1.442 D 34 32 3 35 3 0 18 91 128 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 20 93 131 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 75 - A - - MR 36 35 3 38 3 1 19 92 129 -8.549 -0.016 -6.867 1.241 -0.981 -0.833 -0.816 D 37 35 3 38 3 0 17 90 128 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 20 92 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 74 - G - - MR 39 38 3 41 3 1 18 91 128 -8.549 -0.016 -6.867 -2.017 -3.300 1.806 -2.687 D 40 38 3 41 3 0 17 89 127 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 19 91 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 73 - G - - MR 42 41 3 44 2 1 17 90 127 -8.602 -0.004 -1.250 -2.749 1.682 -2.164 D 43 41 3 44 2 0 17 89 126 -4.432 -0.068 IR 44 44 3 44 2 1 18 90 128 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 159 0 16 89 126 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 52 72 -0.041 -6.950 -6.357 -6.997 [ MATP 17 ] 3 39 C G - - MP 47 46 1 51 6 2 3 52 72 -9.196 -9.135 -0.020 -7.912 -8.192 -8.587 -4.314 -4.299 -4.045 -0.502 -2.766 -4.481 3.376 -3.559 -4.076 -0.305 -4.380 -2.298 0.811 -4.382 0.507 -2.913 ML 48 46 1 51 6 1 1 51 70 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 1 51 6 1 1 50 70 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 48 68 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 52 71 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 51 71 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 4 38 G C - - MP 53 52 6 57 6 2 3 50 70 -9.196 -9.135 -0.020 -7.912 -8.192 -8.587 -3.961 -1.090 -3.945 0.787 -4.679 -4.390 -0.125 -4.425 -3.974 3.327 -4.325 0.349 -0.390 -3.810 -2.079 -2.905 ML 54 52 6 57 6 1 1 49 68 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 48 68 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 46 66 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 50 69 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 49 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 5 37 c g - - MP 59 58 6 63 6 2 3 48 68 -9.196 -9.135 -0.020 -7.912 -8.192 -8.587 -2.830 -1.866 -2.936 0.810 -2.447 -3.752 2.408 -2.946 -2.945 1.355 -3.471 -0.801 1.709 -3.077 0.000 -1.914 ML 60 58 6 63 6 1 1 47 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 47 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 44 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 48 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 47 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 6 36 C G - - MP 65 64 6 69 6 2 2 46 66 -9.196 -9.135 -0.020 -7.912 -8.192 -8.587 -4.128 -4.095 -3.914 -0.295 -2.699 -4.401 3.257 -3.465 -3.932 -0.087 -4.271 -2.073 1.257 -4.221 0.339 -2.775 ML 66 64 6 69 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 45 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 46 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 45 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 7 35 g c - - MP 71 70 6 75 6 2 2 44 64 -9.196 -9.135 -0.020 -7.912 -8.192 -8.587 -3.627 -2.536 -3.631 2.082 -4.255 -4.458 0.214 -3.996 -3.691 2.860 -4.125 0.277 -0.059 -3.718 -1.736 -2.544 ML 72 70 6 75 6 1 1 43 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 43 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 41 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 44 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 44 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 8 34 C G - - MP 77 76 6 81 4 2 2 42 62 -7.170 -7.377 -0.045 -5.791 -4.407 -4.386 -4.125 -0.576 -2.831 -4.551 3.434 -3.633 -4.159 -0.369 -4.454 -2.374 0.924 -4.468 -0.042 -2.991 ML 78 76 6 81 4 1 1 43 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 4 1 1 42 62 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 80 76 6 81 4 0 0 41 61 -4.568 -4.250 -2.265 -0.520 IL 81 81 5 81 4 1 1 44 64 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 82 82 6 82 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 9 - G - - - ML 83 82 6 85 3 1 1 40 59 -8.171 -0.018 -6.825 -0.429 -2.162 1.433 -1.587 D 84 82 6 85 3 0 0 38 58 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 10 - C - - - ML 86 85 3 88 3 1 1 39 58 -8.171 -0.018 -6.825 -1.702 1.557 -2.544 -0.787 D 87 85 3 88 3 0 0 37 57 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 11 - A - - - ML 89 88 3 91 3 1 1 38 57 -8.171 -0.018 -6.825 1.795 -2.792 -2.382 -2.377 D 90 88 3 91 3 0 0 36 56 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 12 - A - - - ML 92 91 3 94 3 1 1 36 56 -8.171 -0.018 -6.825 1.531 -1.970 -0.996 -1.502 D 93 91 3 94 3 0 0 35 55 -6.174 -1.687 -0.566 IL 94 94 3 94 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 13 - G - - - ML 95 94 3 97 3 1 1 35 55 -8.171 -0.018 -6.825 -2.017 -3.300 1.806 -2.687 D 96 94 3 97 3 0 0 34 53 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 14 - U - - - ML 98 97 3 100 3 1 1 34 53 -8.171 -0.018 -6.825 -1.473 -1.207 -2.214 1.581 D 99 97 3 100 3 0 0 33 52 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 15 - G - - - ML 101 100 3 103 3 1 1 33 52 -8.171 -0.018 -6.825 -2.017 -3.300 1.806 -2.687 D 102 100 3 103 3 0 0 32 51 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 16 - G - - - ML 104 103 3 106 3 1 1 32 51 -8.171 -0.018 -6.825 -1.455 -2.508 1.649 -1.630 D 105 103 3 106 3 0 0 31 50 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 17 - G - - - ML 107 106 3 109 3 1 1 31 50 -8.171 -0.018 -6.825 -2.017 -3.300 1.806 -2.687 D 108 106 3 109 3 0 0 30 49 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 18 - C - - - ML 110 109 3 112 3 1 1 30 49 -8.171 -0.018 -6.825 -2.250 1.737 -3.082 -1.563 D 111 109 3 112 3 0 0 29 48 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 32 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 19 - C - - - ML 113 112 3 115 3 1 1 29 48 -8.171 -0.018 -6.825 -2.250 1.737 -3.082 -1.563 D 114 112 3 115 3 0 0 28 47 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 31 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 20 - G - - - ML 116 115 3 118 3 1 1 28 47 -8.171 -0.018 -6.825 -2.017 -3.300 1.806 -2.687 D 117 115 3 118 3 0 0 27 46 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 30 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 21 - A - - - ML 119 118 3 121 3 1 1 27 46 -8.171 -0.018 -6.825 1.795 -2.792 -2.382 -2.377 D 120 118 3 121 3 0 0 26 45 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 22 - g - - - ML 122 121 3 124 3 1 1 26 44 -8.171 -0.018 -6.825 0.008 -0.048 0.080 -0.044 D 123 121 3 124 3 0 0 25 44 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 23 - G - - - ML 125 124 3 127 3 1 1 24 43 -8.171 -0.018 -6.825 -0.818 -1.768 1.471 -1.448 D 126 124 3 127 3 0 0 23 42 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 24 - G - - - ML 128 127 3 130 3 1 1 23 42 -8.171 -0.018 -6.825 -1.073 -1.981 1.457 -0.928 D 129 127 3 130 3 0 0 22 41 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 25 - U - - - ML 131 130 3 133 3 1 1 22 41 -8.171 -0.018 -6.825 -1.147 -1.266 -1.610 1.488 D 132 130 3 133 3 0 0 21 40 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 26 - C - - - ML 134 133 3 136 3 1 1 21 40 -8.171 -0.018 -6.825 -2.250 1.737 -3.082 -1.563 D 135 133 3 136 3 0 0 20 39 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 27 - G - - - ML 137 136 3 139 3 1 1 20 38 -8.171 -0.018 -6.825 -2.017 -3.300 1.806 -2.687 D 138 136 3 139 3 0 0 19 38 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 28 - A - - - ML 140 139 3 142 3 1 1 19 37 -8.171 -0.018 -6.825 1.795 -2.792 -2.382 -2.377 D 141 139 3 142 3 0 0 18 37 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 29 - C - - - ML 143 142 3 145 3 1 1 17 36 -8.171 -0.018 -6.825 -2.250 1.737 -3.082 -1.563 D 144 142 3 145 3 0 0 17 36 -6.174 -1.687 -0.566 IL 145 145 3 145 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 30 - U - - - ML 146 145 3 148 3 1 1 16 35 -8.171 -0.018 -6.825 -1.454 -1.175 -2.195 1.572 D 147 145 3 148 3 0 0 16 34 -6.174 -1.687 -0.566 IL 148 148 3 148 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 31 - C - - - ML 149 148 3 151 3 1 1 15 33 -8.171 -0.018 -6.825 -2.250 1.737 -3.082 -1.563 D 150 148 3 151 3 0 0 15 33 -6.174 -1.687 -0.566 IL 151 151 3 151 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 32 - C - - - ML 152 151 3 154 3 1 1 13 31 -8.171 -0.018 -6.825 -2.250 1.737 -3.082 -1.563 D 153 151 3 154 3 0 0 13 32 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 33 - G - - - ML 155 154 3 157 2 1 1 1 1 * 0.000 -0.718 -1.482 1.123 -0.223 D 156 154 3 157 2 0 0 0 0 * 0.000 IL 157 157 3 157 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 158 157 3 -1 0 0 0 0 0 [ BEGR 49 ] - - - - - - S 159 45 1 160 3 0 0 52 89 -2.016 -0.427 -6.825 IL 160 160 2 160 3 1 1 53 90 -2.167 -0.428 -4.867 0.000 0.000 0.000 0.000 [ MATL 50 ] 41 - c - - - ML 161 160 2 163 3 1 1 51 89 -8.171 -0.018 -6.825 -0.228 0.875 -1.059 -0.266 D 162 160 2 163 3 0 0 49 87 -6.174 -1.687 -0.566 IL 163 163 3 163 3 1 1 52 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 42 - A - - - ML 164 163 3 166 5 1 1 50 88 -7.276 -0.034 -7.091 -7.303 -8.195 1.795 -2.792 -2.382 -2.377 D 165 163 3 166 5 0 0 49 86 -4.959 -0.803 -4.221 -2.596 -2.508 IL 166 166 3 166 5 1 1 50 88 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 52 ] 43 72 G C - - MP 167 166 3 171 6 2 2 49 87 -9.196 -9.135 -0.020 -7.912 -8.192 -8.587 -5.149 -3.291 -5.298 -0.079 -5.804 -4.849 -1.067 -5.561 -4.583 3.722 -4.893 -1.008 -1.442 -4.732 -3.128 -4.168 ML 168 166 3 171 6 1 1 47 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 3 171 6 1 1 47 85 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 3 171 6 0 0 44 82 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 49 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 48 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 53 ] 44 71 G C - - MP 173 172 6 177 6 2 2 47 85 -9.196 -9.135 -0.020 -7.912 -8.192 -8.587 -4.227 -2.931 -4.183 0.541 -4.394 -4.485 0.639 -4.469 -4.129 3.400 -4.460 -0.630 -0.235 -4.022 -1.835 -3.104 ML 174 172 6 177 6 1 1 45 83 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 6 1 1 45 83 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 6 177 6 0 0 42 80 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 47 84 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 46 84 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 54 ] 45 70 G C - - MP 179 178 6 183 6 2 2 45 83 -9.196 -9.135 -0.020 -7.912 -8.192 -8.587 -4.139 -2.798 -4.146 1.408 -4.818 -4.626 -0.194 -4.514 -4.053 3.342 -4.435 -0.429 -0.495 -4.071 -2.193 -3.039 ML 180 178 6 183 6 1 1 43 81 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 6 1 1 43 81 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 182 178 6 183 6 0 0 40 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 183 183 5 183 6 1 1 45 82 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 184 184 6 184 5 1 1 44 82 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 55 ] 46 69 G C - - MP 185 184 6 189 6 2 2 43 81 -9.196 -9.135 -0.020 -7.912 -8.192 -8.587 -3.443 -2.454 -3.423 1.117 -3.947 -4.011 0.386 -3.913 -3.608 3.094 -3.978 0.317 0.122 -1.286 -1.506 -2.450 ML 186 184 6 189 6 1 1 42 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 187 184 6 189 6 1 1 41 79 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 188 184 6 189 6 0 0 39 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 189 189 5 189 6 1 1 43 80 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 190 190 6 190 5 1 1 42 80 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 56 ] 47 68 c g - - MP 191 190 6 195 6 2 2 41 79 -9.196 -9.135 -0.215 -7.912 -8.192 -2.976 -3.698 -3.666 -3.613 0.070 -2.594 -4.220 2.795 -3.291 -3.615 0.262 -4.028 -1.667 1.747 -3.861 1.132 -2.497 ML 192 190 6 195 6 1 1 40 77 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 193 190 6 195 6 1 1 39 77 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 194 190 6 195 6 0 0 38 76 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 195 195 5 195 6 1 1 41 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 196 196 6 196 5 1 1 41 78 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 57 ] 48 67 c g - - MP 197 196 6 201 4 2 2 39 77 -2.636 -4.195 -0.398 -5.281 -3.500 -3.430 -3.371 0.236 -2.335 -3.919 2.912 -3.046 -3.398 0.527 -3.773 -1.461 1.288 -3.632 0.949 -2.284 ML 198 196 6 201 4 1 1 37 75 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 199 196 6 201 4 1 1 37 75 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 200 196 6 201 4 0 0 38 76 -6.198 -1.584 -1.225 -2.150 IL 201 201 5 201 4 1 1 41 78 -2.310 -1.069 -1.741 -5.478 0.000 0.000 0.000 0.000 IR 202 202 6 202 3 1 1 40 78 -0.704 -1.436 -5.926 0.000 0.000 0.000 0.000 [ MATL 58 ] 50 - u - - - ML 203 202 6 205 3 1 1 20 38 -8.171 -0.018 -6.825 -0.363 -0.018 -0.906 0.767 D 204 202 6 205 3 0 0 19 38 -6.174 -1.687 -0.566 IL 205 205 3 205 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 51 - u - - - ML 206 205 3 208 3 1 1 19 37 -8.171 -0.018 -6.825 -0.034 0.179 -0.401 0.181 D 207 205 3 208 3 0 0 18 37 -6.174 -1.687 -0.566 IL 208 208 3 208 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 52 - a - - - ML 209 208 3 211 3 1 1 17 36 -8.171 -0.018 -6.825 0.290 -0.230 -0.189 0.067 D 210 208 3 211 3 0 0 17 35 -6.174 -1.687 -0.566 IL 211 211 3 211 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 53 - g - - - ML 212 211 3 214 3 1 1 16 35 -8.171 -0.018 -6.825 -0.153 -1.014 0.943 -0.550 D 213 211 3 214 3 0 0 16 34 -6.174 -1.687 -0.566 IL 214 214 3 214 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 54 - c - - - ML 215 214 3 217 3 1 1 15 33 -8.171 -0.191 -3.055 -0.173 0.366 -0.523 0.174 D 216 214 3 217 3 0 0 15 33 -6.174 -1.687 -0.566 IL 217 217 3 217 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 55 - c - - - ML 218 217 3 220 3 1 1 13 31 -8.001 -0.063 -4.690 -0.589 0.879 -0.954 -0.029 D 219 217 3 220 3 0 0 13 31 -7.305 -2.818 -0.231 IL 220 220 3 220 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 56 - C - - - ML 221 220 3 223 2 1 1 1 1 * 0.000 -0.674 1.030 -0.998 -0.268 D 222 220 3 223 2 0 0 0 0 * 0.000 IL 223 223 3 223 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 224 223 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME hya ACC RF02992 DESC hya RNA LENG 72 MAXL 156 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 21:41:34 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 27 EFFN 3.437622 CKSUM 1386412174 STATS LOCAL MSV -8.1563 0.71884 STATS LOCAL VITERBI -9.1250 0.71884 STATS LOCAL FORWARD -3.2561 0.71884 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.57247 1.28285 1.06084 1.77753 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 0.00000 * 1 0.56940 2.37170 1.76237 1.77681 1 A - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 2 2.18358 2.82099 0.27467 2.68829 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 3 3.14417 0.34103 2.93415 1.64672 3 C - - < 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 4 1.99532 2.91976 0.29092 2.77248 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 5 1.99057 0.98074 1.63027 1.22939 5 c - - < 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 6 2.95730 0.42307 2.73621 1.47756 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 7 1.19141 2.67888 0.60224 2.52593 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 8 3.17141 0.30736 2.96472 1.76555 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 9 1.77516 3.13564 0.32371 2.75494 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 10 2.90579 0.22956 3.49845 2.11890 10 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 11 0.09444 3.70326 3.38468 3.45515 11 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 12 0.26657 2.99173 2.14830 2.70131 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 13 3.16091 4.09374 0.08857 3.66131 13 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 14 2.68133 2.38363 3.19925 0.22499 14 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 15 3.16091 4.09374 0.08857 3.66131 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 16 2.68073 3.43189 0.18188 2.72631 16 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 17 3.16091 4.09374 0.08857 3.66131 17 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 18 3.40282 0.11696 3.96530 2.84493 18 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 19 3.40282 0.11696 3.96530 2.84493 19 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 20 3.16091 4.09374 0.08857 3.66131 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 21 0.09444 3.70326 3.38468 3.45515 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 22 1.41488 1.38753 1.28953 1.46122 22 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 23 2.11672 2.74860 0.29692 2.62476 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 24 2.36605 3.01529 0.29864 2.16030 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 25 2.42617 2.47012 2.67915 0.27651 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 26 3.40282 0.11696 3.96530 2.84493 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 27 3.16091 4.09374 0.08857 3.66131 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 28 0.09444 3.70326 3.38468 3.45515 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 29 3.40282 0.11696 3.96530 2.84493 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 30 2.66590 2.35596 3.18370 0.23038 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 31 3.40282 0.11696 3.96530 2.84493 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 32 3.40282 0.11696 3.96530 2.84493 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 33 2.06109 2.60734 0.51659 1.59750 33 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 34 2.13503 3.12332 0.24289 2.93005 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 35 2.76693 0.73148 2.48619 0.98692 35 c - - > 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 36 1.86968 2.89809 0.32233 2.71446 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 37 1.44493 1.71578 0.85168 1.84697 37 g - - > 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 38 3.00469 0.35927 2.72845 1.67696 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 39 2.24097 3.08140 0.23355 2.88190 39 G - - > 1.38629 1.38629 1.38629 1.38629 0.37504 1.21232 4.18465 0.09940 2.35790 1.09861 0.40547 40 1.60943 0.69488 2.20331 1.65849 41 c - - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 41 0.09444 3.70326 3.38468 3.45515 42 A - - - 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 42 2.89697 3.70814 0.11170 3.65066 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 43 2.37649 2.34807 0.29347 2.71962 44 G - - < 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 44 1.69788 2.99497 0.34279 2.86290 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 45 1.89593 2.54006 0.42345 2.15267 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 46 2.66960 0.74764 2.44512 0.99284 47 c - - < 1.38629 1.38629 1.38629 1.38629 0.43627 4.18465 1.08374 1.46634 0.26236 1.09861 0.40547 47 2.50928 0.64528 2.25620 1.23991 48 C - - < 1.38629 1.38629 1.38629 1.38629 0.24218 1.64721 3.79442 0.21919 1.62540 0.08619 2.49396 48 1.70583 1.37348 2.05703 0.82709 50 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 49 1.44064 1.21822 1.66006 1.28251 51 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 50 1.18535 1.53199 1.50349 1.36295 52 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 51 1.56919 2.16431 0.64452 1.88359 53 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 52 1.55718 1.07538 1.75465 1.29050 54 c - - _ 1.38629 1.38629 1.38629 1.38629 0.17381 4.18465 1.93577 1.46634 0.26236 1.09861 0.40547 53 1.93425 0.68406 2.11720 1.46735 55 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03560 4.04644 4.04644 1.46634 0.26236 1.51681 0.24771 54 2.03051 0.56356 2.16902 1.68598 56 C - - _ 1.38629 1.38629 1.38629 1.38629 0.40701 1.41300 2.39742 1.43861 0.27083 2.29847 0.10582 55 1.81291 2.41793 0.43877 2.27412 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.03748 3.99585 3.99585 1.46634 0.26236 0.15067 1.96703 56 1.48357 2.61440 0.49020 2.43662 68 G - - > 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 57 2.64548 0.49437 2.35005 1.49740 69 C - - > 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 58 3.09498 0.39144 2.81011 1.52125 70 C - - > 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 59 2.96199 0.33215 2.22891 2.09347 71 C - - > 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 60 3.81596 0.13533 3.54542 2.58100 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 61 2.46430 3.61628 0.16462 3.22311 73 G - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 62 3.16091 4.09374 0.08857 3.66131 74 G - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 63 0.46334 2.12584 2.03552 2.11299 75 A - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 64 0.28822 2.95038 2.05884 2.65239 76 A - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 65 0.09444 3.70326 3.38468 3.45515 77 A - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 66 2.46146 3.14108 0.25584 2.33113 78 G - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 67 2.28131 0.62552 2.88174 1.18146 79 C - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 68 1.82906 2.00503 1.53321 0.71552 80 u - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 69 2.07168 3.33638 0.24040 2.95367 81 G - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 70 1.75012 0.77527 2.55446 1.24504 82 c - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 71 0.93784 1.84124 1.24946 1.81248 83 a - - : 1.38629 1.38629 1.38629 1.38629 0.03093 4.18465 4.18465 1.46634 0.26236 1.09861 0.40547 72 1.23693 1.92581 1.08727 1.48354 84 g - - : 1.38629 1.38629 1.38629 1.38629 0.01558 4.16931 * 1.46634 0.26236 0.00000 * //