INFERNAL1/a [1.1.4 | Dec 2020] NAME freshwater-1 ACC RF02979 DESC freshwater-1 RNA STATES 195 NODES 53 CLEN 62 W 82 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 16:46:18 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 8 EFFN 2.683594 CKSUM 2097918661 NULL 0.000 0.000 0.000 0.000 GA 72.00 TC 72.00 NC 36.10 EFP7GF -9.5886 0.71914 ECMLC 0.66005 -6.95207 2.11292 1600000 476107 0.002520 ECMGC 0.42329 -15.94393 -3.21785 1600000 87407 0.004576 ECMLI 0.65333 -5.02090 3.47051 1600000 307971 0.003896 ECMGI 0.43906 -12.29828 -0.42696 1600000 73403 0.005449 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 82 104 -7.228 -7.435 -0.044 -5.849 IL 1 1 2 1 4 1 25 85 108 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 24 84 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 2 24 82 104 -8.226 -0.017 -6.880 -1.982 -1.893 -2.736 1.734 D 4 2 3 5 3 0 20 80 103 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 24 83 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 23 81 103 -8.226 -0.017 -6.880 -2.129 -3.426 1.822 -2.812 D 7 5 3 8 3 0 19 79 102 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 23 82 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 22 80 102 -8.226 -0.017 -6.880 -1.982 -1.893 -2.736 1.734 D 10 8 3 11 3 0 18 78 101 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 22 81 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - g - - - ML 12 11 3 14 3 1 22 79 101 -8.226 -0.017 -6.880 0.182 -1.244 0.719 -0.328 D 13 11 3 14 3 0 18 77 100 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 21 80 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 21 78 100 -8.226 -0.017 -6.880 1.067 -0.787 -0.529 -0.663 D 16 14 3 17 3 0 17 76 99 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 20 79 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - u - - - ML 18 17 3 20 3 1 20 77 99 -8.226 -0.017 -6.880 -0.139 -0.512 -0.616 0.797 D 19 17 3 20 3 0 16 75 98 -6.174 -1.687 -0.566 IL 20 20 3 20 3 1 20 78 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - G - - - ML 21 20 3 23 3 1 19 76 98 -8.226 -0.017 -6.880 -0.444 -2.226 1.451 -1.655 D 22 20 3 23 3 0 16 74 97 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 19 77 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 18 75 97 -8.226 -0.134 -3.556 -2.129 -3.426 1.822 -2.812 D 25 23 3 26 3 0 15 73 96 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 18 76 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 27 26 3 29 3 1 17 74 96 -8.111 -0.019 -6.765 1.776 -2.669 -2.272 -2.242 D 28 26 3 29 3 0 15 73 95 -7.061 -0.673 -1.452 IL 29 29 3 29 3 1 17 75 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - C - - - ML 30 29 3 32 3 1 16 73 95 -8.601 -0.016 -6.918 -1.473 1.417 -2.325 -0.376 D 31 29 3 32 3 0 13 71 94 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 16 73 96 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 67 - A - - MR 33 32 3 35 3 1 15 72 94 -8.601 -0.016 -6.918 1.812 -2.902 -2.482 -2.499 D 34 32 3 35 3 0 12 70 92 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 15 72 95 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 66 - A - - MR 36 35 3 38 3 1 14 71 93 -8.601 -0.016 -6.918 1.380 -0.864 -1.501 -1.018 D 37 35 3 38 3 0 11 69 91 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 14 71 94 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 65 - A - - MR 39 38 3 41 3 1 13 70 92 -8.601 -0.016 -6.918 1.812 -2.902 -2.482 -2.499 D 40 38 3 41 3 0 11 68 90 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 13 70 93 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 64 - a - - MR 42 41 3 44 3 1 12 69 91 -8.601 -0.016 -6.918 0.880 0.087 -1.281 -0.543 D 43 41 3 44 3 0 10 67 89 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 13 69 92 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 63 - U - - MR 45 44 3 47 3 1 11 68 90 -8.601 -0.016 -6.918 -0.913 -1.167 -1.008 1.337 D 46 44 3 47 3 0 10 66 89 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 12 68 91 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 62 - A - - MR 48 47 3 50 2 1 10 67 89 -8.666 -0.004 1.092 -1.649 0.113 -1.096 D 49 47 3 50 2 0 9 66 88 -4.432 -0.068 IR 50 50 3 50 2 1 11 68 90 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 17 ] - - - - - - B 51 50 3 52 132 0 9 66 88 [ BEGL 18 ] - - - - - - S 52 51 1 53 4 0 0 46 68 -0.040 -6.982 -6.389 -7.029 [ MATP 19 ] 11 41 C G - - MP 53 52 1 57 6 2 2 46 68 -9.221 -9.160 -0.019 -7.937 -8.216 -8.611 -5.129 -5.084 -4.718 -1.273 -3.321 -5.052 3.696 -4.189 -4.792 -1.102 -4.984 -3.044 0.127 -5.158 -1.047 -3.614 ML 54 52 1 57 6 1 1 44 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 1 57 6 1 1 44 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 1 57 6 0 0 41 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 45 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 45 67 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 12 40 C G - - MP 59 58 6 63 6 2 2 44 66 -9.221 -9.160 -0.019 -7.937 -8.216 -8.611 -5.129 -5.084 -4.718 -1.273 -3.321 -5.052 3.696 -4.189 -4.792 -1.102 -4.984 -3.044 0.127 -5.158 -1.047 -3.614 ML 60 58 6 63 6 1 1 42 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 42 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 40 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 43 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 43 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 13 39 U A - - MP 65 64 6 69 6 2 2 42 64 -9.221 -9.160 -0.019 -7.937 -8.216 -8.611 -4.844 -4.679 -4.606 -0.934 -3.419 -5.108 0.918 -4.156 -4.606 -0.761 -4.946 -2.558 3.568 -4.965 -1.080 -3.353 ML 66 64 6 69 6 1 1 41 63 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 40 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 38 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 41 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 41 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 14 38 G C - - MP 71 70 6 75 4 2 2 40 62 -7.228 -7.435 -0.044 -5.849 -5.254 -3.342 -5.420 -0.153 -5.950 -4.887 -1.187 -5.686 -4.646 3.740 -4.950 -1.066 -1.560 -4.799 -3.255 -4.289 ML 72 70 6 75 4 1 1 39 62 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 4 1 1 39 61 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 74 70 6 75 4 0 0 38 60 -4.568 -4.250 -2.265 -0.520 IL 75 75 5 75 4 1 1 41 63 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 76 76 6 76 3 1 1 40 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 15 - C - - - ML 77 76 6 79 3 1 1 37 60 -8.226 -0.017 -6.880 -1.044 1.271 -1.042 -0.700 D 78 76 6 79 3 0 0 36 58 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 39 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - U - - - ML 80 79 3 82 3 1 1 36 59 -8.226 -0.017 -6.880 -1.982 -1.893 -2.736 1.734 D 81 79 3 82 3 0 0 35 57 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 38 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - C - - - ML 83 82 3 85 3 1 1 35 58 -8.601 -0.016 -6.918 -2.384 1.760 -3.214 -1.671 D 84 82 3 85 3 0 0 34 56 -5.620 -0.734 -1.403 IL 85 85 3 85 3 1 1 36 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 37 - A - - MR 86 85 3 88 5 1 1 34 57 -7.324 -0.033 -7.140 -7.352 -8.244 1.812 -2.902 -2.482 -2.499 D 87 85 3 88 5 0 0 33 55 -5.352 -0.707 -2.978 -4.409 -2.404 IR 88 88 3 88 5 1 1 35 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 18 36 U A - - MP 89 88 3 93 6 2 2 33 56 -9.221 -9.160 -0.157 -7.937 -8.216 -3.435 -4.844 -4.679 -4.606 -0.934 -3.419 -5.108 0.918 -4.156 -4.606 -0.761 -4.946 -2.558 3.568 -4.965 -1.080 -3.353 ML 90 88 3 93 6 1 1 32 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 3 93 6 1 1 32 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 3 93 6 0 0 30 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 33 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 33 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 19 35 G C - - MP 95 94 6 99 6 2 2 31 54 -3.611 -9.024 -0.144 -7.801 -8.081 -8.476 -4.637 -3.044 -4.727 0.269 -5.085 -4.653 -0.476 -4.962 -4.259 3.612 -4.603 -0.739 -0.864 -4.399 -2.507 -3.605 ML 96 94 6 99 6 1 1 30 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 29 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 29 51 -10.453 -9.151 -0.612 -5.630 -5.648 -1.723 IL 99 99 5 99 6 1 1 31 53 -3.406 -0.958 -1.586 -5.324 -6.100 -5.760 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 30 52 -2.963 -0.622 -6.475 -2.378 -5.748 0.000 0.000 0.000 0.000 [ MATP 29 ] 21 33 c g - - MP 101 100 6 105 6 2 2 29 51 -9.170 -9.109 -0.020 -7.886 -8.165 -8.560 -3.093 -2.633 -3.147 1.933 -2.897 -3.958 1.939 -3.254 -3.201 1.907 -3.685 -0.476 0.997 -3.271 -0.589 -2.107 ML 102 100 6 105 6 1 1 28 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 28 50 -7.508 -6.237 -0.920 -6.215 -1.349 -4.428 -0.195 -0.502 -0.816 0.889 D 104 100 6 105 6 0 0 25 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 29 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 28 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 22 32 u a - - MP 107 106 6 111 6 2 2 27 49 -9.221 -9.160 -0.076 -7.937 -8.216 -4.621 -3.090 -3.057 -3.149 1.022 -2.502 -3.908 1.736 -3.068 -3.157 0.729 -3.654 -1.138 2.202 -3.330 1.428 -2.120 ML 108 106 6 111 6 1 1 26 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 6 1 1 25 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 110 106 6 111 6 0 0 23 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 111 111 5 111 6 1 1 27 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 112 112 6 112 5 1 1 26 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 23 31 G C - - MP 113 112 6 117 4 2 2 25 47 -2.073 -7.301 -0.440 -5.715 -5.011 -3.223 -5.140 0.018 -5.611 -4.797 -0.908 -5.398 -4.499 3.696 -4.818 -0.934 -1.286 -4.643 -2.961 -4.012 ML 114 112 6 117 4 1 1 23 45 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 115 112 6 117 4 1 1 23 45 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 116 112 6 117 4 0 0 21 43 -5.293 -4.974 -0.942 -1.244 IL 117 117 5 117 4 1 1 25 47 -2.766 -0.693 -2.198 -5.935 0.000 0.000 0.000 0.000 IR 118 118 6 118 3 1 1 24 46 -1.194 -0.900 -5.211 0.000 0.000 0.000 0.000 [ MATL 32 ] 25 - U - - - ML 119 118 6 121 3 1 1 16 35 -8.226 -0.017 -6.880 -0.883 -1.153 -0.941 1.314 D 120 118 6 121 3 0 0 16 34 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 26 - G - - - ML 122 121 3 124 3 1 1 15 33 -8.226 -0.017 -6.880 -2.129 -3.426 1.822 -2.812 D 123 121 3 124 3 0 0 15 33 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 27 - C - - - ML 125 124 3 127 3 1 1 13 31 -8.226 -0.017 -6.880 -2.384 1.760 -3.214 -1.671 D 126 124 3 127 3 0 0 13 32 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 28 - A - - - ML 128 127 3 130 2 1 1 1 1 * 0.000 1.407 -0.937 -1.528 -1.064 D 129 127 3 130 2 0 0 0 0 * 0.000 IL 130 130 3 130 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 36 ] - - - - - - E 131 130 3 -1 0 0 0 0 0 [ BEGR 37 ] - - - - - - S 132 51 1 133 5 0 0 34 53 -7.324 -0.033 -7.140 -7.352 -8.244 IL 133 133 2 133 5 1 1 35 54 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 42 61 u a - - MP 134 133 2 138 6 2 2 34 53 -9.221 -9.160 -0.019 -7.937 -8.216 -8.611 -2.484 -2.522 -2.622 1.188 -2.277 -3.449 1.700 -2.741 -2.652 1.008 -3.195 -0.778 2.172 -2.769 0.342 -0.461 ML 135 133 2 138 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 2 138 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 2 138 6 0 0 30 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 43 60 G C - - MP 140 139 6 144 6 2 2 32 51 -9.221 -9.160 -0.019 -7.937 -8.216 -8.611 -5.254 -3.342 -5.420 -0.153 -5.950 -4.887 -1.187 -5.686 -4.646 3.740 -4.950 -1.066 -1.560 -4.799 -3.255 -4.289 ML 141 139 6 144 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 44 59 g c - - MP 146 145 6 150 6 2 2 30 49 -9.221 -9.160 -0.019 -7.937 -8.216 -8.611 -3.707 -2.617 -3.731 2.437 -4.324 -4.663 0.132 -4.027 -3.725 2.724 -4.190 -0.193 -0.159 -3.904 -1.823 -2.610 ML 147 145 6 150 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 26 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 45 58 u a - - MP 152 151 6 156 6 2 2 28 47 -9.221 -9.160 -0.019 -7.937 -8.216 -8.611 -3.035 -2.666 -3.112 1.764 -2.840 -3.951 1.407 -3.211 -3.149 1.785 -3.655 -0.545 1.964 -3.251 -0.563 -2.083 ML 153 151 6 156 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 46 57 g c - - MP 158 157 6 162 6 2 2 26 45 -9.221 -9.160 -0.019 -7.937 -8.216 -8.611 -3.691 -2.930 -3.644 0.691 -3.322 -4.274 1.987 -3.706 -3.717 2.764 -4.117 -0.675 0.649 -3.700 -0.899 -2.552 ML 159 157 6 162 6 1 1 25 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 25 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 47 56 g c - - MP 164 163 6 168 4 2 2 24 43 -7.228 -7.435 -0.044 -5.849 -3.017 -2.331 -3.052 1.773 -3.372 -3.773 0.691 -3.475 -3.226 2.708 -3.660 -0.191 0.438 -0.676 -1.121 -2.123 ML 165 163 6 168 4 1 1 25 44 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 24 43 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 23 42 -4.568 -4.250 -2.265 -0.520 IL 168 168 5 168 4 1 1 26 45 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - G - - - ML 170 169 6 172 3 1 1 21 40 -8.226 -0.017 -6.880 -2.129 -3.426 1.822 -2.812 D 171 169 6 172 3 0 0 20 39 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - g - - - ML 173 172 3 175 3 1 1 20 38 -8.226 -0.017 -6.880 -0.572 -1.236 0.779 0.247 D 174 172 3 175 3 0 0 19 38 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - A - - - ML 176 175 3 178 3 1 1 19 37 -8.226 -0.017 -6.880 1.812 -2.902 -2.482 -2.499 D 177 175 3 178 3 0 0 18 37 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - A - - - ML 179 178 3 181 3 1 1 17 36 -8.226 -0.017 -6.880 1.812 -2.902 -2.482 -2.499 D 180 178 3 181 3 0 0 17 36 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - c - - - ML 182 181 3 184 3 1 1 16 35 -8.226 -0.017 -6.880 0.386 0.657 -1.384 -0.447 D 183 181 3 184 3 0 0 16 34 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - c - - - ML 185 184 3 187 3 1 1 15 33 -8.226 -0.017 -6.880 0.438 0.607 -1.364 -0.446 D 186 184 3 187 3 0 0 15 33 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 54 - a - - - ML 188 187 3 190 3 1 1 13 31 -8.226 -0.017 -6.880 0.856 -1.047 -1.198 0.344 D 189 187 3 190 3 0 0 13 32 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 55 - A - - - ML 191 190 3 193 2 1 1 1 1 * 0.000 1.812 -2.902 -2.482 -2.499 D 192 190 3 193 2 0 0 0 0 * 0.000 IL 193 193 3 193 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 194 193 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME freshwater-1 ACC RF02979 DESC freshwater-1 RNA LENG 62 MAXL 140 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 16:46:18 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 8 EFFN 4.074219 CKSUM 2097918661 STATS LOCAL MSV -7.9131 0.71914 STATS LOCAL VITERBI -8.7399 0.71914 STATS LOCAL FORWARD -3.7149 0.71914 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.27728 1.43556 1.31462 1.53876 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 0.00000 * 1 3.26519 3.12345 3.80166 0.11040 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 2 3.36507 4.31803 0.07110 3.87547 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 3 3.26519 3.12345 3.80166 0.11040 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 4 1.28964 2.42005 0.79256 1.69813 4 g - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 5 0.57041 1.98015 1.79379 2.03770 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 6 1.52349 1.78546 1.82272 0.79243 6 u - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 7 1.80902 3.27242 0.29655 2.90243 7 G - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 8 3.36507 4.31803 0.07110 3.87547 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.12501 4.24749 2.27100 1.46634 0.26236 1.09861 0.40547 9 0.09062 3.74249 3.42067 3.49826 9 A - - : 1.38629 1.38629 1.38629 1.38629 0.03189 4.15438 4.15438 1.46634 0.26236 0.24460 1.52794 10 2.79561 0.30254 3.41257 1.78959 10 C - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 11 3.95072 0.11503 3.79330 2.70457 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 12 3.93766 0.11568 3.78605 2.70209 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 13 3.83785 2.58877 3.67239 0.13019 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 14 3.03744 3.90411 0.09372 3.84693 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 15 2.50559 0.35816 2.22882 2.19143 15 C - - - 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 16 3.26519 3.12345 3.80166 0.11040 16 U - - - 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 17 3.65234 0.09208 4.19534 3.05823 17 C - - - 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 18 3.84508 2.58957 3.67632 0.12983 18 U - - < 1.38629 1.38629 1.38629 1.38629 0.29807 4.24749 1.41286 1.46634 0.26236 1.09861 0.40547 19 2.69941 3.41679 0.14494 3.35632 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.17800 1.93446 3.98723 0.23953 1.54644 0.11108 2.25256 20 1.23593 1.32843 1.28410 1.78593 21 a - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 21 1.93374 1.60899 2.15865 0.61651 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.13432 4.24749 2.19471 1.46634 0.26236 1.09861 0.40547 22 2.88732 3.69487 0.11340 3.62562 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.33612 1.31072 4.14536 0.11360 2.23131 0.22853 1.58816 23 2.28288 2.43805 2.12623 0.36905 25 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 24 3.36507 4.31803 0.07110 3.87547 26 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 25 3.65234 0.09208 4.19534 3.05823 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 26 0.32302 2.09896 2.73173 2.42645 28 A - - _ 1.38629 1.38629 1.38629 1.38629 0.43825 1.41286 2.19471 0.73439 0.65354 1.09861 0.40547 27 3.76174 0.13722 3.53047 2.58119 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03219 4.14536 4.14536 1.46634 0.26236 0.22853 1.58816 28 1.07551 2.32919 0.93056 1.78875 32 g - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 29 2.02104 1.41492 1.23243 1.09975 33 u - - > 1.38629 1.38629 1.38629 1.38629 0.58586 1.60980 1.41286 0.13738 2.05289 1.09861 0.40547 30 3.56402 0.17180 3.25956 2.39550 35 C - - > 1.38629 1.38629 1.38629 1.38629 0.03781 3.98723 3.98723 1.46634 0.26236 0.11108 2.25256 31 0.14682 3.88460 2.42583 3.59034 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 32 0.07526 3.92016 3.58455 3.69244 37 A - - - 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 33 3.99741 0.11378 3.75232 2.72235 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 34 0.14873 3.85950 2.42132 3.56418 39 A - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 35 2.97530 3.93240 0.10057 3.68701 40 G - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 36 2.97047 3.92445 0.10126 3.67827 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 37 1.75158 1.54912 1.85530 0.78163 42 u - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 38 3.04651 3.91760 0.09252 3.86522 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 39 0.89686 2.90226 0.74850 2.74609 44 g - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 40 1.35876 1.82411 1.36474 1.12021 45 u - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 41 2.29748 1.29481 0.68043 2.12744 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 42 1.35552 2.39109 0.69396 1.89004 47 g - - < 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 43 3.36507 4.31803 0.07110 3.87547 48 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 44 1.98312 2.45970 0.73216 1.21729 49 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 45 0.07526 3.92016 3.58455 3.69244 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 46 0.07526 3.92016 3.58455 3.69244 51 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 47 1.09975 0.82243 2.58564 1.88167 52 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 48 1.05600 0.86080 2.56628 1.88050 53 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 49 0.72638 2.27817 2.38494 1.13390 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 50 0.07526 3.92016 3.58455 3.69244 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 51 2.48845 0.68374 2.19831 1.19983 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 52 2.37832 0.73418 1.21550 2.03385 57 c - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 53 1.23094 1.49322 1.65192 1.23220 58 a - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 54 2.98543 0.83647 2.70858 0.79937 59 u - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 55 4.04332 0.11166 3.77515 2.73067 60 C - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 56 1.06639 2.02561 1.25251 1.43527 61 a - - > 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 57 0.55412 2.83975 1.26099 2.48163 62 A - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 58 2.31086 2.45251 2.18438 0.35354 63 U - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 59 0.69975 1.26724 2.49601 1.97134 64 a - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 60 0.07526 3.92016 3.58455 3.69244 65 A - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 61 0.34088 2.03739 2.70779 2.38809 66 A - - : 1.38629 1.38629 1.38629 1.38629 0.02902 4.24749 4.24749 1.46634 0.26236 1.09861 0.40547 62 0.07526 3.92016 3.58455 3.69244 67 A - - : 1.38629 1.38629 1.38629 1.38629 0.01461 4.23309 * 1.46634 0.26236 0.00000 * //