INFERNAL1/a [1.1.4 | Dec 2020] NAME emrB-Lactobacillus ACC RF02971 DESC emrB-Lactobacillus RNA STATES 204 NODES 53 CLEN 65 W 90 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 18:20:27 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 39 EFFN 2.613647 CKSUM 2233767479 NULL 0.000 0.000 0.000 0.000 GA 60.80 TC 60.80 NC 37.20 EFP7GF -10.3055 0.71909 ECMLC 0.61975 -5.20313 4.02656 1600000 365927 0.003279 ECMGC 0.38621 -13.07834 1.20472 1600000 99475 0.004021 ECMLI 0.51567 -5.14326 5.54468 1600000 297020 0.004040 ECMGI 0.42496 -7.27096 4.95949 1600000 72321 0.005531 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 90 115 -7.204 -7.411 -0.044 -5.825 IL 1 1 2 1 4 2 23 93 118 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 23 92 117 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 2 23 90 115 -8.580 -0.016 -6.897 -1.421 -1.059 -2.163 1.548 D 4 2 3 5 3 0 17 89 114 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 22 90 116 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 82 - G - - MR 6 5 3 8 3 2 22 89 114 -8.580 -0.016 -6.897 -2.083 -3.374 1.816 -2.761 D 7 5 3 8 3 0 16 87 112 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 21 90 115 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 81 - A - - MR 9 8 3 11 5 1 21 88 113 -7.304 -0.034 -7.120 -7.332 -8.224 1.805 -2.857 -2.441 -2.449 D 10 8 3 11 5 0 15 86 112 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 19 88 113 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 2 80 A U - - MP 12 11 3 16 6 2 21 87 112 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.241 -3.165 -4.218 3.559 -4.793 -5.908 -0.462 -4.229 -4.101 0.592 -4.670 -0.576 -0.877 -5.013 -2.401 -3.032 ML 13 11 3 16 6 1 16 85 110 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 16 85 110 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 12 83 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 18 86 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 18 86 111 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 79 C G - - MP 18 17 6 22 6 2 19 85 110 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.959 -4.970 -4.695 -1.209 -1.738 -5.124 3.681 -4.307 -4.772 -1.043 -5.014 -3.001 0.058 -5.060 -1.220 -3.629 ML 19 17 6 22 6 1 16 83 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 15 83 108 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 11 81 106 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 17 84 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 17 84 109 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 78 u a - - MP 24 23 6 28 6 2 17 83 108 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.766 -3.770 -3.651 -0.118 -2.623 -4.216 1.670 -3.334 -3.675 0.061 -4.064 -1.850 2.444 -3.920 2.077 -2.579 ML 25 23 6 28 6 1 15 82 107 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 14 81 107 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 11 80 105 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 16 83 108 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 16 82 107 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 5 77 C G - - MP 30 29 6 34 4 2 15 81 106 -7.204 -7.411 -0.044 -5.825 -4.092 -4.094 -3.877 -0.345 -2.672 -4.355 3.022 -3.438 -3.902 -0.166 -4.239 -2.128 0.916 -4.189 1.713 -2.762 ML 31 29 6 34 4 1 14 81 106 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 4 1 12 80 105 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 33 29 6 34 4 0 11 79 104 -4.568 -4.250 -2.265 -0.520 IL 34 34 5 34 4 1 15 82 107 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 35 35 6 35 3 1 14 81 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - A - - - ML 36 35 6 38 3 1 13 79 104 -8.580 -0.016 -6.897 1.805 -2.857 -2.441 -2.449 D 37 35 6 38 3 0 10 77 103 -5.620 -0.734 -1.403 IL 38 38 3 38 3 1 13 79 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 76 - A - - MR 39 38 3 41 3 1 12 78 103 -8.580 -0.016 -6.897 1.805 -2.857 -2.441 -2.449 D 40 38 3 41 3 0 9 76 101 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 12 78 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 75 - A - - MR 42 41 3 44 3 1 12 77 102 -8.580 -0.016 -6.897 1.805 -2.857 -2.441 -2.449 D 43 41 3 44 3 0 8 75 100 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 11 77 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 74 - A - - MR 45 44 3 47 3 1 11 76 101 -8.580 -0.016 -6.897 1.805 -2.857 -2.441 -2.449 D 46 44 3 47 3 0 8 74 99 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 11 76 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 73 - G - - MR 48 47 3 50 3 1 10 75 100 -8.580 -0.016 -6.897 -1.609 -3.043 1.752 -2.451 D 49 47 3 50 3 0 7 73 98 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 10 75 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 72 - A - - MR 51 50 3 53 3 1 9 74 99 -8.580 -0.016 -6.897 1.805 -2.857 -2.441 -2.449 D 52 50 3 53 3 0 7 72 98 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 9 74 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 71 - A - - MR 54 53 3 56 2 1 8 73 98 -8.640 -0.004 1.805 -2.857 -2.441 -2.449 D 55 53 3 56 2 0 7 72 97 -4.432 -0.068 IR 56 56 3 56 2 1 8 74 99 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 57 56 3 58 117 0 7 72 97 [ BEGL 16 ] - - - - - - S 58 57 1 59 4 0 0 35 54 -0.041 -6.969 -6.376 -7.016 [ MATP 17 ] 7 28 G C - - MP 59 58 1 63 6 2 2 35 54 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -5.009 -3.216 -5.136 0.045 -5.865 -4.838 -1.079 -5.480 -4.535 3.692 -4.855 -0.614 -1.386 -4.643 -3.134 -4.013 ML 60 58 1 63 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 1 63 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 1 63 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 35 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 35 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 8 27 c g - - MP 65 64 6 69 6 2 2 33 52 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.704 -3.664 -3.626 0.089 -2.614 -4.246 2.774 -3.306 -3.624 0.281 -4.043 -1.648 1.938 -3.870 0.840 -2.503 ML 66 64 6 69 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 33 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 33 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 9 26 A U - - MP 71 70 6 75 6 2 2 31 50 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.241 -3.165 -4.218 3.559 -4.793 -5.908 -0.462 -4.229 -4.101 0.592 -4.670 -0.576 -0.877 -5.013 -2.401 -3.032 ML 72 70 6 75 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 31 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 31 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 10 25 U A - - MP 77 76 6 81 6 2 2 29 48 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.152 -4.090 -3.946 -0.332 -2.769 -4.446 1.837 -3.518 -3.965 -0.115 -4.310 -2.061 3.165 -4.258 -0.444 -2.811 ML 78 76 6 81 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 29 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 29 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 11 24 A U - - MP 83 82 6 87 6 2 2 27 46 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.241 -3.165 -4.218 3.559 -4.793 -5.908 -0.462 -4.229 -4.101 0.592 -4.670 -0.576 -0.877 -5.013 -2.401 -3.032 ML 84 82 6 87 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 6 87 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 27 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 27 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 12 23 u g - - MP 89 88 6 93 6 2 2 25 44 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.212 -2.970 -3.259 1.464 -2.739 -4.062 1.475 -3.218 -3.261 1.069 -3.752 -0.888 0.974 -3.478 2.238 -2.223 ML 90 88 6 93 6 1 1 24 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 24 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 25 43 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 13 22 u a - - MP 95 94 6 99 4 2 2 23 42 -2.515 -7.411 -0.844 -1.931 -3.366 -3.249 -3.379 0.454 -2.599 -4.106 1.923 -3.202 -3.378 1.152 -3.852 -1.206 2.603 -3.565 0.033 -2.277 ML 96 94 6 99 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 98 94 6 99 4 0 0 20 38 -4.568 -4.250 -2.265 -0.520 IL 99 99 5 99 4 1 1 23 41 -1.503 -1.176 -2.393 -6.131 0.000 0.000 0.000 0.000 IR 100 100 6 100 3 1 1 19 38 -1.961 -0.507 -4.661 0.000 0.000 0.000 0.000 [ MATL 24 ] 16 - U - - - ML 101 100 6 103 3 1 1 17 36 -7.827 -0.023 -6.481 -0.411 -0.526 -1.276 1.098 D 102 100 6 103 3 0 0 16 35 -7.985 -0.316 -2.377 IL 103 103 3 103 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 17 - U - - - ML 104 103 3 106 3 1 1 16 35 -8.204 -0.017 -6.858 -1.569 -1.318 -2.312 1.614 D 105 103 3 106 3 0 0 16 34 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 18 - g - - - ML 107 106 3 109 3 1 1 15 33 -8.204 -0.017 -6.858 -0.149 -1.306 0.915 -0.309 D 108 106 3 109 3 0 0 15 33 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 19 - A - - - ML 110 109 3 112 3 1 1 13 31 -8.204 -0.017 -6.858 1.805 -2.857 -2.441 -2.449 D 111 109 3 112 3 0 0 13 32 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 20 - U - - - ML 113 112 3 115 2 1 1 1 1 * 0.000 -1.107 -0.377 -1.862 1.317 D 114 112 3 115 2 0 0 0 0 * 0.000 IL 115 115 3 115 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 29 ] - - - - - - E 116 115 3 -1 0 0 0 0 0 [ BEGR 30 ] - - - - - - S 117 57 1 118 3 0 0 51 76 -8.204 -0.017 -6.858 IL 118 118 2 118 3 1 1 54 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 29 - G - - - ML 119 118 2 121 3 1 1 51 76 -8.204 -0.146 -3.424 0.260 -1.790 1.057 -1.210 D 120 118 2 121 3 0 0 50 75 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 53 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 30 - g - - - ML 122 121 3 124 3 1 1 51 76 -8.076 -0.055 -4.893 -0.364 -0.835 0.493 0.327 D 123 121 3 124 3 0 0 49 74 -7.117 -0.641 -1.509 IL 124 124 3 124 3 1 1 52 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 31 - a - - - ML 125 124 3 127 3 1 1 50 75 -8.171 -0.018 -6.825 0.792 -0.777 -1.108 0.288 D 126 124 3 127 3 0 0 48 73 -6.487 -1.168 -0.879 IL 127 127 3 127 3 1 1 51 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 32 - U - - - ML 128 127 3 130 3 1 1 49 74 -3.723 -0.127 -6.858 -1.341 -0.905 -2.084 1.504 D 129 127 3 130 3 0 0 46 71 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 49 74 -1.703 -0.631 -4.403 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - - - ML 131 130 3 133 3 1 1 47 72 -8.204 -0.017 -6.858 -0.622 -1.037 -0.332 1.049 D 132 130 3 133 3 0 0 45 70 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 48 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - A - - - ML 134 133 3 136 3 1 1 46 71 -8.204 -0.017 -6.858 1.805 -2.857 -2.441 -2.449 D 135 133 3 136 3 0 0 44 69 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 47 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - A - - - ML 137 136 3 139 3 1 1 45 70 -8.204 -0.017 -6.858 1.805 -2.857 -2.441 -2.449 D 138 136 3 139 3 0 0 43 69 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 46 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - U - - - ML 140 139 3 142 3 1 1 44 69 -8.204 -0.017 -6.858 -1.939 -1.858 -2.692 1.726 D 141 139 3 142 3 0 0 43 68 -6.174 -1.687 -0.566 IL 142 142 3 142 3 1 1 45 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 38 - A - - - ML 143 142 3 145 5 1 1 43 68 -7.304 -0.034 -7.120 -7.332 -8.224 1.580 -2.081 -1.151 -1.629 D 144 142 3 145 5 0 0 42 67 -4.959 -0.803 -4.221 -2.596 -2.508 IL 145 145 3 145 5 1 1 43 68 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 39 70 U A - - MP 146 145 3 150 6 2 2 42 67 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -4.784 -4.619 -4.554 -0.877 -3.377 -5.061 0.959 -4.111 -4.554 -0.697 -4.897 -2.499 3.551 -4.908 -1.040 -3.309 ML 147 145 3 150 6 1 1 41 66 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 3 150 6 1 1 40 65 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 3 150 6 0 0 38 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 42 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 41 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 40 69 A U - - MP 152 151 6 156 6 2 2 40 65 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.766 -2.727 -3.843 3.234 -4.534 -5.296 -0.203 -3.996 -3.709 1.589 -4.272 0.003 -0.464 -4.361 -2.125 -2.657 ML 153 151 6 156 6 1 1 39 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 38 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 36 61 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 40 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 39 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 41 68 a u - - MP 158 157 6 162 6 2 2 38 63 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.490 -2.506 -3.548 2.498 -4.150 -4.616 0.158 -3.836 -3.536 2.234 -4.034 1.249 -0.093 -3.795 -1.743 -2.441 ML 159 157 6 162 6 1 1 37 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 36 61 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 34 59 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 162 162 5 162 6 1 1 38 63 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 37 62 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 42 67 u a - - MP 164 163 6 168 6 2 2 36 61 -9.211 -9.150 -0.020 -7.926 -8.206 -8.601 -3.819 -3.773 -3.706 -0.004 -2.640 -4.291 2.453 -3.351 -3.709 0.207 -4.108 -1.747 2.631 -3.965 -0.026 -2.576 ML 165 163 6 168 6 1 1 35 60 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 6 1 1 34 59 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 167 163 6 168 6 0 0 32 57 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 168 168 5 168 6 1 1 36 61 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 169 169 6 169 5 1 1 35 60 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 43 66 U A - - MP 170 169 6 174 6 2 2 34 59 -9.211 -5.786 -0.060 -7.926 -8.206 -6.220 -3.898 -3.874 -3.778 -0.162 -2.724 -4.347 1.702 -3.438 -3.793 0.042 -4.184 -1.900 3.032 -4.043 0.614 -2.665 ML 171 169 6 174 6 1 1 33 58 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 172 169 6 174 6 1 1 32 57 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 173 169 6 174 6 0 0 30 55 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 174 174 5 174 6 1 1 34 59 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 175 175 6 175 5 1 1 33 58 -2.552 -0.441 -6.063 -4.231 -5.337 0.000 0.000 0.000 0.000 [ MATP 45 ] 44 64 a u - - MP 176 175 6 180 6 2 2 32 57 -9.195 -9.134 -0.104 -7.911 -8.191 -4.103 -3.441 -2.666 -3.491 2.881 -3.620 -4.525 0.658 -3.641 -3.478 1.712 -3.987 -0.295 0.672 -3.766 -1.286 -2.397 ML 177 175 6 180 6 1 1 30 55 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 178 175 6 180 6 1 1 30 55 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 179 175 6 180 6 0 0 27 52 -9.308 -8.007 -3.804 -4.486 -4.503 -0.262 IL 180 180 5 180 6 1 1 32 57 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 181 181 6 181 5 1 1 32 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 45 63 g c - - MP 182 181 6 186 4 2 2 30 55 -1.168 -7.168 -0.924 -5.582 -3.081 -2.519 -3.112 1.126 -2.964 -3.867 1.530 -3.291 -3.220 2.430 -3.678 -0.158 1.458 -3.168 -0.611 -2.079 ML 183 181 6 186 4 1 1 27 52 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 184 181 6 186 4 1 1 27 52 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 185 181 6 186 4 0 0 25 50 -5.652 -5.333 -0.675 -1.603 IL 186 186 5 186 4 1 1 29 54 -1.150 -4.622 -0.996 -7.108 0.000 0.000 0.000 0.000 IR 187 187 6 187 3 1 1 27 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 52 - a - - - ML 188 187 6 190 3 1 1 25 50 -8.204 -0.017 -6.858 0.409 -0.645 -0.200 0.218 D 189 187 6 190 3 0 0 23 48 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 26 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 53 - u - - - ML 191 190 3 193 3 1 1 24 49 -8.204 -0.017 -6.858 0.074 -0.310 -0.627 0.578 D 192 190 3 193 3 0 0 22 47 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 25 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 54 - U - - - ML 194 193 3 196 3 1 1 23 48 -8.204 -0.202 -2.977 -0.430 -1.000 -1.571 1.276 D 195 193 3 196 3 0 0 21 46 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 25 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 55 - A - - - ML 197 196 3 199 3 1 1 22 47 -1.610 -0.726 -3.881 1.025 -1.076 -0.668 -0.216 D 198 196 3 199 3 0 0 16 41 -7.371 -0.717 -1.375 IL 199 199 3 199 3 1 1 23 47 -1.078 -1.577 -2.388 0.000 0.000 0.000 0.000 [ MATL 51 ] 62 - g - - - ML 200 199 3 202 2 1 1 1 1 * 0.000 0.232 -1.000 0.523 -0.171 D 201 199 3 202 2 0 0 0 0 * 0.000 IL 202 202 3 202 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 52 ] - - - - - - E 203 202 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME emrB-Lactobacillus ACC RF02971 DESC emrB-Lactobacillus RNA LENG 65 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 18:20:27 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 39 EFFN 4.108521 CKSUM 2233767479 STATS LOCAL MSV -7.7880 0.71909 STATS LOCAL VITERBI -8.9446 0.71909 STATS LOCAL FORWARD -3.0313 0.71909 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.05529 1.95986 1.55022 1.20789 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 0.00000 * 1 2.76607 2.31236 3.28480 0.22237 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 2 0.14748 3.67121 2.48653 3.55882 2 A - - ( 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 3 4.01707 0.09949 3.86269 2.88811 3 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 4 3.08532 1.78996 2.89402 0.31202 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 5 3.21891 0.55602 3.02932 1.08422 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 6 0.07442 3.93094 3.59455 3.70415 6 A - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 7 2.91960 3.84717 0.10408 3.74868 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 8 2.74825 0.74465 2.51862 0.96630 8 c - - < 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 9 0.14791 3.66666 2.48539 3.55298 9 A - - < 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 10 3.20886 1.57376 3.00548 0.35266 10 U - - < 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 11 0.14828 3.66289 2.48444 3.54815 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 12 1.57172 1.95698 1.95994 0.67303 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 13 2.44304 1.43768 1.83901 0.66038 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.65404 1.61825 1.26652 0.55513 0.85331 1.09861 0.40547 14 1.81330 1.83703 2.46963 0.52260 16 U - - _ 1.38629 1.38629 1.38629 1.38629 0.04065 3.91611 3.91611 1.46634 0.26236 0.09857 2.36592 15 2.89283 2.55494 3.41208 0.18163 17 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 16 1.58358 2.49971 0.63834 1.69019 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 17 0.07442 3.93094 3.59455 3.70415 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 18 2.49167 1.69285 3.02476 0.37883 20 U - - _ 1.38629 1.38629 1.38629 1.38629 0.23933 1.61825 4.22702 0.14126 2.02698 1.09861 0.40547 19 0.77678 1.95909 1.23904 2.21214 22 a - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 20 2.26318 2.14241 0.60770 1.45239 23 G - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 21 3.75626 2.85478 3.46576 0.11900 24 U - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 22 0.39812 3.16905 1.44995 2.96055 25 A - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 23 3.75480 2.85452 3.46508 0.11908 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 24 1.33335 2.68641 0.53305 2.50750 27 G - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 25 3.87435 0.14040 3.66281 2.47032 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 26 1.21349 2.95474 0.55371 2.57789 29 G - - , 1.38629 1.38629 1.38629 1.38629 0.13637 4.22702 2.18139 1.46634 0.26236 1.09861 0.40547 27 1.78036 2.07473 0.93735 1.15782 30 g - - , 1.38629 1.38629 1.38629 1.38629 0.06293 4.12355 3.10549 1.46634 0.26236 0.23000 1.58248 28 0.76993 2.02402 2.30367 1.18764 31 a - - , 1.38629 1.38629 1.38629 1.38629 0.03042 4.20087 4.20087 1.46634 0.26236 0.54383 0.86875 29 2.69885 2.17046 3.21898 0.25026 32 U - - , 1.38629 1.38629 1.38629 1.38629 0.12024 2.31570 4.22702 0.27336 1.43055 1.09861 0.40547 30 2.04945 2.32645 1.61412 0.55428 34 U - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 31 0.07442 3.93094 3.59455 3.70415 35 A - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 32 0.07442 3.93094 3.59455 3.70415 36 A - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 33 3.27573 3.13242 3.81242 0.10925 37 U - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 34 0.21357 3.20404 2.31024 2.94759 38 A - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 35 3.86632 2.60290 3.69614 0.12762 39 U - - < 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 36 0.33880 3.37573 1.55843 3.15314 40 A - - < 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 37 0.84145 2.94452 0.79253 2.75533 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 38 2.85263 1.01801 2.62482 0.67621 42 U - - < 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 39 3.04441 1.69915 2.83730 0.34115 43 U - - < 1.38629 1.38629 1.38629 1.38629 0.05879 4.22702 3.15835 1.46634 0.26236 1.09861 0.40547 40 0.54390 2.56215 1.48825 2.14889 44 A - - < 1.38629 1.38629 1.38629 1.38629 0.19317 4.19872 1.82859 1.46634 0.26236 1.59158 0.22766 41 1.86020 1.68270 0.85194 1.46144 45 g - - < 1.38629 1.38629 1.38629 1.38629 0.73558 0.68677 4.04133 0.69452 0.69178 0.14721 1.98857 42 1.08638 1.88698 1.50929 1.23799 52 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 43 1.34599 1.61106 1.83833 0.96506 53 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 44 1.80648 2.29387 2.75149 0.39890 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.18260 4.22702 1.88187 1.46634 0.26236 1.09861 0.40547 45 0.60173 2.27825 1.91582 1.59726 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.30535 1.73082 2.45346 1.33836 0.30419 0.33289 1.26179 46 1.25012 2.20175 0.92893 1.57050 62 g - - _ 1.38629 1.38629 1.38629 1.38629 0.16426 4.14172 1.99816 1.46634 0.26236 1.22731 0.34684 47 1.62692 0.96588 1.53063 1.57785 63 c - - > 1.38629 1.38629 1.38629 1.38629 0.03578 4.04133 4.04133 1.46634 0.26236 0.31160 1.31781 48 2.30487 1.67051 2.37614 0.47938 64 U - - > 1.38629 1.38629 1.38629 1.38629 0.07621 2.84099 4.19872 0.45330 1.00930 0.52291 0.89843 49 0.49285 3.00091 1.27641 2.80774 66 A - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 50 0.78019 2.79288 0.89836 2.61457 67 a - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 51 2.98179 1.25084 2.74207 0.51317 68 U - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 52 3.35080 1.83341 3.16192 0.27085 69 U - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 53 0.14651 3.87688 2.43400 3.57978 70 A - - > 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 54 0.07442 3.93094 3.59455 3.70415 71 A - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 55 0.07442 3.93094 3.59455 3.70415 72 A - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 56 2.88248 4.01570 0.10657 3.60977 73 G - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 57 0.07442 3.93094 3.59455 3.70415 74 A - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 58 0.07442 3.93094 3.59455 3.70415 75 A - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 59 0.07442 3.93094 3.59455 3.70415 76 A - - , 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 60 2.31254 3.18895 0.21213 2.97764 77 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 61 0.90969 3.05861 0.70814 2.85011 78 g - - ) 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 62 2.88583 4.02772 0.10044 3.81949 79 G - - ) 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 63 3.79565 2.86182 3.48405 0.11689 80 U - - ) 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 64 0.07442 3.93094 3.59455 3.70415 81 A - - : 1.38629 1.38629 1.38629 1.38629 0.02963 4.22702 4.22702 1.46634 0.26236 1.09861 0.40547 65 3.37505 4.32896 0.07035 3.88578 82 G - - : 1.38629 1.38629 1.38629 1.38629 0.01492 4.21231 * 1.46634 0.26236 0.00000 * //