INFERNAL1/a [1.1.4 | Dec 2020] NAME D12-methyl ACC RF02950 DESC D12-methyl RNA STATES 201 NODES 57 CLEN 64 W 98 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 18:44:24 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 19 EFFN 2.212646 CKSUM 2354132048 NULL 0.000 0.000 0.000 0.000 GA 57.00 TC 57.00 NC 37.20 EFP7GF -9.4294 0.71906 ECMLC 0.66424 -8.33174 0.84747 1600000 533515 0.002249 ECMGC 0.42004 -17.85764 -4.83221 1600000 95093 0.004206 ECMLI 0.51703 -9.44339 1.85291 1600000 412742 0.002907 ECMGI 0.42590 -14.08733 -1.84987 1600000 73382 0.005451 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 98 138 -6.967 -8.213 -0.075 -4.666 IL 1 1 2 1 4 1 20 99 139 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 21 99 139 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 74 - G - - MR 3 2 3 5 3 1 20 98 138 -8.452 -0.017 -6.770 -1.802 -3.055 1.769 -2.443 D 4 2 3 5 3 0 17 96 136 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 20 98 138 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 73 - C - - MR 6 5 3 8 3 1 19 97 137 -8.452 -0.169 -3.216 -1.174 1.275 -2.006 -0.171 D 7 5 3 8 3 0 16 95 135 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 20 97 137 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 72 - A - - MR 9 8 3 11 3 1 19 96 136 -8.303 -0.019 -6.620 1.353 -1.383 -1.322 -0.595 D 10 8 3 11 3 0 16 94 134 -7.299 -0.628 -1.529 IR 11 11 3 11 3 1 19 96 136 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 71 - A - - MR 12 11 3 14 3 1 18 95 135 -8.452 -0.017 -6.770 1.479 -1.637 -1.557 -0.861 D 13 11 3 14 3 0 14 93 133 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 18 95 135 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 70 - G - - MR 15 14 3 17 3 1 17 94 134 -8.452 -0.017 -6.770 -1.802 -3.055 1.769 -2.443 D 16 14 3 17 3 0 13 92 132 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 17 94 134 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 69 - G - - MR 18 17 3 20 3 1 16 93 133 -8.452 -0.017 -6.770 -1.802 -3.055 1.769 -2.443 D 19 17 3 20 3 0 13 91 131 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 16 93 133 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 68 - G - - MR 21 20 3 23 3 1 15 92 132 -8.452 -0.017 -6.770 -1.802 -3.055 1.769 -2.443 D 22 20 3 23 3 0 12 90 130 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 15 92 132 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 67 - C - - MR 24 23 3 26 3 1 14 91 131 -8.452 -0.017 -6.770 -0.954 1.346 -1.955 -0.550 D 25 23 3 26 3 0 11 89 129 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 14 91 131 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 66 - G - - MR 27 26 3 29 3 1 13 90 130 -8.452 -0.017 -6.770 -1.802 -3.055 1.769 -2.443 D 28 26 3 29 3 0 11 88 128 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 13 90 130 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 65 - G - - MR 30 29 3 32 3 1 12 89 129 -8.452 -0.017 -6.770 -1.359 -2.424 1.631 -1.613 D 31 29 3 32 3 0 10 87 127 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 12 89 129 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 64 - G - - MR 33 32 3 35 3 1 11 88 128 -8.452 -0.017 -6.770 -1.802 -3.055 1.769 -2.443 D 34 32 3 35 3 0 10 86 126 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 12 88 128 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 63 - A - - MR 36 35 3 38 2 1 10 87 127 -8.481 -0.004 1.626 -2.115 -1.445 -1.662 D 37 35 3 38 2 0 9 86 126 -4.432 -0.068 IR 38 38 3 38 2 1 11 87 128 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 39 38 3 40 117 0 9 86 126 [ BEGL 14 ] - - - - - - S 40 39 1 41 4 0 0 59 99 -0.043 -6.891 -6.298 -6.938 [ MATP 15 ] 1 35 C G - - MP 41 40 1 45 6 2 2 59 99 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.779 -4.705 -4.430 -0.917 -3.099 -4.811 3.616 -3.932 -4.488 -0.708 -4.723 -2.656 0.391 -4.833 -0.812 -3.320 ML 42 40 1 45 6 1 1 57 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 43 40 1 45 6 1 1 57 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 44 40 1 45 6 0 0 53 94 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 45 45 5 45 6 1 1 58 98 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 46 46 6 46 5 1 1 58 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 2 34 G C - - MP 47 46 6 51 6 2 2 57 97 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -3.735 -2.562 -3.730 1.472 -4.376 -4.411 0.151 -4.121 -3.768 3.109 -4.173 0.538 -0.127 -3.738 -1.814 -2.649 ML 48 46 6 51 6 1 1 55 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 6 51 6 1 1 55 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 6 51 6 0 0 51 92 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 56 96 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 56 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 3 33 U A - - MP 53 52 6 57 6 2 2 55 95 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.438 -4.269 -4.249 -0.547 -3.139 -4.790 1.194 -3.852 -4.251 -0.327 -4.612 -2.160 3.434 -4.580 -0.809 -3.049 ML 54 52 6 57 6 1 1 53 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 53 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 49 90 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 54 94 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 54 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 4 32 U A - - MP 59 58 6 63 6 2 2 53 93 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.438 -4.269 -4.249 -0.547 -3.139 -4.790 1.194 -3.852 -4.251 -0.327 -4.612 -2.160 3.434 -4.580 -0.809 -3.049 ML 60 58 6 63 6 1 1 51 91 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 51 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 47 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 52 92 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 52 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 5 31 G C - - MP 65 64 6 69 6 2 2 51 91 -9.151 -4.419 -0.088 -7.867 -8.147 -8.542 -4.949 -3.193 -5.070 0.060 -5.524 -4.774 -0.837 -5.326 -4.460 3.684 -4.783 -0.901 -1.217 -4.603 -2.886 -3.944 ML 66 64 6 69 6 1 1 49 89 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 67 64 6 69 6 1 1 49 89 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 68 64 6 69 6 0 0 45 85 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 69 69 5 69 6 1 1 50 90 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 70 70 6 70 5 1 1 50 91 -1.741 -0.656 -6.553 -4.721 -5.827 0.000 0.000 0.000 0.000 [ MATP 20 ] 6 28 C G - - MP 71 70 6 75 6 2 2 49 89 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -3.968 -4.005 -3.846 -0.373 0.135 -4.395 3.327 -3.549 -3.885 -0.228 -4.251 -2.124 0.751 -4.127 -0.555 -2.797 ML 72 70 6 75 6 1 1 47 87 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 73 70 6 75 6 1 1 47 87 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 74 70 6 75 6 0 0 43 83 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 75 75 5 75 6 1 1 48 88 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 76 76 6 76 5 1 1 48 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 7 27 g c - - MP 77 76 6 81 6 2 2 47 87 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -3.200 -0.187 -3.227 1.608 -3.705 -3.964 0.489 -3.649 -3.359 2.793 -3.780 0.316 0.240 -3.253 -1.360 -2.242 ML 78 76 6 81 6 1 1 45 85 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 79 76 6 81 6 1 1 44 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 80 76 6 81 6 0 0 41 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 81 81 5 81 6 1 1 46 86 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 82 82 6 82 5 1 1 46 86 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 8 26 G C - - MP 83 82 6 87 4 2 2 45 85 -1.774 -7.267 -0.553 -5.681 -4.000 -2.724 -4.012 1.449 -4.603 -4.547 -0.029 -4.357 -3.935 3.285 -4.330 -0.357 -0.336 -3.970 -2.021 -2.908 ML 84 82 6 87 4 1 1 41 81 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 85 82 6 87 4 1 1 39 79 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 86 82 6 87 4 0 0 39 79 -4.568 -4.250 -2.265 -0.520 IL 87 87 5 87 4 1 1 46 86 -0.662 -1.845 -3.585 -7.322 0.000 0.000 0.000 0.000 IR 88 88 6 88 3 1 1 24 43 -2.176 -0.525 -3.581 0.000 0.000 0.000 0.000 [ MATL 23 ] 16 - a - - - ML 89 88 6 91 3 1 1 22 41 -8.020 -0.020 -6.674 0.713 -0.484 -0.200 -0.367 D 90 88 6 91 3 0 0 21 40 -6.583 -2.096 -0.404 IL 91 91 3 91 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 17 - c - - - ML 92 91 3 94 3 1 1 21 40 -8.020 -0.020 -6.674 -0.834 0.863 -1.641 0.378 D 93 91 3 94 3 0 0 20 39 -6.583 -1.056 -0.975 IL 94 94 3 94 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 18 - u - - - ML 95 94 3 97 3 1 1 20 39 -8.068 -0.019 -6.722 -0.806 0.227 -1.579 0.943 D 96 94 3 97 3 0 0 19 38 -6.174 -1.687 -0.566 IL 97 97 3 97 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 19 - U - - - ML 98 97 3 100 3 1 1 19 37 -8.068 -0.019 -6.722 -0.824 -1.178 -1.761 1.432 D 99 97 3 100 3 0 0 18 37 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 20 - G - - - ML 101 100 3 103 3 1 1 17 36 -8.068 -0.019 -6.722 -1.121 -2.560 1.639 -1.969 D 102 100 3 103 3 0 0 17 36 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 21 - C - - - ML 104 103 3 106 3 1 1 16 35 -8.068 -0.019 -6.722 -1.996 1.686 -2.826 -1.358 D 105 103 3 106 3 0 0 16 34 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 22 - U - - - ML 107 106 3 109 3 1 1 15 33 -8.068 -0.019 -6.722 -0.539 -0.315 -1.425 1.095 D 108 106 3 109 3 0 0 15 33 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 23 - a - - - ML 110 109 3 112 3 1 1 13 31 -8.068 -0.019 -6.722 0.798 0.099 -1.167 -0.425 D 111 109 3 112 3 0 0 13 32 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 24 - c - - - ML 113 112 3 115 2 1 1 1 1 * 0.000 -0.038 0.401 -0.478 -0.019 D 114 112 3 115 2 0 0 0 0 * 0.000 IL 115 115 3 115 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 32 ] - - - - - - E 116 115 3 -1 0 0 0 0 0 [ BEGR 33 ] - - - - - - S 117 39 1 118 3 0 0 42 61 -8.068 -0.019 -6.722 IL 118 118 2 118 3 1 1 45 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 36 - G - - - ML 119 118 2 121 3 1 1 42 61 -8.068 -0.019 -6.722 -1.802 -3.055 1.769 -2.443 D 120 118 2 121 3 0 0 40 60 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 44 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 37 - G - - - ML 122 121 3 124 3 1 1 41 60 -8.068 -0.019 -6.722 -1.802 -3.055 1.769 -2.443 D 123 121 3 124 3 0 0 39 59 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 43 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 38 - U - - - ML 125 124 3 127 3 1 1 40 59 -8.068 -0.019 -6.722 -1.680 -1.643 -2.423 1.670 D 126 124 3 127 3 0 0 38 58 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 39 - G - - - ML 128 127 3 130 3 1 1 38 58 -8.068 -0.019 -6.722 -1.802 -3.055 1.769 -2.443 D 129 127 3 130 3 0 0 37 56 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 40 - A - - - ML 131 130 3 133 3 1 1 37 56 -8.068 -0.019 -6.722 1.761 -2.582 -2.193 -2.146 D 132 130 3 133 3 0 0 36 55 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 41 - G - - - ML 134 133 3 136 5 1 1 36 55 -7.185 -0.037 -7.000 -7.212 -8.104 -1.309 -2.353 1.610 -1.520 D 135 133 3 136 5 0 0 35 54 -4.959 -0.803 -4.221 -2.596 -2.508 IL 136 136 3 136 5 1 1 37 56 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 42 62 c g - - MP 137 136 3 141 6 2 2 35 54 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -2.946 -2.531 -3.023 1.627 -2.806 -3.837 2.009 -3.157 -3.076 1.906 -3.570 0.004 1.086 -3.132 -0.520 -2.000 ML 138 136 3 141 6 1 1 34 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 139 136 3 141 6 1 1 34 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 140 136 3 141 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 141 141 5 141 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 142 142 6 142 5 1 1 35 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 43 61 C G - - MP 143 142 6 147 6 2 2 33 52 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.048 -3.988 -3.833 -0.197 -2.629 -4.322 3.201 -3.389 -3.852 0.036 -4.191 -1.950 1.585 -4.141 -0.297 -2.695 ML 144 142 6 147 6 1 1 32 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 6 147 6 1 1 32 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 6 147 6 0 0 29 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 33 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 44 60 c g - - MP 149 148 6 153 6 2 2 31 50 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -3.618 -3.335 -3.564 0.401 -2.709 -4.238 2.908 -3.322 -3.560 1.488 -3.990 -1.175 1.114 -3.782 -0.353 -2.424 ML 150 148 6 153 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 28 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 45 59 G C - - MP 155 154 6 159 6 2 2 29 48 -9.151 -9.090 -0.020 -7.867 -8.147 -8.542 -4.222 -2.818 -4.254 0.628 -4.962 -4.608 -0.336 -4.628 -4.080 3.412 -4.454 0.615 -0.621 -4.117 -2.333 -3.150 ML 156 154 6 159 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 46 58 G C - - MP 161 160 6 165 4 2 2 27 46 -7.060 -7.267 -0.049 -5.681 -4.949 -3.193 -5.070 0.060 -5.524 -4.774 -0.837 -5.326 -4.460 3.684 -4.783 -0.901 -1.217 -4.603 -2.886 -3.944 ML 162 160 6 165 4 1 1 28 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 4 1 1 28 47 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 164 160 6 165 4 0 0 27 46 -4.568 -4.250 -2.265 -0.520 IL 165 165 5 165 4 1 1 29 49 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 166 166 6 166 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 47 - C - - - ML 167 166 6 169 3 1 1 25 43 -8.068 -0.019 -6.722 -1.996 1.686 -2.826 -1.358 D 168 166 6 169 3 0 0 24 43 -6.174 -1.687 -0.566 IL 169 169 3 169 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 48 - A - - - ML 170 169 3 172 3 1 1 23 42 -8.068 -0.019 -6.722 1.761 -2.582 -2.193 -2.146 D 171 169 3 172 3 0 0 22 41 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 49 - c - - - ML 173 172 3 175 3 1 1 22 41 -8.068 -0.019 -6.722 -0.898 0.927 -1.714 0.330 D 174 172 3 175 3 0 0 21 40 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 50 - A - - - ML 176 175 3 178 3 1 1 21 40 -8.068 -0.019 -6.722 1.761 -2.582 -2.193 -2.146 D 177 175 3 178 3 0 0 20 39 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 51 - G - - - ML 179 178 3 181 3 1 1 20 39 -8.068 -0.019 -6.722 -1.802 -3.055 1.769 -2.443 D 180 178 3 181 3 0 0 19 38 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 52 - C - - - ML 182 181 3 184 3 1 1 19 37 -8.068 -0.019 -6.722 -0.740 1.061 -0.747 -0.477 D 183 181 3 184 3 0 0 18 37 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 53 - A - - - ML 185 184 3 187 3 1 1 17 36 -8.068 -0.019 -6.722 1.761 -2.582 -2.193 -2.146 D 186 184 3 187 3 0 0 17 36 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 54 - U - - - ML 188 187 3 190 3 1 1 16 35 -8.068 -0.019 -6.722 -0.984 -1.139 -1.437 1.417 D 189 187 3 190 3 0 0 16 34 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 55 - A - - - ML 191 190 3 193 3 1 1 15 33 -8.068 -0.019 -6.722 1.761 -2.582 -2.193 -2.146 D 192 190 3 193 3 0 0 15 33 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 56 - A - - - ML 194 193 3 196 3 1 1 13 31 -8.068 -0.019 -6.722 1.079 -0.607 -1.165 -0.351 D 195 193 3 196 3 0 0 13 32 -6.174 -1.687 -0.566 IL 196 196 3 196 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 57 - A - - - ML 197 196 3 199 2 1 1 1 1 * 0.000 1.301 -1.623 -0.428 -1.098 D 198 196 3 199 2 0 0 0 0 * 0.000 IL 199 199 3 199 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 56 ] - - - - - - E 200 199 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME D12-methyl ACC RF02950 DESC D12-methyl RNA LENG 64 MAXL 147 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 18:44:24 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 19 EFFN 3.038330 CKSUM 2354132048 STATS LOCAL MSV -7.6914 0.71906 STATS LOCAL VITERBI -8.8476 0.71906 STATS LOCAL FORWARD -3.6882 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.45098 1.41260 1.07478 1.71049 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 0.00000 * 1 3.53730 0.17248 3.34011 2.36553 1 C - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 2 1.63534 2.70165 0.41490 2.55603 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 3 3.34342 2.18595 3.12988 0.21246 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 4 3.34058 2.18571 3.12848 0.21270 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 5 2.78631 3.54799 0.12905 3.48555 5 G - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 6 3.01660 0.28184 2.83634 1.98054 6 C - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 7 1.29710 2.43693 0.62253 2.27632 7 G - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 8 1.65957 2.87396 0.37238 2.74553 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.36432 1.24231 4.09728 1.31467 0.31274 1.09861 0.40547 9 0.85775 1.72557 1.51584 1.72491 16 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07452 4.09728 2.89694 1.46634 0.26236 1.09861 0.40547 10 2.13996 0.70271 2.72247 1.13511 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03518 4.05794 4.05794 1.46634 0.26236 0.47137 0.97856 11 2.11177 1.18686 2.66189 0.68521 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 12 2.12277 2.39491 2.84031 0.31374 19 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 13 2.38074 3.48629 0.18470 3.08886 20 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 14 3.22001 0.13951 3.79119 2.69281 21 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 15 1.86734 1.62385 2.52269 0.56549 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 16 0.78044 1.27291 2.33138 1.80412 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 17 1.44974 1.04750 1.72163 1.44485 24 c - - _ 1.38629 1.38629 1.38629 1.38629 0.42145 1.11691 4.09728 0.09863 2.36533 1.09861 0.40547 18 2.97317 0.42628 2.68826 1.47872 26 C - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 19 2.51785 0.65051 2.24155 1.23343 27 C - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 20 1.68763 2.99238 0.35219 2.78506 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.16929 1.97245 4.09728 0.77732 0.61552 1.09861 0.40547 21 3.66693 0.15451 3.38756 2.47913 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 22 0.24164 3.31558 2.02165 3.08113 32 A - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 23 0.24174 3.31482 2.02153 3.08027 33 A - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 24 2.79166 0.55424 2.50850 1.26308 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 25 2.63419 3.48508 0.15141 3.26816 35 G - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 26 3.01140 3.92810 0.10436 3.50018 36 G - - - 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 27 3.01140 3.92810 0.10436 3.50018 37 G - - - 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 28 2.90427 2.81914 3.43188 0.15873 38 U - - - 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 29 3.01140 3.92810 0.10436 3.50018 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 30 0.11118 3.54885 3.24369 3.28499 40 A - - - 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 31 2.57587 3.32287 0.20049 2.66593 41 G - - - 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 32 1.47712 1.27131 1.19056 1.67563 42 g - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 33 2.89004 0.45602 2.65730 1.42508 43 C - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 34 2.44566 0.63694 1.59224 1.70953 44 C - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 35 2.33072 3.11541 0.21370 2.97948 45 G - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 36 2.78634 3.54803 0.12904 3.48561 46 G - - < 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 37 3.22001 0.13951 3.79119 2.69281 47 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 38 0.11118 3.54885 3.24369 3.28499 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 39 2.19655 0.65776 2.78622 1.17392 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 40 0.11118 3.54885 3.24369 3.28499 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 41 3.01140 3.92810 0.10436 3.50018 51 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 42 2.11630 0.53026 1.96491 1.89112 52 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 43 0.11118 3.54885 3.24369 3.28499 53 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 44 2.29466 2.36710 2.54512 0.31884 54 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 45 0.11118 3.54885 3.24369 3.28499 55 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 46 0.57477 1.83314 2.32785 1.71619 56 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 47 0.42157 2.71207 1.69272 2.36907 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 48 3.66955 0.15433 3.38879 2.47962 58 C - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 49 3.20138 0.33724 2.93360 1.64842 59 C - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 50 1.95865 1.69340 0.57268 2.19781 60 G - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 51 1.60211 2.82002 0.40374 2.64357 61 G - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 52 1.90413 1.38846 1.15770 1.24695 62 g - - > 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 53 0.19929 3.11980 2.54714 2.84366 63 A - - : 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 54 3.01140 3.92810 0.10436 3.50018 64 G - - : 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 55 2.61889 3.38137 0.18773 2.74458 65 G - - : 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 56 3.01140 3.92810 0.10436 3.50018 66 G - - : 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 57 2.25182 0.35572 3.01383 1.93088 67 C - - : 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 58 3.01140 3.92810 0.10436 3.50018 68 G - - : 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 59 3.01140 3.92810 0.10436 3.50018 69 G - - : 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 60 3.01140 3.92810 0.10436 3.50018 70 G - - : 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 61 0.29516 2.71096 2.67227 2.12007 71 A - - : 1.38629 1.38629 1.38629 1.38629 0.16929 4.09728 1.97245 1.46634 0.26236 1.09861 0.40547 62 0.37988 2.49609 2.46851 1.90423 72 A - - : 1.38629 1.38629 1.38629 1.38629 0.03861 3.96660 3.96660 1.46634 0.26236 0.21423 1.64591 63 2.44959 0.41098 3.04947 1.59312 73 C - - : 1.38629 1.38629 1.38629 1.38629 0.03380 4.09728 4.09728 1.46634 0.26236 1.09861 0.40547 64 3.01140 3.92810 0.10436 3.50018 74 G - - : 1.38629 1.38629 1.38629 1.38629 0.01704 4.08052 * 1.46634 0.26236 0.00000 * //