INFERNAL1/a [1.1.4 | Dec 2020] NAME COG3860 ACC RF02940 DESC COG3860 RNA STATES 171 NODES 52 CLEN 54 W 82 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 21:17:27 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 42 EFFN 5.016724 CKSUM 1650193843 NULL 0.000 0.000 0.000 0.000 GA 42.50 TC 42.50 NC 41.60 EFP7GF -12.9402 0.71921 ECMLC 0.77248 -7.24371 0.83118 1600000 614010 0.001954 ECMGC 0.36842 -22.08667 -6.65277 1600000 117907 0.003393 ECMLI 0.60949 -8.51983 1.17196 1600000 441135 0.002720 ECMGI 0.38480 -17.76793 -3.82607 1600000 85504 0.004678 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 82 111 -7.717 -8.962 -0.087 -4.272 IL 1 1 2 1 4 1 18 83 112 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 20 83 112 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 66 - a - - MR 3 2 3 5 3 1 20 82 111 -9.131 -0.011 -7.449 0.550 -0.970 -0.290 0.271 D 4 2 3 5 3 0 15 80 109 -6.878 -0.923 -1.108 IR 5 5 3 5 3 1 18 82 111 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 65 - c - - MR 6 5 3 8 3 1 19 81 110 -9.171 -0.011 -7.489 -0.377 0.653 -1.454 0.370 D 7 5 3 8 3 0 13 79 108 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 18 81 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 64 - C - - MR 9 8 3 11 3 1 18 80 109 -9.171 -0.011 -7.489 -1.255 1.512 -2.687 -0.802 D 10 8 3 11 3 0 13 78 107 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 17 80 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 63 - G - - MR 12 11 3 14 3 1 17 79 108 -9.171 -0.011 -7.489 -3.207 -4.615 1.921 -3.949 D 13 11 3 14 3 0 12 77 106 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 16 79 108 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 62 - U - - MR 15 14 3 17 3 1 16 78 107 -9.171 -0.011 -7.489 -3.089 -2.831 -3.870 1.877 D 16 14 3 17 3 0 12 76 105 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 15 78 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 61 - C - - MR 18 17 3 20 3 1 16 77 106 -9.171 -0.011 -7.489 -3.691 1.900 -4.425 -2.789 D 19 17 3 20 3 0 11 75 104 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 15 77 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 60 - C - - MR 21 20 3 23 3 1 15 76 105 -9.171 -0.011 -7.489 -3.691 1.900 -4.425 -2.789 D 22 20 3 23 3 0 10 74 103 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 14 76 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 59 - A - - MR 24 23 3 26 3 1 14 75 104 -9.171 -0.011 -7.489 1.918 -4.042 -3.533 -3.742 D 25 23 3 26 3 0 10 73 102 -6.390 -1.568 -0.620 IR 26 26 3 26 3 1 13 75 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 9 ] - 58 - A - - MR 27 26 3 29 3 1 13 74 103 -9.171 -0.011 -7.489 1.789 -3.091 -1.827 -2.791 D 28 26 3 29 3 0 9 72 101 -6.390 -1.568 -0.620 IR 29 29 3 29 3 1 13 74 103 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 10 ] - 57 - A - - MR 30 29 3 32 3 1 12 73 102 -9.171 -0.011 -7.489 1.853 -3.426 -2.458 -3.149 D 31 29 3 32 3 0 9 71 100 -6.390 -1.568 -0.620 IR 32 32 3 32 3 1 12 73 102 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 56 - U - - MR 33 32 3 35 3 1 11 72 101 -9.171 -0.011 -7.489 -3.089 -2.831 -3.870 1.877 D 34 32 3 35 3 0 8 70 99 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 11 72 101 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 55 - C - - MR 36 35 3 38 3 1 10 71 100 -9.171 -0.011 -7.489 -3.691 1.900 -4.425 -2.789 D 37 35 3 38 3 0 8 69 98 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 10 71 100 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 54 - G - - MR 39 38 3 41 3 1 9 70 99 -1.936 -0.448 -7.489 -3.207 -4.615 1.921 -3.949 D 40 38 3 41 3 0 7 68 97 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 9 69 98 -3.243 -0.198 -5.481 0.000 0.000 0.000 0.000 [ MATR 14 ] - 52 - A - - MR 42 41 3 44 2 1 8 68 97 -9.340 -0.002 1.054 -0.678 -1.101 -0.265 D 43 41 3 44 2 0 7 67 96 -4.432 -0.068 IR 44 44 3 44 2 1 8 69 98 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 15 ] - - - - - - B 45 44 3 46 99 0 7 67 96 [ BEGL 16 ] - - - - - - S 46 45 1 47 4 0 0 30 49 -0.031 -7.362 -6.770 -7.410 [ MATP 17 ] 1 17 c g - - MP 47 46 1 51 6 2 2 30 49 -9.524 -9.463 -0.016 -8.240 -8.519 -8.914 -1.502 -1.931 -1.934 1.178 -1.404 -1.127 1.668 -1.829 -2.001 1.592 -2.571 -0.405 1.390 -2.073 -0.154 -0.686 ML 48 46 1 51 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 49 46 1 51 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 50 46 1 51 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 51 51 5 51 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 52 52 6 52 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 2 16 G C - - MP 53 52 6 57 6 2 2 28 47 -9.524 -9.463 -0.016 -8.240 -8.519 -8.914 -6.348 -3.893 -6.821 -0.961 -7.419 -5.287 -2.391 -7.025 -5.244 3.866 -5.499 -1.692 -2.751 -5.475 -4.553 -5.677 ML 54 52 6 57 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 55 52 6 57 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 56 52 6 57 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 57 57 5 57 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 58 58 6 58 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 3 15 G C - - MP 59 58 6 63 6 2 2 26 45 -9.524 -9.463 -0.025 -6.696 -8.519 -8.914 -6.348 -3.893 -6.821 -0.961 -7.419 -5.287 -2.391 -7.025 -5.244 3.866 -5.499 -1.692 -2.751 -5.475 -4.553 -5.677 ML 60 58 6 63 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 61 58 6 63 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 62 58 6 63 6 0 0 24 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 63 63 5 63 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 64 64 6 64 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 4 14 U A - - MP 65 64 6 69 4 2 2 24 43 -7.839 -8.046 -0.028 -6.460 -6.494 -6.347 -6.063 -2.569 -4.642 -6.416 -0.326 -5.456 -6.052 -2.537 -6.326 -4.215 3.848 -6.505 -2.257 -4.443 ML 66 64 6 69 4 1 1 26 44 -3.874 -4.056 -0.461 -2.786 0.176 -0.366 -0.406 0.422 MR 67 64 6 69 4 1 1 25 44 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 68 64 6 69 4 0 0 24 43 -4.568 -4.250 -2.265 -0.520 IL 69 69 5 69 4 1 1 27 46 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 70 70 6 70 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 5 - C - - - ML 71 70 6 73 3 1 1 22 40 -8.824 -0.011 -7.478 -3.691 1.900 -4.425 -2.789 D 72 70 6 73 3 0 0 21 40 -6.174 -1.687 -0.566 IL 73 73 3 73 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 6 - g - - - ML 74 73 3 76 3 1 1 20 39 -8.824 -0.011 -7.478 -0.203 -0.504 0.659 -0.240 D 75 73 3 76 3 0 0 20 39 -6.174 -1.687 -0.566 IL 76 76 3 76 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 7 - G - - - ML 77 76 3 79 3 1 1 19 38 -8.824 -0.011 -7.478 -1.102 -2.456 1.652 -2.256 D 78 76 3 79 3 0 0 19 38 -6.174 -1.687 -0.566 IL 79 79 3 79 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 8 - C - - - ML 80 79 3 82 3 1 1 18 37 -8.824 -0.011 -7.478 -3.691 1.900 -4.425 -2.789 D 81 79 3 82 3 0 0 18 36 -6.174 -1.687 -0.566 IL 82 82 3 82 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 9 - A - - - ML 83 82 3 85 3 1 1 17 35 -8.824 -0.011 -7.478 1.918 -4.042 -3.533 -3.742 D 84 82 3 85 3 0 0 17 35 -6.174 -1.687 -0.566 IL 85 85 3 85 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 10 - G - - - ML 86 85 3 88 3 1 1 16 34 -8.824 -0.011 -7.478 -3.207 -4.615 1.921 -3.949 D 87 85 3 88 3 0 0 16 34 -6.174 -1.687 -0.566 IL 88 88 3 88 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 11 - U - - - ML 89 88 3 91 3 1 1 14 33 -8.824 -0.104 -3.889 -0.575 -1.695 -2.232 1.489 D 90 88 3 91 3 0 0 14 33 -6.174 -1.687 -0.566 IL 91 91 3 91 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 12 - U - - - ML 92 91 3 94 3 1 1 13 31 -8.731 -0.012 -7.385 -2.163 -1.446 -2.911 1.712 D 93 91 3 94 3 0 0 13 31 -7.202 -1.073 -0.949 IL 94 94 3 94 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 13 - C - - - ML 95 94 3 97 2 1 1 1 1 * 0.000 -3.629 1.895 -4.371 -2.732 D 96 94 3 97 2 0 0 0 0 * 0.000 IL 97 97 3 97 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 98 97 3 -1 0 0 0 0 0 [ BEGR 31 ] - - - - - - S 99 45 1 100 3 0 0 50 79 -8.824 -0.011 -7.478 IL 100 100 2 100 3 1 1 52 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 18 - A - - - ML 101 100 2 103 3 1 1 50 79 -8.824 -0.011 -7.478 1.806 -2.935 -2.813 -2.119 D 102 100 2 103 3 0 0 48 77 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 51 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 19 - G - - - ML 104 103 3 106 3 1 1 49 78 -8.824 -0.011 -7.478 -3.207 -4.615 1.921 -3.949 D 105 103 3 106 3 0 0 47 76 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 50 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 20 - G - - - ML 107 106 3 109 3 1 1 48 77 -8.824 -0.011 -7.478 -1.509 -2.921 1.702 -1.928 D 108 106 3 109 3 0 0 46 75 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 49 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 21 - C - - - ML 110 109 3 112 3 1 1 47 76 -8.824 -0.011 -7.478 -3.691 1.900 -4.425 -2.789 D 111 109 3 112 3 0 0 45 74 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 48 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 22 - G - - - ML 113 112 3 115 3 1 1 46 75 -8.824 -0.011 -7.478 0.205 -1.928 1.073 -1.057 D 114 112 3 115 3 0 0 44 73 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 47 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 23 - U - - - ML 116 115 3 118 3 1 1 45 74 -8.824 -0.011 -7.478 -2.072 -0.999 -2.827 1.642 D 117 115 3 118 3 0 0 43 72 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 46 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 24 - C - - - ML 119 118 3 121 3 1 1 44 73 -8.824 -0.011 -7.478 -2.693 1.731 -3.554 -1.183 D 120 118 3 121 3 0 0 42 71 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 45 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 25 - G - - - ML 122 121 3 124 3 1 1 43 72 -8.824 -0.011 -7.478 -1.113 -3.257 1.715 -2.734 D 123 121 3 124 3 0 0 41 70 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 44 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 26 - C - - - ML 125 124 3 127 3 1 1 42 71 -8.824 -0.011 -7.478 -2.915 1.783 -3.742 -1.511 D 126 124 3 127 3 0 0 40 69 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 43 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 27 - C - - - ML 128 127 3 130 3 1 1 41 70 -8.824 -0.319 -2.350 -1.881 1.375 -2.807 -0.012 D 129 127 3 130 3 0 0 40 69 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 43 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 28 - G - - - ML 131 130 3 133 5 1 1 40 69 -4.754 -0.075 -7.403 -7.616 -8.507 -0.164 -1.769 1.187 -0.896 D 132 130 3 133 5 0 0 39 68 -6.444 -0.615 -3.616 -4.080 -2.359 IL 133 133 3 133 5 1 1 41 70 -2.580 -0.431 -4.258 -6.091 -5.364 0.000 0.000 0.000 0.000 [ MATP 43 ] 30 51 c g - - MP 134 133 3 138 6 2 2 39 68 -9.477 -9.416 -0.016 -8.192 -8.472 -8.867 -3.514 -3.289 -3.568 0.513 -2.854 -4.379 2.618 -3.408 -3.541 1.621 -4.051 -0.650 1.556 -3.713 -0.297 -2.398 ML 135 133 3 138 6 1 1 38 67 -6.493 -6.839 -1.013 -1.248 -6.689 -4.218 0.767 -0.662 -0.379 -0.156 MR 136 133 3 138 6 1 1 37 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 3 138 6 0 0 34 63 -9.628 -8.327 -4.124 -4.806 -4.823 -0.206 IL 138 138 5 138 6 1 1 39 68 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 39 68 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 31 50 c g - - MP 140 139 6 144 6 2 2 37 66 -9.492 -9.431 -0.016 -8.208 -8.487 -8.883 -3.504 -3.356 -3.567 0.934 -2.815 -4.386 2.415 -3.386 -3.527 1.169 -4.045 -1.225 2.129 -3.731 -0.436 -2.402 ML 141 139 6 144 6 1 1 36 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 35 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 32 61 -9.628 -8.327 -4.124 -4.806 -4.823 -0.206 IL 144 144 5 144 6 1 1 37 66 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 37 66 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 32 49 c g - - MP 146 145 6 150 6 2 2 35 64 -9.492 -9.431 -0.016 -8.208 -8.487 -8.883 -3.643 -3.410 -3.681 0.730 -2.907 -4.480 2.666 -3.480 -3.647 1.556 -4.149 -1.223 1.592 -3.838 -0.500 -2.491 ML 147 145 6 150 6 1 1 33 62 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 33 62 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 30 59 -9.628 -8.327 -4.124 -4.806 -4.823 -0.206 IL 150 150 5 150 6 1 1 35 64 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 35 64 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 33 48 C G - - MP 152 151 6 156 4 2 2 33 62 -1.892 -2.331 -0.943 -6.417 -4.543 -4.377 -4.364 -0.454 -3.163 -4.924 3.356 -3.897 -4.342 0.845 -4.716 -2.176 0.880 -4.656 -0.777 -3.145 ML 153 151 6 156 4 1 1 30 59 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 4 1 1 29 58 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 155 151 6 156 4 0 0 28 57 -5.116 -4.798 -2.813 -0.335 IL 156 156 5 156 4 1 1 34 62 -0.930 -1.357 -3.663 -7.400 0.000 0.000 0.000 0.000 IR 157 157 6 157 3 1 1 28 55 -0.994 -1.041 -6.421 0.000 0.000 0.000 0.000 [ MATL 47 ] 38 - u - - - ML 158 157 6 160 3 1 1 16 34 -8.766 -0.012 -7.420 0.072 -0.457 -0.006 0.292 D 159 157 6 160 3 0 0 15 34 -6.903 -2.416 -0.314 IL 160 160 3 160 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 39 - u - - - ML 161 160 3 163 3 1 1 14 33 -8.766 -0.012 -7.420 0.014 -0.075 -1.019 0.630 D 162 160 3 163 3 0 0 14 33 -6.903 -0.776 -1.294 IL 163 163 3 163 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 40 - a - - - ML 164 163 3 166 3 1 1 12 31 -8.824 -0.034 -5.547 0.459 -0.210 -1.119 0.379 D 165 163 3 166 3 0 0 13 32 -6.174 -1.687 -0.566 IL 166 166 3 166 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 41 - a - - - ML 167 166 3 169 2 1 1 1 1 * 0.000 0.665 -0.316 -0.783 0.043 D 168 166 3 169 2 0 0 0 0 * 0.000 IL 169 169 3 169 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 51 ] - - - - - - E 170 169 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME COG3860 ACC RF02940 DESC COG3860 RNA LENG 54 MAXL 125 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 21:17:27 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 42 EFFN 7.580200 CKSUM 1650193843 STATS LOCAL MSV -7.4909 0.71921 STATS LOCAL VITERBI -8.2268 0.71921 STATS LOCAL FORWARD -3.7599 0.71921 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.55419 1.15050 1.31073 1.59683 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 0.00000 * 1 1.66632 1.28537 1.31146 1.32771 1 c - - < 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 2 3.59213 4.61706 0.04868 4.59572 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 3 3.58717 4.60858 0.04904 4.58400 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 4 4.68041 3.54543 4.70866 0.04830 4 U - - < 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 5 4.45712 0.04211 4.88350 3.81373 5 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 6 1.60338 1.73935 0.85107 1.62866 6 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 7 2.27337 3.23990 0.20036 3.23323 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 8 4.45712 0.04211 4.88350 3.81373 8 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 9 0.03355 4.71293 4.33569 4.51689 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 10 4.06545 5.09124 0.03418 4.57558 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 11 1.85566 2.90512 3.32137 0.28395 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.08998 4.73668 2.56026 1.46634 0.26236 1.09861 0.40547 12 3.27860 2.53943 3.79415 0.14977 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01900 4.66570 4.66570 1.46634 0.26236 0.59705 0.79947 13 4.42119 0.04364 4.85370 3.77754 13 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03135 4.71126 3.82258 1.46634 0.26236 0.41731 1.07533 14 0.05124 5.02211 3.40685 4.58411 14 A - - > 1.38629 1.38629 1.38629 1.38629 0.01792 4.72404 4.72404 1.46634 0.26236 0.60015 0.79568 15 4.65162 0.06128 4.48082 3.25524 15 C - - > 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 16 4.64537 0.06143 4.47731 3.25411 16 C - - > 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 17 1.50866 1.33443 1.29059 1.42554 17 g - - > 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 18 0.09793 3.78782 3.74524 3.05738 18 A - - - 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 19 4.06545 5.09124 0.03418 4.57558 19 G - - - 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 20 2.60755 3.69725 0.16981 2.85304 20 G - - - 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 21 4.45712 0.04211 4.88350 3.81373 21 C - - - 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 22 1.25738 3.01525 0.56684 2.31010 22 G - - - 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 23 3.23077 2.15780 3.75191 0.19672 23 U - - - 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 24 3.71247 0.14076 4.28181 2.37446 24 C - - - 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 25 2.25944 4.02083 0.16005 3.66690 25 G - - - 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 26 3.87778 0.10955 4.40480 2.64724 26 C - - - 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 27 3.07721 0.36909 3.75308 1.43085 27 C - - - 1.38629 1.38629 1.38629 1.38629 0.25924 4.73668 1.51597 1.46634 0.26236 1.09861 0.40547 28 1.56913 2.86557 0.47738 2.16792 28 G - - - 1.38629 1.38629 1.38629 1.38629 0.06401 2.97805 4.49990 0.39095 1.12829 0.29677 1.35951 29 2.32932 0.85068 1.44063 1.43240 30 c - - < 1.38629 1.38629 1.38629 1.38629 0.01850 4.69235 4.69235 1.46634 0.26236 2.07255 0.13452 30 2.02938 1.01893 1.81119 1.06670 31 c - - < 1.38629 1.38629 1.38629 1.38629 0.01850 4.69235 4.69235 1.46634 0.26236 2.07255 0.13452 31 2.20891 0.81683 1.54978 1.44368 32 c - - < 1.38629 1.38629 1.38629 1.38629 0.01850 4.69235 4.69235 1.46634 0.26236 2.07255 0.13452 32 3.25060 0.33857 2.11450 2.05752 33 C - - < 1.38629 1.38629 1.38629 1.38629 0.35762 1.23274 4.69235 0.85784 0.55178 2.07255 0.13452 33 1.36155 1.71997 1.35408 1.18260 38 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01850 4.69235 4.69235 1.46634 0.26236 2.07255 0.13452 34 1.39226 1.42224 2.16329 0.92794 39 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01850 4.69235 4.69235 1.46634 0.26236 0.28999 1.37940 35 1.04237 1.52763 2.26700 1.11868 40 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03562 4.73668 3.64097 1.46634 0.26236 1.09861 0.40547 36 0.89040 1.60164 1.97990 1.38685 41 a - - _ 1.38629 1.38629 1.38629 1.38629 0.77449 0.72153 2.93651 0.78123 0.61220 0.51199 0.91455 37 2.26594 2.18155 0.30881 3.01428 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.01850 4.69235 4.69235 1.46634 0.26236 2.07255 0.13452 38 1.60290 1.64148 0.74876 2.02464 49 g - - > 1.38629 1.38629 1.38629 1.38629 0.01850 4.69235 4.69235 1.46634 0.26236 2.07255 0.13452 39 1.17654 1.93395 0.93231 1.87447 50 g - - > 1.38629 1.38629 1.38629 1.38629 0.04054 4.69235 3.48792 1.46634 0.26236 2.07255 0.13452 40 1.62424 1.59062 0.75497 2.04704 51 g - - > 1.38629 1.38629 1.38629 1.38629 0.01891 4.67072 4.67072 1.46634 0.26236 0.21636 1.63704 41 0.59712 1.89372 2.25897 1.63663 52 A - - : 1.38629 1.38629 1.38629 1.38629 0.37962 1.18054 4.73668 0.05615 2.90765 1.09861 0.40547 42 4.06545 5.09124 0.03418 4.57558 54 G - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 43 4.45712 0.04211 4.88350 3.81373 55 C - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 44 4.04125 3.80444 4.59130 0.05128 56 U - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 45 0.07156 4.18354 3.31928 4.03766 57 A - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 46 0.11050 3.93122 2.77767 3.78072 58 A - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 47 0.03355 4.71293 4.33569 4.51689 59 A - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 48 4.45712 0.04211 4.88350 3.81373 60 C - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 49 4.45712 0.04211 4.88350 3.81373 61 C - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 50 4.04125 3.80444 4.59130 0.05128 62 U - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 51 4.06545 5.09124 0.03418 4.57558 63 G - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 52 2.41244 0.27158 3.61657 2.10903 64 C - - : 1.38629 1.38629 1.38629 1.38629 0.01769 4.73668 4.73668 1.46634 0.26236 1.09861 0.40547 53 1.72932 0.85666 2.55742 1.13783 65 c - - : 1.38629 1.38629 1.38629 1.38629 0.05031 4.73668 3.21142 1.46634 0.26236 1.09861 0.40547 54 0.97753 2.16841 1.58241 1.19098 66 a - - : 1.38629 1.38629 1.38629 1.38629 0.00918 4.69554 * 1.46634 0.26236 0.00000 * //