INFERNAL1/a [1.1.4 | Dec 2020] NAME Actino-ugpB ACC RF02927 DESC Actino-ugpB RNA STATES 192 NODES 56 CLEN 61 W 282 ALPH RNA RF no CONS yes MAP yes DATE Mon Oct 1 22:24:41 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 12 EFFN 6.096680 CKSUM 2770856126 NULL 0.000 0.000 0.000 0.000 GA 42.50 TC 42.50 NC 40.90 EFP7GF -13.4233 0.71906 ECMLC 0.53536 -10.00236 1.48022 1600000 560955 0.002139 ECMGC 0.35154 -21.51783 -5.57320 1600000 108725 0.003679 ECMLI 0.51716 -8.61563 2.83398 1600000 447456 0.002682 ECMGI 0.37876 -16.57540 -2.80448 1600000 73669 0.005430 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 0 1 282 555 -8.075 -8.282 -0.024 -6.696 IL 1 1 2 1 4 2 27 284 557 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 27 284 556 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 2 27 282 555 -9.034 -0.010 -7.688 -3.525 -4.965 1.937 -4.265 D 4 2 3 5 3 0 22 280 552 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 26 283 555 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 2 26 281 554 -9.034 -0.010 -7.688 -3.441 -3.140 -4.228 1.903 D 7 5 3 8 3 0 21 279 551 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 25 282 555 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - C - - - ML 9 8 3 11 3 2 25 280 553 -9.034 -0.010 -7.688 -4.057 1.922 -4.736 -3.134 D 10 8 3 11 3 0 20 278 551 -6.174 -1.687 -0.566 IL 11 11 3 11 3 1 24 281 554 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - G - - - ML 12 11 3 14 3 2 24 279 552 -9.034 -0.010 -7.688 -1.717 -1.002 1.570 -2.139 D 13 11 3 14 3 0 20 277 550 -6.174 -1.687 -0.566 IL 14 14 3 14 3 1 24 280 553 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - A - - - ML 15 14 3 17 3 1 23 278 551 -9.034 -0.083 -4.212 1.936 -4.402 -3.874 -4.118 D 16 14 3 17 3 0 19 276 549 -6.174 -1.687 -0.566 IL 17 17 3 17 3 1 23 279 552 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - a - - - ML 18 17 3 20 3 1 23 277 550 -8.961 -0.010 -7.615 0.590 -1.247 -0.370 0.378 D 19 17 3 20 3 0 18 276 548 -7.140 -0.628 -1.532 IL 20 20 3 20 3 1 22 278 551 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 22 276 549 -9.034 -0.010 -7.688 1.096 -0.416 -0.663 -1.054 D 22 20 3 23 3 0 16 274 547 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 21 277 550 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - A - - - ML 24 23 3 26 3 1 21 276 548 -9.034 -0.010 -7.688 1.642 -2.921 -0.784 -2.587 D 25 23 3 26 3 0 16 273 546 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 20 276 549 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 20 275 547 -9.034 -0.010 -7.688 -3.525 -4.965 1.937 -4.265 D 28 26 3 29 3 0 15 272 545 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 19 275 548 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 19 274 546 -9.374 -0.009 -7.692 -0.817 -3.279 1.671 -2.776 D 31 29 3 32 3 0 14 272 544 -5.620 -0.734 -1.403 IL 32 32 3 32 3 1 18 274 546 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 88 - G - - MR 33 32 3 35 3 1 19 273 545 -9.374 -0.009 -7.692 -2.032 -2.997 1.670 -1.155 D 34 32 3 35 3 0 13 270 543 -6.390 -1.568 -0.620 IR 35 35 3 35 3 1 17 273 545 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 87 - A - - MR 36 35 3 38 3 1 18 272 544 -9.374 -0.009 -7.692 1.557 -0.784 -2.319 -1.850 D 37 35 3 38 3 0 12 269 542 -6.390 -1.568 -0.620 IR 38 38 3 38 3 1 17 272 544 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 86 - A - - MR 39 38 3 41 3 1 17 271 543 -9.374 -0.009 -7.692 1.034 -0.285 -1.658 -0.294 D 40 38 3 41 3 0 11 268 541 -6.390 -1.568 -0.620 IR 41 41 3 41 3 1 16 271 543 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 14 ] - 85 - a - - MR 42 41 3 44 3 1 16 270 542 -9.374 -0.009 -7.692 0.590 -0.438 -0.266 -0.113 D 43 41 3 44 3 0 11 267 540 -6.390 -1.568 -0.620 IR 44 44 3 44 3 1 15 270 542 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 15 ] - 84 - G - - MR 45 44 3 47 3 1 15 269 541 -9.374 -0.009 -7.692 -0.204 -2.950 1.496 -2.454 D 46 44 3 47 3 0 10 266 539 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 14 269 541 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 83 - a - - MR 48 47 3 50 3 1 14 268 540 -9.374 -0.009 -7.692 0.687 0.099 -0.443 -0.778 D 49 47 3 50 3 0 9 265 538 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 13 268 540 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 82 - G - - MR 51 50 3 53 3 1 13 267 539 -9.374 -0.009 -7.692 -0.513 -3.106 1.594 -2.608 D 52 50 3 53 3 0 9 264 537 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 13 267 539 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 81 - G - - MR 54 53 3 56 3 1 12 266 538 -9.374 -0.009 -7.692 0.302 -1.593 1.066 -1.547 D 55 53 3 56 3 0 8 263 536 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 12 266 539 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 80 - c - - MR 57 56 3 59 3 1 11 265 537 -9.374 -0.009 -7.692 0.688 0.753 -2.085 -1.097 D 58 56 3 59 3 0 7 262 535 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 11 265 538 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 79 - U - - MR 60 59 3 62 3 1 11 264 536 -9.374 -0.009 -7.692 -1.065 -0.220 -0.871 1.082 D 61 59 3 62 3 0 7 261 534 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 10 264 537 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 78 - A - - MR 63 62 3 65 3 1 10 263 535 -9.374 -0.009 -7.692 1.535 -2.137 -2.239 -0.592 D 64 62 3 65 3 0 6 260 533 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 9 263 536 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 77 - C - - MR 66 65 3 68 3 1 9 262 534 -9.374 -0.009 -7.692 -4.057 1.922 -4.736 -3.134 D 67 65 3 68 3 0 5 259 532 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 8 262 535 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 76 - G - - MR 69 68 3 71 3 1 8 261 533 -9.374 -0.009 -7.692 -3.525 -4.965 1.937 -4.265 D 70 68 3 71 3 0 5 258 531 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 8 261 534 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 75 - G - - MR 72 71 3 74 3 1 7 260 532 -9.374 -0.009 -7.692 -3.525 -4.965 1.937 -4.265 D 73 71 3 74 3 0 4 258 530 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 7 260 533 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 74 - C - - MR 75 74 3 77 3 1 6 259 531 -9.374 -0.009 -7.692 -4.057 1.922 -4.736 -3.134 D 76 74 3 77 3 0 4 257 530 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 6 259 532 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 73 - c - - MR 78 77 3 80 2 1 5 258 530 -9.570 -0.002 0.018 0.428 -1.674 0.410 D 79 77 3 80 2 0 4 257 529 -4.432 -0.068 IR 80 80 3 80 2 1 5 258 531 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 27 ] - - - - - - B 81 80 3 82 126 0 4 257 529 [ BEGL 28 ] - - - - - - S 82 81 1 83 4 0 0 236 509 -0.028 -7.509 -6.917 -7.557 [ MATP 29 ] 11 49 a u - - MP 83 82 1 87 6 2 2 236 509 -9.645 -9.584 -0.015 -8.361 -8.641 -9.036 -4.565 -3.245 -4.581 2.876 -5.763 -5.708 -1.063 -4.904 -4.512 2.718 -4.991 -0.722 -1.292 -4.867 -3.032 -3.383 ML 84 82 1 87 6 1 1 232 505 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 85 82 1 87 6 1 1 231 504 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 86 82 1 87 6 0 0 222 495 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 87 87 5 87 6 1 1 235 508 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 88 88 6 88 5 1 1 235 508 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 12 48 C G - - MP 89 88 6 93 6 2 2 234 507 -9.645 -9.584 -0.015 -8.361 -8.641 -9.036 -6.869 -6.971 -6.115 -3.166 -4.514 -6.223 3.907 -5.602 -6.367 -3.113 -6.243 -5.086 -1.370 -6.788 -2.409 -5.170 ML 90 88 6 93 6 1 1 230 503 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 91 88 6 93 6 1 1 229 501 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 92 88 6 93 6 0 0 218 491 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 93 93 5 93 6 1 1 233 505 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 94 94 6 94 5 1 1 233 505 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 13 47 A U - - MP 95 94 6 99 6 2 2 232 505 -9.645 -9.584 -0.015 -8.361 -8.641 -9.036 -4.767 -3.484 -4.893 3.521 -6.289 -7.004 -1.762 -4.996 -4.589 1.557 -5.199 -0.832 -1.937 -5.761 -3.679 -3.570 ML 96 94 6 99 6 1 1 226 499 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 97 94 6 99 6 1 1 225 498 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 98 94 6 99 6 0 0 214 487 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 99 99 5 99 6 1 1 231 503 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 100 100 6 100 5 1 1 231 503 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 14 46 C G - - MP 101 100 6 105 6 2 2 230 503 -9.645 -9.584 -0.015 -8.361 -8.641 -9.036 -4.922 -4.673 -4.710 1.324 -3.505 -5.276 3.405 -4.222 -4.674 -0.654 -5.036 -2.411 0.213 -5.076 -1.133 -3.495 ML 102 100 6 105 6 1 1 221 494 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 103 100 6 105 6 1 1 219 492 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 104 100 6 105 6 0 0 208 481 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 105 105 5 105 6 1 1 228 501 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 106 106 6 106 5 1 1 228 501 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 15 45 C G - - MP 107 106 6 111 4 2 2 229 501 -8.075 -1.612 -0.600 -6.696 -6.869 -6.971 -6.115 -3.166 -4.514 -6.223 3.907 -5.602 -6.367 -3.113 -6.243 -5.086 -1.370 -6.788 -2.409 -5.170 ML 108 106 6 111 4 1 1 208 481 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 109 106 6 111 4 1 1 207 480 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 110 106 6 111 4 0 0 203 475 -4.568 -4.250 -2.265 -0.520 IL 111 111 5 111 4 1 1 226 498 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 112 112 6 112 3 1 1 243 516 -0.097 -3.975 -9.187 0.000 0.000 0.000 0.000 [ MATL 34 ] 16 - u - - - ML 113 112 6 115 3 1 1 15 34 -9.034 -0.010 -7.688 -0.072 -1.297 -0.121 0.784 D 114 112 6 115 3 0 0 16 34 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 17 - a - - - ML 116 115 3 118 3 1 1 14 32 -9.034 -0.010 -7.688 0.690 0.211 -0.629 -0.781 D 117 115 3 118 3 0 0 15 33 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 18 - g - - - ML 119 118 3 121 3 1 1 12 31 -9.034 -0.010 -7.688 -0.893 -0.375 0.872 -0.218 D 120 118 3 121 3 0 0 13 32 -6.174 -1.687 -0.566 IL 121 121 3 121 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 19 - g - - - ML 122 121 3 124 2 1 1 1 1 * 0.000 0.204 -0.551 0.581 -0.579 D 123 121 3 124 2 0 0 0 0 * 0.000 IL 124 124 3 124 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 38 ] - - - - - - E 125 124 3 -1 0 0 0 0 0 [ BEGR 39 ] - - - - - - S 126 81 1 127 3 0 0 36 58 -9.034 -0.010 -7.688 IL 127 127 2 127 3 1 1 39 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 50 - G - - - ML 128 127 2 130 3 1 1 36 58 -9.034 -0.010 -7.688 -3.525 -4.965 1.937 -4.265 D 129 127 2 130 3 0 0 34 56 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 38 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 51 - G - - - ML 131 130 3 133 5 1 1 35 57 -8.064 -0.020 -7.879 -8.091 -8.983 -1.717 -1.002 1.570 -2.139 D 132 130 3 133 5 0 0 33 55 -4.959 -0.803 -4.221 -2.596 -2.508 IL 133 133 3 133 5 1 1 35 57 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 52 72 C G - - MP 134 133 3 138 6 2 2 34 56 -9.645 -9.584 -0.015 -8.361 -8.641 -9.036 -5.308 -5.314 -4.921 -1.381 -3.472 -5.280 3.405 -4.305 -4.944 -1.231 -5.208 -3.250 1.858 -5.310 -1.122 -3.736 ML 135 133 3 138 6 1 1 32 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 3 138 6 1 1 32 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 3 138 6 0 0 29 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 33 55 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 33 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 53 71 G C - - MP 140 139 6 144 6 2 2 32 54 -9.645 -9.584 -0.015 -8.361 -8.641 -9.036 -4.668 -3.227 -4.641 2.151 -5.776 -5.274 -0.956 -5.083 -4.607 3.239 -4.990 -0.792 -1.207 -4.633 -2.957 -3.502 ML 141 139 6 144 6 1 1 30 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 142 139 6 144 6 1 1 30 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 143 139 6 144 6 0 0 28 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 144 144 5 144 6 1 1 31 53 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 31 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 44 ] 54 70 G U - - MP 146 145 6 150 6 2 2 30 52 -9.645 -9.584 -0.015 -8.361 -8.641 -9.036 -4.831 -3.459 -5.047 0.810 -6.950 -7.579 -2.371 -5.076 -4.590 0.813 -5.203 3.548 -2.417 -6.174 -4.251 -3.645 ML 147 145 6 150 6 1 1 28 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 6 1 1 28 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 149 145 6 150 6 0 0 27 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 150 150 5 150 6 1 1 29 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 151 151 6 151 5 1 1 29 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 45 ] 55 69 c g - - MP 152 151 6 156 6 2 2 28 50 -9.645 -9.584 -0.114 -8.361 -8.641 -3.887 -4.628 -4.633 -4.465 -0.837 1.276 -4.999 2.619 -4.046 -4.470 -0.699 -4.842 -2.628 2.366 -4.756 -0.969 -3.328 ML 153 151 6 156 6 1 1 27 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 154 151 6 156 6 1 1 27 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 155 151 6 156 6 0 0 26 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 156 156 5 156 6 1 1 27 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 157 157 6 157 5 1 1 27 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 46 ] 56 68 c g - - MP 158 157 6 162 6 2 2 25 48 -9.547 -9.486 -0.016 -8.263 -8.543 -8.938 -4.035 -3.887 -3.999 -0.052 -3.047 -4.692 2.820 -3.699 -3.974 1.494 -4.427 -1.749 0.853 -4.209 1.214 -2.821 ML 159 157 6 162 6 1 1 26 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 160 157 6 162 6 1 1 26 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 161 157 6 162 6 0 0 26 48 -10.436 -9.134 -4.931 -5.613 -5.631 -0.114 IL 162 162 5 162 6 1 1 26 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 163 163 6 163 5 1 1 26 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 47 ] 57 67 c g - - MP 164 163 6 168 4 2 2 23 46 -7.899 -8.106 -0.027 -6.520 -0.827 -3.126 -3.369 0.445 -2.879 -4.173 2.734 -3.371 -3.387 1.780 -3.898 -1.123 0.948 -3.519 -0.615 -2.338 ML 165 163 6 168 4 1 1 26 48 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 166 163 6 168 4 1 1 25 48 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 167 163 6 168 4 0 0 26 49 -5.896 -0.684 -3.593 -1.847 IL 168 168 5 168 4 1 1 27 50 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 169 169 6 169 3 1 1 27 49 -1.196 -0.899 -5.197 0.000 0.000 0.000 0.000 [ MATL 48 ] 58 - A - - - ML 170 169 6 172 3 1 1 19 38 -9.034 -0.010 -7.688 1.625 -1.057 -2.420 -2.008 D 171 169 6 172 3 0 0 19 37 -6.174 -1.687 -0.566 IL 172 172 3 172 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 59 - u - - - ML 173 172 3 175 3 1 1 18 36 -9.034 -0.010 -7.688 0.051 -0.147 -1.598 0.791 D 174 172 3 175 3 0 0 18 36 -6.174 -1.687 -0.566 IL 175 175 3 175 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 60 - c - - - ML 176 175 3 178 3 1 1 17 35 -9.034 -0.010 -7.688 -0.022 0.783 -1.849 0.025 D 177 175 3 178 3 0 0 17 35 -6.174 -1.687 -0.566 IL 178 178 3 178 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 61 - G - - - ML 179 178 3 181 3 1 1 15 34 -9.034 -0.010 -7.688 -1.837 -1.284 1.635 -2.300 D 180 178 3 181 3 0 0 16 34 -6.174 -1.687 -0.566 IL 181 181 3 181 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 62 - a - - - ML 182 181 3 184 3 1 1 14 32 -9.034 -0.010 -7.688 0.525 -0.376 -0.963 0.353 D 183 181 3 184 3 0 0 14 33 -6.174 -1.687 -0.566 IL 184 184 3 184 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 63 - g - - - ML 185 184 3 187 3 1 1 12 31 -9.034 -0.320 -2.343 0.114 -0.022 0.231 -0.398 D 186 184 3 187 3 0 0 13 32 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 64 - G - - - ML 188 187 3 190 2 1 1 1 1 * 0.000 -1.324 -0.928 1.466 -1.679 D 189 187 3 190 2 0 0 0 0 * 0.000 IL 190 190 3 190 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 55 ] - - - - - - E 191 190 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME Actino-ugpB ACC RF02927 DESC Actino-ugpB RNA LENG 61 MAXL 368 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Mon Oct 1 22:24:41 2018 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 12 EFFN 9.682617 CKSUM 2770856126 STATS LOCAL MSV -7.6746 0.71906 STATS LOCAL VITERBI -8.6430 0.71906 STATS LOCAL FORWARD -3.5953 0.71906 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.46724 1.42305 1.03646 1.75011 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 0.00000 * 1 4.31818 5.37917 0.02630 4.82619 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 2 4.34653 4.08311 4.90294 0.03794 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 3 4.72069 0.03233 5.10429 4.08414 3 C - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 4 3.02242 2.03828 0.24038 3.35990 4 G - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 5 0.02483 5.01818 4.62979 4.80972 5 A - - : 1.38629 1.38629 1.38629 1.38629 0.07099 4.89742 2.79579 1.46634 0.26236 1.09861 0.40547 6 0.94217 2.45720 1.64521 1.10390 6 a - - : 1.38629 1.38629 1.38629 1.38629 0.01590 4.84233 4.84233 1.46634 0.26236 0.21875 1.62722 7 0.55511 1.65469 1.88935 2.48086 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 8 0.20996 3.90340 1.92648 3.74857 8 A - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 9 4.31818 5.37917 0.02630 4.82619 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 10 2.01066 4.07948 0.19181 3.74142 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 11 0.64537 3.94178 0.84024 3.70867 11 A - - < 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 12 5.14840 0.03324 5.11107 3.86994 12 C - - < 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 13 0.24969 4.43541 1.64651 4.11122 13 A - - < 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 14 1.77428 0.30818 3.50667 2.72392 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 15 5.10084 0.03396 5.08001 3.85947 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 16 1.48336 2.51062 1.43426 0.79050 16 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 17 0.85936 1.16617 1.85747 2.21696 17 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 18 2.30207 1.63084 0.68158 1.61763 18 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 19 1.25847 1.76919 0.90811 1.95084 19 g - - _ 1.38629 1.38629 1.38629 1.38629 0.44045 1.05330 4.89742 3.03419 0.04931 1.09861 0.40547 20 4.10813 5.21790 0.02938 4.94891 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 21 3.00033 3.71832 0.28930 1.73066 46 G - - > 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 22 4.27210 1.76956 4.19332 0.22246 47 U - - > 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 23 4.10646 5.21483 0.02944 4.94564 48 G - - > 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 24 3.89767 0.89692 3.71293 0.60243 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 25 4.31818 5.37917 0.02630 4.82619 50 G - - - 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 26 3.02242 2.03828 0.24038 3.35990 51 G - - - 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 27 4.06864 0.33852 3.88852 1.38789 52 C - - < 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 28 1.16460 3.74960 0.45223 3.56772 53 G - - < 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 29 2.31720 4.63652 0.13079 4.24336 54 G - - < 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 30 3.77324 0.54589 3.58172 0.99460 55 C - - < 1.38629 1.38629 1.38629 1.38629 0.14571 4.89742 2.05477 1.46634 0.26236 1.09861 0.40547 31 3.06631 0.69623 1.61618 1.36145 56 c - - < 1.38629 1.38629 1.38629 1.38629 0.01713 4.76884 4.76884 1.46634 0.26236 2.95289 0.05360 32 2.17711 0.68329 1.38231 2.03500 57 C - - < 1.38629 1.38629 1.38629 1.38629 0.01713 4.76884 4.76884 1.46634 0.26236 0.11024 2.25974 33 0.21144 2.11628 3.49014 3.22882 58 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 34 1.35996 1.47840 2.73449 0.79762 59 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 35 1.42610 0.75722 2.99578 1.42383 60 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 36 3.10705 2.24909 0.20034 3.46362 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 37 0.99087 1.66212 2.13930 1.13547 62 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 38 1.33398 1.34645 1.16972 1.79604 63 g - - _ 1.38629 1.38629 1.38629 1.38629 0.25459 4.89742 1.52647 1.46634 0.26236 1.09861 0.40547 39 2.71491 2.01614 0.28530 3.01939 64 G - - _ 1.38629 1.38629 1.38629 1.38629 0.18825 1.81925 4.66190 0.11272 2.23864 0.06646 2.74426 40 1.92995 1.44856 0.63628 2.40045 67 G - - > 1.38629 1.38629 1.38629 1.38629 0.14571 4.89742 2.05477 1.46634 0.26236 1.09861 0.40547 41 2.40950 1.66636 0.41266 2.82485 68 G - - > 1.38629 1.38629 1.38629 1.38629 0.01713 4.76884 4.76884 1.46634 0.26236 0.11024 2.25974 42 0.63640 3.74349 0.87247 3.53306 69 A - - > 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 43 4.40448 2.32534 4.38851 0.13055 70 U - - > 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 44 3.80227 0.48669 3.55530 1.09526 71 C - - > 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 45 1.45706 4.04018 0.31840 3.80889 72 G - - > 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 46 1.39347 1.02125 2.82462 1.10168 73 c - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 47 4.72069 0.03233 5.10429 4.08414 74 C - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 48 4.31818 5.37917 0.02630 4.82619 75 G - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 49 4.31818 5.37917 0.02630 4.82619 76 G - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 50 4.72069 0.03233 5.10429 4.08414 77 C - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 51 0.26375 3.26344 3.37118 1.83739 78 A - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 52 2.44693 1.53523 2.02121 0.56997 79 U - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 53 0.85619 0.77093 3.30826 2.57626 80 c - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 54 1.17867 2.64690 0.57155 2.86831 81 G - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 55 1.77881 3.95592 0.24146 3.62925 82 G - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 56 0.86269 1.25056 1.70286 2.21214 83 a - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 57 1.54343 3.85480 0.30640 3.53759 84 G - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 58 0.94573 1.69302 1.55951 1.52601 85 a - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 59 0.60207 1.57119 2.82939 1.68484 86 A - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 60 0.25434 1.90767 3.42690 3.13136 87 A - - : 1.38629 1.38629 1.38629 1.38629 0.01504 4.89742 4.89742 1.46634 0.26236 1.09861 0.40547 61 3.24727 3.94611 0.18470 2.20335 88 G - - : 1.38629 1.38629 1.38629 1.38629 0.00755 4.88992 * 1.46634 0.26236 0.00000 * //