INFERNAL1/a [1.1.4 | Dec 2020] NAME DUF3800-VI ACC RF02915 DESC DUF3800-VI RNA STATES 165 NODES 38 CLEN 52 W 72 ALPH RNA RF no CONS yes MAP yes DATE Wed Jan 16 14:59:39 2019 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 87 EFFN 33.360443 CKSUM 907066647 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.50 EFP7GF -16.7659 0.72432 ECMLC 0.63387 -5.19335 3.66583 1600000 329591 0.003641 ECMGC 0.38639 -19.81656 -5.69211 1600000 93805 0.004264 ECMLI 0.61042 -4.99422 4.11191 1600000 311329 0.003854 ECMGI 0.41537 -15.98528 -3.26606 1600000 78802 0.005076 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 72 92 -11.247 -11.186 -0.283 -9.963 -2.508 -10.638 IL 1 1 2 1 6 1 17 74 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 18 73 93 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 67 c g - - MP 3 2 3 7 6 3 23 72 92 -10.970 -10.909 -0.006 -9.685 -9.965 -10.360 -1.389 -1.481 -2.965 -0.028 -2.908 -3.817 2.722 -1.787 -0.699 1.113 -3.598 -1.607 0.667 -3.107 -0.270 0.418 ML 4 2 3 7 6 1 16 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 19 71 90 -10.296 -9.025 -0.361 -9.003 -2.253 -7.216 -0.343 0.354 -0.114 0.013 D 6 2 3 7 6 0 12 68 88 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 17 72 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 17 71 91 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 66 G U - - MP 9 8 6 13 6 3 23 70 90 -11.203 -11.143 -0.005 -9.919 -10.199 -10.594 -6.834 -5.501 -6.951 1.479 -8.618 -9.052 0.998 -7.096 -6.665 1.399 -7.267 3.072 -4.064 -7.779 -5.870 -5.622 ML 10 8 6 13 6 1 16 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 17 69 88 -8.318 -7.047 -0.452 -7.025 -2.159 -5.239 0.421 -0.699 -0.911 0.597 D 12 8 6 13 6 0 12 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 17 70 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 17 69 89 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 65 G C - - MP 15 14 6 19 6 3 22 68 88 -11.247 -11.186 -0.005 -9.963 -10.243 -10.638 -8.548 -5.777 -9.479 0.685 -10.308 -7.154 -4.935 -9.452 -7.110 3.827 -7.372 -3.591 -5.223 -7.504 -7.230 -8.224 ML 16 14 6 19 6 1 15 66 86 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 15 66 86 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 11 64 84 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 16 68 87 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 17 67 87 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 64 U G - - MP 21 20 6 25 6 2 20 66 86 -3.420 -11.186 -0.146 -9.963 -10.243 -10.638 -7.399 -7.386 -6.997 -3.405 -5.521 -7.351 1.555 -6.357 -7.014 0.590 -3.087 -5.279 -0.448 -7.389 3.357 -1.915 ML 22 20 6 25 6 1 15 64 84 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 15 64 84 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 11 61 81 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 18 65 85 -4.908 -0.271 -3.089 -6.826 -7.602 -7.263 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 18 65 84 -4.191 -0.127 -7.703 -5.870 -6.976 0.000 0.000 0.000 0.000 [ MATP 5 ] 6 62 U G - - MP 27 26 6 31 6 2 19 63 83 -11.247 -11.186 -0.005 -9.963 -10.243 -10.638 -8.064 -8.327 -7.395 -4.546 -5.753 -7.549 2.438 -6.665 -7.495 -4.507 -7.621 -6.687 -0.010 -7.906 3.209 -2.458 ML 28 26 6 31 6 1 15 62 82 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 14 62 82 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 11 60 79 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 16 63 83 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 16 63 83 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 7 61 G C - - MP 33 32 6 37 6 2 17 61 81 -11.247 -11.186 -0.005 -9.963 -10.243 -10.638 -6.950 -5.325 -7.033 1.727 -8.465 -7.474 -3.561 -7.375 -6.660 3.425 -7.076 0.739 -3.757 -7.007 -5.571 -5.824 ML 34 32 6 37 6 1 14 60 80 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 14 60 80 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 11 58 78 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 15 61 81 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 15 61 81 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 8 60 g c - - MP 39 38 6 43 6 2 15 59 79 -11.247 -11.186 -0.005 -9.963 -10.243 -10.638 -5.761 -4.341 -5.616 2.502 -6.771 -2.473 -1.836 -6.263 -5.910 2.965 -6.181 0.640 -2.096 -5.462 -3.846 -4.562 ML 40 38 6 43 6 1 13 59 79 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 6 1 13 59 78 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 10 57 77 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 14 59 79 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 14 59 79 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 9 59 G C - - MP 45 44 6 49 4 2 13 57 77 -10.259 -10.466 -0.005 -8.880 -8.948 -5.809 -10.515 -1.187 -10.648 -7.046 -5.075 -10.262 -7.162 3.943 -7.380 -3.697 -5.413 -7.480 -7.471 -9.343 ML 46 44 6 49 4 1 12 58 78 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 4 1 11 57 78 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 48 44 6 49 4 0 10 56 77 -4.568 -4.250 -2.265 -0.520 IL 49 49 5 49 4 1 12 59 79 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 50 50 6 50 3 1 12 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 10 - A - - - ML 51 50 6 53 2 1 11 55 75 -11.810 -0.000 1.991 -7.294 -6.610 -6.769 D 52 50 6 53 2 0 10 54 74 -8.445 -0.004 IL 53 53 3 53 2 1 11 56 76 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 10 ] - - - - - - B 54 53 3 55 114 0 10 54 74 [ BEGL 11 ] - - - - - - S 55 54 1 56 4 0 0 33 50 -0.008 -9.295 -8.702 -9.342 [ MATP 12 ] 11 34 G C - - MP 56 55 1 60 6 2 2 33 50 -11.247 -11.186 -0.005 -9.963 -10.243 -10.638 -8.960 -2.726 -10.549 -1.467 -10.652 -7.032 -5.064 -10.315 -7.161 3.937 -7.376 -3.698 -5.401 -7.465 -7.462 -9.404 ML 57 55 1 60 6 1 1 32 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 58 55 1 60 6 1 1 32 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 59 55 1 60 6 0 0 29 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 60 60 5 60 6 1 1 33 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 61 61 6 61 5 1 1 33 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 12 33 g c - - MP 62 61 6 66 6 2 2 31 48 -11.247 -11.186 -0.005 -9.963 -10.243 -10.638 -5.323 -2.454 -5.156 1.378 -6.178 -5.761 -0.146 -5.814 -5.573 2.630 -5.835 1.736 -0.007 -5.021 0.649 -4.124 ML 63 61 6 66 6 1 1 30 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 6 66 6 1 1 30 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 6 66 6 0 0 27 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 31 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 31 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 13 32 G U - - MP 68 67 6 72 6 2 2 29 46 -11.247 -11.186 -0.005 -9.963 -10.243 -10.638 -7.020 -5.701 -7.165 -0.475 -8.679 -9.651 -1.348 -7.217 -6.800 1.152 -7.430 3.514 0.195 -8.225 -6.045 -5.799 ML 69 67 6 72 6 1 1 28 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 28 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 25 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 29 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 29 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 14 31 C G - - MP 74 73 6 78 6 2 2 27 44 -11.247 -11.186 -0.026 -9.963 -10.243 -6.064 -8.087 -8.364 -7.408 -4.596 -5.760 -7.554 3.865 -6.675 -7.511 -4.566 -7.632 -6.756 -0.888 -7.923 -0.469 -6.312 ML 75 73 6 78 6 1 1 26 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 26 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 23 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 27 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 27 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 15 30 u g - - MP 80 79 6 84 6 2 2 25 42 -11.226 -11.165 -0.107 -9.942 -6.620 -4.077 -4.681 -4.668 -1.810 -1.020 -4.163 -5.623 2.044 -4.708 -4.763 -0.028 -3.077 -0.663 0.260 -1.498 2.909 -3.717 ML 81 79 6 84 6 1 1 24 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 24 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 21 38 -10.097 -8.796 -4.593 -5.275 -5.292 -0.146 IL 84 84 5 84 6 1 1 25 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 25 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 16 29 G C - - MP 86 85 6 90 6 2 2 23 40 -11.125 -11.064 -0.290 -9.840 -10.120 -2.480 -5.269 -3.908 -5.090 1.030 -6.219 -5.690 -1.287 -2.737 -5.522 3.380 -5.771 0.763 -0.742 -4.948 -1.300 -4.053 ML 87 85 6 90 6 1 1 22 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 22 39 -7.542 -6.271 -2.179 -6.249 -0.510 -4.462 -0.195 0.658 -0.909 0.023 D 89 85 6 90 6 0 0 20 37 -11.722 -10.420 -6.217 -6.900 -6.917 -0.046 IL 90 90 5 90 6 1 1 23 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 23 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 17 28 C G - - MP 92 91 6 96 4 2 2 21 38 -3.391 -1.823 -0.692 -8.396 -7.540 -7.779 -6.891 -3.975 -5.258 -7.057 3.743 -6.166 -6.984 -3.923 -7.120 -6.086 0.963 -7.393 -1.287 -5.782 ML 93 91 6 96 4 1 1 20 37 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 20 37 -5.432 -1.337 -2.328 -1.389 -0.089 -1.001 0.862 -0.429 D 95 91 6 96 4 0 0 19 37 -8.695 -0.485 -2.041 -4.647 IL 96 96 5 96 4 1 1 21 38 -3.658 -0.332 -3.090 -6.827 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 20 37 -1.621 -0.575 -8.175 0.000 0.000 0.000 0.000 [ MATL 19 ] 19 - c - - - ML 98 97 6 100 3 1 1 15 34 -11.180 -0.002 -9.834 0.231 0.827 -1.116 -0.761 D 99 97 6 100 3 0 0 16 35 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 20 - u - - - ML 101 100 3 103 3 1 1 14 32 -11.180 -0.002 -9.834 0.028 -0.769 -0.829 0.873 D 102 100 3 103 3 0 0 15 34 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 21 - U - - - ML 104 103 3 106 3 1 1 12 31 -11.180 -0.010 -7.309 -0.131 -1.086 -1.432 1.167 D 105 103 3 106 3 0 0 14 33 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 22 - U - - - ML 107 106 3 109 3 1 1 11 29 -11.172 -0.533 -1.697 -0.083 -0.616 -1.521 1.039 D 108 106 3 109 3 0 0 13 31 -6.708 -2.221 -0.366 IL 109 109 3 109 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 23 - a - - - ML 110 109 3 112 2 1 1 1 1 * 0.000 0.456 -1.006 -0.364 0.436 D 111 109 3 112 2 0 0 0 0 * 0.000 IL 112 112 3 112 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 24 ] - - - - - - E 113 112 3 -1 0 0 0 0 0 [ BEGR 25 ] - - - - - - S 114 54 1 115 3 0 0 34 54 -11.180 -0.002 -9.834 IL 115 115 2 115 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 35 - G - - - ML 116 115 2 118 3 1 1 34 54 -11.180 -0.002 -9.834 -3.022 -7.138 1.948 -6.302 D 117 115 2 118 3 0 0 33 52 -6.174 -1.687 -0.566 IL 118 118 3 118 3 1 1 36 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 36 - U - - - ML 119 118 3 121 5 1 1 33 53 -10.135 -0.005 -9.950 -10.162 -11.054 -3.541 0.812 -3.035 1.026 D 120 118 3 121 5 0 0 32 51 -4.959 -0.803 -4.221 -2.596 -2.508 IL 121 121 3 121 5 1 1 33 53 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 37 58 u a - - MP 122 121 3 126 6 2 2 32 52 -11.247 -11.186 -0.005 -9.963 -10.243 -10.638 -2.162 -4.973 -5.174 -0.691 -1.419 -6.019 2.013 -4.917 -5.098 0.023 -5.629 -2.781 2.989 -5.344 0.202 -1.672 ML 123 121 3 126 6 1 1 30 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 124 121 3 126 6 1 1 30 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 125 121 3 126 6 0 0 28 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 126 126 5 126 6 1 1 32 51 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 127 127 6 127 5 1 1 31 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 38 57 G C - - MP 128 127 6 132 6 2 2 30 50 -11.247 -11.186 -0.005 -9.963 -10.243 -10.638 -3.118 -4.402 -5.668 1.545 -6.839 -6.268 -1.916 -6.289 -5.951 3.526 -6.242 -2.014 -0.562 -5.557 -3.923 -4.601 ML 129 127 6 132 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 130 127 6 132 6 1 1 28 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 131 127 6 132 6 0 0 26 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 132 132 5 132 6 1 1 30 49 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 133 133 6 133 5 1 1 29 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 39 56 G C - - MP 134 133 6 138 6 2 2 28 48 -11.247 -11.186 -0.073 -6.891 -5.000 -6.873 -5.413 -4.048 -5.236 1.784 -6.369 -5.835 -0.811 -5.918 -5.658 3.243 -5.910 0.316 -0.148 -5.095 -3.445 -4.197 ML 135 133 6 138 6 1 1 27 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 136 133 6 138 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 137 133 6 138 6 0 0 24 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 138 138 5 138 6 1 1 28 47 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 139 139 6 139 5 1 1 27 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 40 55 G C - - MP 140 139 6 144 6 2 2 26 46 -11.179 -11.119 -0.264 -9.895 -10.175 -2.604 -5.448 -4.085 -2.620 1.859 -6.435 -5.915 -0.559 -5.943 -5.675 3.395 -5.944 -1.369 -1.769 -5.166 -3.513 -4.233 ML 141 139 6 144 6 1 1 25 44 -6.771 -7.117 -0.776 -1.526 -6.967 -4.496 1.010 -0.876 -0.620 -0.338 MR 142 139 6 144 6 1 1 25 45 -8.337 -7.066 -0.445 -7.044 -2.178 -5.258 -0.971 -1.063 -1.672 1.432 D 143 139 6 144 6 0 0 22 41 -9.717 -8.416 -4.213 -4.895 -4.912 -0.192 IL 144 144 5 144 6 1 1 26 45 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 145 145 6 145 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 41 54 g c - - MP 146 145 6 150 4 2 2 24 44 -1.284 -1.806 -1.733 -8.575 -4.905 -3.920 -4.827 1.571 -5.098 -5.503 1.831 -5.201 -5.089 2.729 -1.779 -0.876 0.463 -4.777 -1.866 -3.771 ML 147 145 6 150 4 1 1 21 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 148 145 6 150 4 1 1 21 40 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 149 145 6 150 4 0 0 20 40 -8.206 -1.768 -0.628 -4.158 IL 150 150 5 150 4 1 1 23 43 -2.695 -0.290 -5.274 -9.011 0.000 0.000 0.000 0.000 IR 151 151 6 151 3 1 1 22 41 -1.357 -0.720 -8.658 0.000 0.000 0.000 0.000 [ MATL 33 ] 44 - u - - - ML 152 151 6 154 3 1 1 14 32 -11.180 -0.002 -9.834 -0.446 -0.513 -0.026 0.663 D 153 151 6 154 3 0 0 16 34 -6.174 -1.687 -0.566 IL 154 154 3 154 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 45 - u - - - ML 155 154 3 157 3 1 1 12 31 -11.180 -0.002 -9.834 0.095 -0.690 -1.124 0.890 D 156 154 3 157 3 0 0 14 33 -6.174 -1.687 -0.566 IL 157 157 3 157 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 46 - u - - - ML 158 157 3 160 3 1 1 11 29 -11.180 -0.081 -4.211 0.572 -1.122 -1.787 0.819 D 159 157 3 160 3 0 0 13 32 -6.174 -1.687 -0.566 IL 160 160 3 160 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 47 - a - - - ML 161 160 3 163 2 1 1 1 1 * 0.000 0.712 -1.363 -0.179 0.124 D 162 160 3 163 2 0 0 0 0 * 0.000 IL 163 163 3 163 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 37 ] - - - - - - E 164 163 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME DUF3800-VI ACC RF02915 DESC DUF3800-VI RNA LENG 52 MAXL 106 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Wed Jan 16 14:59:39 2019 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 87 EFFN 64.944672 CKSUM 907066647 STATS LOCAL MSV -7.7722 0.72432 STATS LOCAL VITERBI -8.4398 0.72432 STATS LOCAL FORWARD -3.5351 0.72432 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.92302 1.32101 1.04607 1.44538 1.38629 1.38629 1.38629 1.38629 0.23594 6.79347 1.56518 1.46634 0.26236 0.00000 * 1 2.50298 0.68566 1.65679 1.49766 1 C - - ( 1.38629 1.38629 1.38629 1.38629 0.00283 6.56036 6.56036 1.46634 0.26236 0.19600 1.72604 2 1.75981 2.06336 0.35952 5.84875 2 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00233 6.75746 6.75746 1.46634 0.26236 0.05964 2.84914 3 2.24612 6.41860 0.11558 6.36944 3 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 4 5.84772 1.73768 2.28417 0.32944 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.11971 2.19191 6.79347 0.01995 3.92434 1.09861 0.40547 5 5.98314 1.08854 5.97546 0.41820 6 U - - ( 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 6 1.55058 6.04273 0.24531 5.79736 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 7 0.96080 3.94589 0.52875 4.74024 8 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 8 3.59157 6.39160 0.03143 6.37040 9 G - - ( 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 9 0.00351 7.08538 6.57426 6.66486 10 A - - , 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 10 3.46991 6.49762 0.03469 6.52149 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 11 1.75720 2.95175 0.50434 1.76420 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 12 3.22910 3.74513 0.14646 2.61706 13 G - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 13 6.13063 0.08096 6.07483 2.61328 14 C - - < 1.38629 1.38629 1.38629 1.38629 0.01946 6.79347 4.00925 1.46634 0.26236 1.09861 0.40547 14 3.39080 1.35429 2.35962 0.48820 15 U - - < 1.38629 1.38629 1.38629 1.38629 0.08694 6.77629 2.49947 1.46634 0.26236 2.90072 0.05655 15 2.09115 3.62255 0.23686 2.80285 16 G - - < 1.38629 1.38629 1.38629 1.38629 0.24641 6.69184 1.52712 1.46634 0.26236 4.49086 0.01127 16 5.70100 0.16055 5.66640 1.95528 17 C - - < 1.38629 1.38629 1.38629 1.38629 0.10568 2.31564 6.44860 0.03177 3.46514 0.00763 4.87971 17 1.22185 0.76713 2.20183 2.03739 19 c - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 18 1.38749 1.95617 1.99575 0.74868 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 19 1.49878 2.20368 2.47023 0.54191 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.00764 6.79347 5.03771 1.46634 0.26236 1.09861 0.40547 20 1.46544 1.83622 2.55453 0.63135 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.32150 6.78808 1.29532 1.46634 0.26236 2.05256 0.13743 21 1.05435 2.17347 1.63341 1.07137 23 a - - _ 1.38629 1.38629 1.38629 1.38629 0.84745 0.62776 3.27795 0.22141 1.61638 0.17486 1.82991 22 2.11933 5.58849 0.13819 5.25721 28 G - - > 1.38629 1.38629 1.38629 1.38629 0.07742 6.72216 2.61327 1.46634 0.26236 0.34015 1.24362 23 3.34994 0.38536 3.14025 1.42116 29 C - - > 1.38629 1.38629 1.38629 1.38629 0.00246 6.70387 6.70387 1.46634 0.26236 0.24378 1.53091 24 2.90223 2.61979 0.20142 2.90562 30 G - - > 1.38629 1.38629 1.38629 1.38629 0.00228 6.77629 6.77629 1.46634 0.26236 0.11650 2.20757 25 3.49565 6.19817 0.03572 5.90334 31 G - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 26 2.62251 1.99912 3.72160 0.26432 32 U - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 27 2.78335 0.94712 1.82828 0.94258 33 u - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 28 6.46109 0.02777 6.35731 3.72583 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 29 3.48518 7.10200 0.03359 6.45985 35 G - - , 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 30 4.48264 0.80956 3.60595 0.66072 36 U - - , 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 31 3.15105 1.30109 2.82935 0.46856 37 U - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 32 1.65329 4.95367 0.27357 3.19749 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 33 1.49689 3.52114 0.37628 2.81014 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.04897 6.79347 3.06458 1.46634 0.26236 1.09861 0.40547 34 1.38672 3.29407 0.36163 4.10643 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.21944 6.74684 1.63037 1.46634 0.26236 0.27160 1.43616 35 1.63865 1.44066 0.75226 2.32599 41 g - - < 1.38629 1.38629 1.38629 1.38629 0.55066 0.86266 6.57630 0.16218 1.89904 0.01136 4.48370 36 1.77214 1.75439 1.37780 0.90415 44 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 37 1.33347 1.89451 2.23342 0.73630 45 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 38 0.97006 2.24041 2.80350 0.78982 46 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 39 0.86590 2.44928 1.49378 1.31509 47 a - - _ 1.38629 1.38629 1.38629 1.38629 1.15566 0.59740 2.00313 0.52731 0.89206 1.09861 0.40547 40 2.47192 0.85516 1.31275 1.50831 54 c - - > 1.38629 1.38629 1.38629 1.38629 0.01286 6.64984 4.46699 1.46634 0.26236 0.08864 2.46716 41 4.30969 0.40549 3.02039 1.30516 55 C - - > 1.38629 1.38629 1.38629 1.38629 0.00229 6.77508 6.77508 1.46634 0.26236 0.10970 2.26432 42 2.88458 0.49241 3.41701 1.20344 56 C - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 43 3.08098 0.28070 4.76054 1.65929 57 C - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 44 0.55567 2.90453 1.14112 2.95508 58 A - - > 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 45 6.31077 0.03387 6.26252 3.52075 59 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 46 4.95031 0.68926 4.70394 0.73000 60 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 47 5.80049 0.39162 5.77888 1.14594 61 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 48 2.81474 5.95861 0.07991 4.24765 62 G - - ) 1.38629 1.38629 1.38629 1.38629 0.11971 2.19191 6.79347 0.01995 3.92434 1.09861 0.40547 49 3.23023 2.36020 0.16759 3.89483 64 G - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 50 5.77040 0.12167 5.87970 2.21970 65 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 51 4.20434 1.84466 2.06428 0.35656 66 U - - ) 1.38629 1.38629 1.38629 1.38629 0.00224 6.79347 6.79347 1.46634 0.26236 1.09861 0.40547 52 1.88054 1.61680 0.74227 1.75488 67 g - - ) 1.38629 1.38629 1.38629 1.38629 0.00112 6.79234 * 1.46634 0.26236 0.00000 * //