INFERNAL1/a [1.1.4 | Dec 2020] NAME SpF59_sRNA ACC RF02440 DESC Streptococcus sRNA SpF59 (ldcC RNA) STATES 175 NODES 47 CLEN 57 W 169 ALPH RNA RF no CONS yes MAP yes DATE Thu Jan 3 14:52:51 2019 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmcalibrate --cpu 8 CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 410 EFFN 12.659225 CKSUM 1930186072 NULL 0.000 0.000 0.000 0.000 GA 37.20 TC 37.20 NC 36.80 EFP7GF -18.6837 0.71908 ECMLC 0.52415 -10.87231 1.38749 1600000 741206 0.001619 ECMGC 0.37738 -21.08946 -6.17734 1600000 111184 0.003598 ECMLI 0.53524 -9.06415 2.29195 1600000 523518 0.002292 ECMGI 0.39071 -16.67018 -2.97406 1600000 84340 0.004743 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 169 294 -8.790 -10.035 -0.021 -6.489 IL 1 1 2 1 4 1 14 170 296 -2.817 -4.319 -0.613 -2.698 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 16 171 296 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 1 ] - 104 - A - - MR 3 2 3 5 3 1 18 169 295 -10.220 -0.005 -8.538 1.503 -2.055 -0.465 -2.315 D 4 2 3 5 3 0 10 167 292 -6.390 -1.568 -0.620 IR 5 5 3 5 3 1 15 170 295 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 103 - G - - MR 6 5 3 8 3 1 17 168 294 -10.220 -0.005 -8.538 -4.251 -4.675 1.954 -4.936 D 7 5 3 8 3 0 9 166 291 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 14 169 294 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 102 - C - - MR 9 8 3 11 3 1 16 167 293 -10.220 -0.005 -8.538 -4.975 1.952 -5.468 -3.721 D 10 8 3 11 3 0 9 165 290 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 14 168 293 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 101 - C - - MR 12 11 3 14 3 1 16 166 292 -10.220 -0.005 -8.538 -4.123 1.945 -5.092 -3.965 D 13 11 3 14 3 0 8 164 289 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 13 167 292 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 100 - G - - MR 15 14 3 17 3 1 15 165 291 -10.220 -0.005 -8.538 -4.405 -5.872 1.959 -4.349 D 16 14 3 17 3 0 7 163 288 -6.390 -1.568 -0.620 IR 17 17 3 17 3 1 12 166 291 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 6 ] - 99 - U - - MR 18 17 3 20 3 1 14 164 290 -10.220 -0.005 -8.538 -1.382 -1.737 -3.052 1.676 D 19 17 3 20 3 0 6 162 287 -6.390 -1.568 -0.620 IR 20 20 3 20 3 1 11 165 290 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 7 ] - 98 - a - - MR 21 20 3 23 3 1 14 163 289 -10.220 -0.005 -8.538 0.845 0.154 -1.888 -0.285 D 22 20 3 23 3 0 6 161 286 -6.390 -1.568 -0.620 IR 23 23 3 23 3 1 10 164 289 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 8 ] - 97 - A - - MR 24 23 3 26 5 1 13 162 288 -5.562 -0.039 -8.703 -8.916 -9.807 1.446 -2.532 -0.140 -2.364 D 25 23 3 26 5 0 5 160 286 -5.352 -0.707 -2.978 -4.409 -2.404 IR 26 26 3 26 5 1 9 162 288 -2.654 -0.406 -6.165 -4.333 -5.439 0.000 0.000 0.000 0.000 [ MATP 9 ] 1 95 u a - - MP 27 26 3 31 6 2 14 161 287 -10.220 -10.160 -0.010 -8.936 -9.216 -9.611 -1.871 -2.331 -0.627 0.652 -1.410 -3.170 1.249 -2.657 -1.843 1.312 -2.616 -1.004 2.299 -2.398 0.475 -1.469 ML 28 26 3 31 6 1 7 159 284 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 3 31 6 1 7 159 284 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 3 31 6 0 4 154 280 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 8 160 286 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 8 160 286 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 10 ] 2 94 G C - - MP 33 32 6 37 6 2 13 159 285 -10.220 -10.160 -0.011 -8.504 -9.216 -9.611 -7.460 -4.697 -8.302 -0.699 -9.041 -6.038 -3.704 -8.398 -6.051 3.899 -6.296 -2.325 -4.006 -6.356 -5.975 -7.122 ML 34 32 6 37 6 1 7 157 283 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 6 157 282 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 3 153 278 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 8 158 284 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 8 158 284 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 11 ] 3 93 A U - - MP 39 38 6 43 6 2 12 157 283 -10.219 -10.159 -0.010 -8.935 -9.215 -9.610 -5.730 -3.439 -4.364 3.676 -5.697 -7.180 0.752 -5.597 -5.512 -1.020 -6.045 -2.065 -1.308 -6.501 -3.296 -4.459 ML 40 38 6 43 6 1 6 155 281 -6.279 -6.625 -1.268 -1.034 -6.475 -4.005 0.462 -0.451 -0.188 0.018 MR 41 38 6 43 6 1 6 155 281 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 42 38 6 43 6 0 3 152 277 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 43 43 5 43 6 1 7 157 282 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 44 44 6 44 5 1 8 156 282 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 12 ] 4 92 C G - - MP 45 44 6 49 6 2 10 155 281 -10.220 -10.160 -0.011 -8.936 -8.592 -9.611 -6.821 -7.053 -6.158 -3.247 -4.526 -6.314 3.840 -5.455 -6.270 -3.193 -6.374 -5.348 -0.388 -6.678 -0.980 -5.068 ML 46 44 6 49 6 1 6 154 279 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 47 44 6 49 6 1 6 154 279 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 48 44 6 49 6 0 3 151 276 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 49 49 5 49 6 1 7 155 280 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 50 50 6 50 5 1 7 154 280 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 5 91 C G - - MP 51 50 6 55 4 2 8 153 279 -5.948 -6.030 -0.081 -5.422 -7.193 -7.438 -6.434 -3.655 -4.788 -6.532 3.899 -5.815 -6.638 -3.610 -6.594 -5.770 -1.063 -7.047 -1.794 -5.437 ML 52 50 6 55 4 1 4 152 277 -2.408 -4.532 -1.293 -1.473 0.368 -0.385 -0.191 0.094 MR 53 50 6 55 4 1 5 152 278 -4.173 -12.600 -0.369 -2.556 0.392 -0.494 0.010 -0.044 D 54 50 6 55 4 0 3 150 275 -12.737 -14.007 -2.036 -0.404 IL 55 55 5 55 4 1 5 152 278 -3.062 -4.565 -0.498 -2.943 0.000 0.000 0.000 0.000 IR 56 56 6 56 3 1 6 153 278 -2.149 -0.460 -4.388 0.000 0.000 0.000 0.000 [ MATR 14 ] - 89 - G - - MR 57 56 6 59 3 1 8 151 277 -5.152 -0.046 -8.143 -0.898 -2.592 1.661 -2.882 D 58 56 6 59 3 0 2 149 275 -6.837 -0.960 -1.067 IR 59 59 3 59 3 1 6 152 277 -2.327 -0.399 -4.565 0.000 0.000 0.000 0.000 [ MATR 15 ] - 87 - C - - MR 60 59 3 62 3 1 7 150 276 -10.219 -0.005 -8.537 -3.996 1.808 -4.790 -1.327 D 61 59 3 62 3 0 1 148 273 -6.425 -1.502 -0.655 IR 62 62 3 62 3 1 5 151 276 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 86 - C - - MR 63 62 3 65 3 1 7 149 275 -10.220 -0.005 -8.538 -3.433 1.611 -0.494 -2.816 D 64 62 3 65 3 0 1 147 272 -6.390 -1.568 -0.620 IR 65 65 3 65 3 1 5 150 275 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 85 - G - - MR 66 65 3 68 3 1 6 148 274 -10.220 -0.005 -8.538 -4.438 -5.924 1.961 -4.486 D 67 65 3 68 3 0 0 146 271 -6.390 -1.568 -0.620 IR 68 68 3 68 3 1 4 149 274 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 84 - A - - MR 69 68 3 71 3 1 6 147 273 -10.220 -0.005 -8.538 1.772 -2.932 -1.688 -2.810 D 70 68 3 71 3 0 0 145 270 -6.390 -1.568 -0.620 IR 71 71 3 71 3 1 4 148 273 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 83 - C - - MR 72 71 3 74 3 1 5 146 272 -6.372 -0.021 -8.538 -3.237 1.890 -3.870 -3.058 D 73 71 3 74 3 0 0 144 269 -6.390 -1.568 -0.620 IR 74 74 3 74 3 1 3 147 272 -2.106 -0.477 -4.345 0.000 0.000 0.000 0.000 [ MATR 20 ] - 81 - A - - MR 75 74 3 77 3 1 4 145 271 -10.220 -0.005 -8.538 1.886 -3.905 -3.520 -2.737 D 76 74 3 77 3 0 0 143 268 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 3 146 271 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 80 - G - - MR 78 77 3 80 3 1 4 144 270 -10.220 -0.011 -7.279 -4.608 -6.198 1.971 -5.343 D 79 77 3 80 3 0 0 142 267 -6.390 -1.568 -0.620 IR 80 80 3 80 3 1 2 145 270 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 79 - G - - MR 81 80 3 83 3 1 3 143 269 -10.215 -0.005 -8.533 -4.602 -6.191 1.971 -5.337 D 82 80 3 83 3 0 0 141 266 -6.545 -1.723 -0.543 IR 83 83 3 83 3 1 2 144 269 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 78 - C - - MR 84 83 3 86 3 1 2 142 268 -10.215 -0.033 -5.516 -5.190 1.964 -5.694 -4.286 D 85 83 3 86 3 0 0 140 266 -6.545 -1.723 -0.543 IR 86 86 3 86 3 1 1 143 268 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 77 - A - - MR 87 86 3 89 3 1 2 141 267 -10.187 -0.010 -7.421 1.821 -4.160 -1.524 -3.999 D 88 86 3 89 3 0 0 139 265 -7.150 -1.421 -0.691 IR 89 89 3 89 3 1 1 142 267 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 76 - U - - MR 90 89 3 92 3 1 1 140 266 -10.197 -0.064 -4.552 -0.278 -1.066 -1.519 1.232 D 91 89 3 92 3 0 0 139 264 -6.965 -0.849 -1.195 IR 92 92 3 92 3 1 1 141 266 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 75 - A - - MR 93 92 3 95 3 1 1 140 265 -10.163 -0.024 -6.000 1.640 -2.802 -2.045 -1.010 D 94 92 3 95 3 0 0 138 263 -7.522 -1.529 -0.626 IR 95 95 3 95 3 1 1 140 265 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 27 ] - 74 - C - - MR 96 95 3 98 3 1 1 139 264 -10.165 -0.005 -8.483 -2.823 1.760 -3.226 -1.458 D 97 95 3 98 3 0 0 137 262 -7.490 -0.568 -1.645 IR 98 98 3 98 3 1 1 139 264 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 28 ] - 73 - C - - MR 99 98 3 101 3 1 1 138 263 -5.440 -0.201 -3.220 -4.354 1.925 -3.666 -3.753 D 100 98 3 101 3 0 0 136 261 -6.439 -1.476 -0.669 IR 101 101 3 101 3 1 1 138 263 -2.263 -0.420 -4.502 0.000 0.000 0.000 0.000 [ MATR 29 ] - 71 - G - - MR 102 101 3 104 3 1 1 137 262 -10.061 -0.013 -6.993 -1.643 -1.161 1.583 -2.080 D 103 101 3 104 3 0 0 135 261 -8.451 -0.249 -2.681 IR 104 104 3 104 3 1 1 137 262 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 30 ] - 70 - G - - MR 105 104 3 107 3 1 1 136 261 -10.214 -0.013 -6.949 -1.893 -3.012 1.749 -2.028 D 106 104 3 107 3 0 0 133 259 -6.569 -1.746 -0.532 IR 107 107 3 107 3 1 1 136 261 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 31 ] - 69 - A - - MR 108 107 3 110 3 1 1 135 260 -10.206 -0.005 -8.524 1.631 -1.796 -2.305 -1.279 D 109 107 3 110 3 0 0 132 258 -6.763 -1.465 -0.670 IR 110 110 3 110 3 1 1 135 260 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 32 ] - 68 - A - - MR 111 110 3 113 3 1 1 134 259 -10.213 -0.017 -6.481 1.642 -2.481 -1.306 -1.764 D 112 110 3 113 3 0 0 131 257 -6.608 -1.786 -0.515 IR 113 113 3 113 3 1 1 134 259 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 33 ] - 67 - u - - MR 114 113 3 116 5 1 1 133 258 -2.701 -0.280 -6.835 -8.248 -6.592 -0.375 0.083 -1.475 0.856 D 115 113 3 116 5 0 0 130 256 -5.657 -0.543 -3.283 -4.714 -2.708 IR 116 116 3 116 5 1 1 133 258 -1.921 -0.604 -7.543 -3.970 -6.816 0.000 0.000 0.000 0.000 [ MATP 34 ] 7 63 a u - - MP 117 116 3 121 6 2 2 132 257 -10.187 -10.126 -0.010 -8.902 -9.182 -9.577 -1.487 -0.987 -1.234 2.342 -1.664 -3.011 0.925 -2.035 -1.516 1.530 -2.599 -0.586 0.821 -2.405 -0.530 -1.535 ML 118 116 3 121 6 1 1 129 255 -6.433 -6.780 -1.179 -1.084 -6.629 -4.159 0.364 -0.224 -0.303 0.065 MR 119 116 3 121 6 1 1 129 254 -7.354 -6.083 -1.896 -6.061 -0.635 -4.275 0.843 -0.721 -0.519 -0.149 D 120 116 3 121 6 0 0 122 247 -9.373 -8.071 -3.869 -4.551 -4.568 -0.249 IL 121 121 5 121 6 1 1 131 256 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 130 256 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 8 62 C G - - MP 123 122 6 127 6 2 2 130 255 -10.193 -5.715 -0.049 -8.909 -7.632 -7.314 -3.662 -4.159 -3.798 0.532 -3.444 -5.229 3.109 -4.060 -4.295 0.266 -4.818 -1.887 1.705 -3.632 -0.936 -3.101 ML 124 122 6 127 6 1 1 127 253 -6.303 -6.649 -1.235 -1.058 -6.499 -4.028 0.515 -0.487 -0.202 -0.017 MR 125 122 6 127 6 1 1 127 253 -7.329 -2.342 -1.814 -6.036 -1.170 -4.250 0.769 -0.663 -0.492 -0.069 D 126 122 6 127 6 0 0 119 244 -9.373 -8.071 -3.869 -4.551 -4.568 -0.249 IL 127 127 5 127 6 1 1 129 254 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 129 254 -2.840 -0.351 -6.351 -4.519 -5.624 0.000 0.000 0.000 0.000 [ MATP 36 ] 9 60 u a - - MP 129 128 6 133 6 2 2 128 253 -10.198 -10.138 -0.021 -8.055 -8.684 -7.222 -2.229 -2.467 -2.356 0.767 -2.270 -3.091 1.867 -1.246 -2.673 0.324 -3.241 -0.865 2.457 -2.765 0.349 -1.573 ML 130 128 6 133 6 1 1 125 251 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 125 250 -7.101 -5.830 -1.415 -5.808 -0.942 -4.021 0.202 -0.364 -0.377 0.381 D 132 128 6 133 6 0 0 116 241 -9.566 -8.264 -4.061 -4.743 -4.761 -0.215 IL 133 133 5 133 6 1 1 127 252 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 127 252 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 10 59 u a - - MP 135 134 6 139 6 2 2 126 251 -10.192 -10.131 -0.079 -7.113 -8.512 -4.596 -3.047 -3.255 -2.691 0.891 -2.273 -4.005 2.255 -3.414 -3.057 0.754 -3.651 -1.508 2.380 -3.479 -0.146 -2.386 ML 136 134 6 139 6 1 1 123 249 -6.317 -6.663 -1.216 -1.072 -6.513 -4.043 0.368 -0.527 0.090 -0.072 MR 137 134 6 139 6 1 1 123 248 -7.013 -5.742 -1.574 -5.720 -0.854 -3.934 0.462 -0.451 -0.188 0.018 D 138 134 6 139 6 0 0 112 238 -9.750 -8.448 -4.245 -4.927 -4.945 -0.188 IL 139 139 5 139 6 1 1 125 250 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 140 140 6 140 5 1 1 125 250 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 11 58 c g - - MP 141 140 6 145 6 2 2 124 249 -10.127 -10.067 -0.200 -8.843 -7.627 -3.053 -1.845 -2.175 -2.062 1.450 -2.070 -2.354 2.116 -2.609 -1.211 0.853 -2.910 -0.727 1.607 -2.414 0.043 -1.486 ML 142 140 6 145 6 1 1 121 247 -6.445 -6.791 -1.424 -0.886 -6.641 -4.171 0.716 -0.624 -0.334 -0.128 MR 143 140 6 145 6 1 1 120 246 -7.023 -5.752 -1.661 -5.731 -0.864 -3.483 0.390 -0.499 0.022 -0.048 D 144 140 6 145 6 0 0 108 233 -10.664 -9.362 -5.159 -5.841 -5.859 -0.097 IL 145 145 5 145 6 1 1 124 249 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 146 146 6 146 5 1 1 123 249 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 12 57 c g - - MP 147 146 6 151 6 2 2 123 248 -9.941 -9.880 -0.230 -8.656 -8.496 -2.835 -1.744 -1.833 -1.940 1.255 -2.063 -3.065 2.029 -2.539 -2.276 0.888 -2.658 -0.598 1.706 -2.355 0.160 -0.493 ML 148 146 6 151 6 1 1 118 244 -6.415 -6.761 -1.476 -0.856 -6.611 -4.141 0.681 -0.599 -0.305 -0.109 MR 149 146 6 151 6 1 1 117 243 -7.094 -5.823 -1.426 -5.801 -0.935 -4.015 0.625 -0.561 -0.263 -0.080 D 150 146 6 151 6 0 0 105 230 -11.895 -10.593 -6.390 -7.072 -7.090 -0.040 IL 151 151 5 151 6 1 1 122 248 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 152 152 6 152 5 1 1 122 248 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 13 56 c g - - MP 153 152 6 157 4 2 2 122 247 -0.506 -4.475 -2.047 -6.841 -0.614 -1.811 -1.869 1.301 -1.532 -2.387 1.730 -2.323 -1.820 1.235 -2.314 -0.637 1.578 -2.115 0.131 -1.064 ML 154 152 6 157 4 1 1 111 236 -2.730 -4.065 -0.632 -2.795 0.681 -0.599 -0.305 -0.109 MR 155 152 6 157 4 1 1 104 229 -4.834 -3.863 -1.651 -0.791 0.334 -0.282 -0.263 0.116 D 156 152 6 157 4 0 0 103 229 -7.987 -2.501 -0.407 -3.938 IL 157 157 5 157 4 1 1 122 247 -0.327 -2.392 -6.455 -10.192 0.000 0.000 0.000 0.000 IR 158 158 6 158 3 1 1 115 240 -0.212 -2.888 -9.395 0.000 0.000 0.000 0.000 [ MATL 41 ] 27 - u - - - ML 159 158 6 161 3 1 1 16 34 -9.901 -0.005 -8.555 -0.027 -0.363 -0.012 0.321 D 160 158 6 161 3 0 0 16 35 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 28 - u - - - ML 162 161 3 164 3 1 1 15 33 -9.901 -0.005 -8.555 0.239 -0.326 -0.568 0.431 D 163 161 3 164 3 0 0 15 34 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 19 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 29 - u - - - ML 165 164 3 167 3 1 1 13 32 -9.901 -0.115 -3.722 0.191 -0.166 -0.423 0.289 D 166 164 3 167 3 0 0 14 33 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 18 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 30 - a - - - ML 168 167 3 170 3 1 1 12 30 -9.792 -0.499 -1.779 0.406 -0.691 -0.412 0.383 D 169 167 3 170 3 0 0 12 30 -8.018 -3.531 -0.137 IL 170 170 3 170 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 31 - a - - - ML 171 170 3 173 2 1 1 1 1 * 0.000 0.518 -0.429 -0.689 0.270 D 172 170 3 173 2 0 0 0 0 * 0.000 IL 173 173 3 173 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 46 ] - - - - - - E 174 173 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SpF59_sRNA ACC RF02440 DESC Streptococcus sRNA SpF59 (ldcC RNA) LENG 57 MAXL 188 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Jan 3 14:52:51 2019 COM [1] /nfs/production/xfam/rfam/rfam_rh7/software/bin/cmbuild -F CM SEED NSEQ 410 EFFN 49.488907 CKSUM 1930186072 STATS LOCAL MSV -7.8801 0.71908 STATS LOCAL VITERBI -8.2907 0.71908 STATS LOCAL FORWARD -3.6646 0.71908 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.37238 1.27745 1.24176 1.72106 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 0.00000 * 1 2.07428 1.93752 1.58397 0.64410 1 U - - < 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 2 3.32798 6.21933 0.04068 6.21211 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 3 0.13350 2.32265 4.55260 4.10909 3 A - - < 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 4 5.82482 0.06771 5.78349 2.82276 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.00582 6.11052 5.63123 1.46634 0.26236 1.09861 0.40547 5 5.84843 0.04487 5.80284 3.27091 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.04858 4.04702 3.50842 0.23744 1.55422 0.80578 0.59193 6 0.61618 2.35427 1.28424 2.42845 7 A - - < 1.38629 1.38629 1.38629 1.38629 0.00458 6.08245 6.08245 1.46634 0.26236 2.26945 0.10911 7 2.49427 0.42140 3.01448 1.55001 8 C - - < 1.38629 1.38629 1.38629 1.38629 0.01726 6.08382 4.21112 1.46634 0.26236 0.59267 0.80486 8 2.30235 1.27225 2.70645 0.59240 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.01389 6.08772 4.46316 1.46634 0.26236 1.41231 0.27916 9 2.13638 1.10141 2.29447 0.80139 10 u - - < 1.38629 1.38629 1.38629 1.38629 0.06892 6.08346 2.74397 1.46634 0.26236 2.31697 0.10377 10 1.52598 1.03514 1.87033 1.29703 11 c - - < 1.38629 1.38629 1.38629 1.38629 0.21454 6.02059 1.65728 1.46634 0.26236 3.73175 0.02424 11 1.65565 1.14211 1.96937 1.04884 12 u - - < 1.38629 1.38629 1.38629 1.38629 0.27161 5.81206 1.44879 1.46634 0.26236 3.65990 0.02607 12 1.43548 1.32932 1.57861 1.23415 13 u - - < 1.38629 1.38629 1.38629 1.38629 1.60089 0.23014 5.55630 1.65778 0.21142 0.01032 4.57837 13 1.50743 1.63917 1.30566 1.16032 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 14 1.23205 1.61140 1.81979 1.05947 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 15 1.27918 1.45848 1.67585 1.19734 29 u - - _ 1.38629 1.38629 1.38629 1.38629 0.08799 6.11052 2.50088 1.46634 0.26236 1.09861 0.40547 16 1.07320 1.98654 1.67213 1.09939 30 a - - _ 1.38629 1.38629 1.38629 1.38629 0.29094 6.02737 1.38617 1.46634 0.26236 1.24005 0.34160 17 0.95353 1.72288 1.97657 1.21225 31 a - - _ 1.38629 1.38629 1.38629 1.38629 1.84754 0.34011 2.03499 2.15601 0.12306 2.14429 0.12460 18 1.22616 1.65589 1.16957 1.58397 56 g - - > 1.38629 1.38629 1.38629 1.38629 0.08446 5.68868 2.55609 1.46634 0.26236 0.95293 0.48713 19 1.35664 2.12232 0.95071 1.44284 57 g - - > 1.38629 1.38629 1.38629 1.38629 0.00769 5.80972 5.36780 1.46634 0.26236 0.44248 1.02846 20 1.37082 2.13270 0.91260 1.48676 58 g - - > 1.38629 1.38629 1.38629 1.38629 0.00766 6.01394 5.26101 1.46634 0.26236 0.36321 1.18889 21 0.88068 2.40090 0.97983 2.12454 59 a - - > 1.38629 1.38629 1.38629 1.38629 0.00458 6.08200 6.08200 1.46634 0.26236 1.00813 0.45398 22 0.75539 2.94511 1.11954 1.88951 60 a - - > 1.38629 1.38629 1.38629 1.38629 0.04896 3.13409 5.46222 0.10073 2.34524 0.93466 0.49877 23 1.59201 3.04385 0.40905 2.47039 62 G - - > 1.38629 1.38629 1.38629 1.38629 0.00973 6.09817 4.90169 1.46634 0.26236 2.14353 0.12470 24 2.09209 1.33781 2.17213 0.69271 63 U - - > 1.38629 1.38629 1.38629 1.38629 0.21389 1.74479 4.02411 0.37313 1.16661 0.20400 1.68991 25 1.79266 1.28231 2.74435 0.70969 67 u - - - 1.38629 1.38629 1.38629 1.38629 0.00452 6.09506 6.09506 1.46634 0.26236 0.64012 0.74915 26 0.18916 3.71956 2.35688 2.93024 68 A - - - 1.38629 1.38629 1.38629 1.38629 0.00936 6.10454 4.94966 1.46634 0.26236 1.73834 0.19336 27 0.19150 2.88607 3.44762 2.44576 69 A - - - 1.38629 1.38629 1.38629 1.38629 0.00450 6.09967 6.09967 1.46634 0.26236 0.75693 0.63319 28 3.11665 3.98154 0.12188 2.96068 70 G - - - 1.38629 1.38629 1.38629 1.38629 0.12913 6.10569 2.12942 1.46634 0.26236 0.48870 0.95043 29 3.11014 2.09326 0.22519 3.38851 71 G - - - 1.38629 1.38629 1.38629 1.38629 0.03493 3.49399 5.53442 0.15782 1.92416 0.03682 3.31995 30 5.54470 0.02820 3.99261 5.21331 73 C - - - 1.38629 1.38629 1.38629 1.38629 0.04613 6.10925 3.14986 1.46634 0.26236 1.27327 0.32839 31 3.97598 0.11928 3.86637 2.62078 74 C - - - 1.38629 1.38629 1.38629 1.38629 0.02097 6.06777 3.99338 1.46634 0.26236 1.11463 0.39755 32 0.19240 4.58648 3.12701 2.11209 75 A - - - 1.38629 1.38629 1.38629 1.38629 0.02365 6.06594 3.86060 1.46634 0.26236 0.09245 2.42692 33 1.64386 2.34682 2.74795 0.43535 76 U - - - 1.38629 1.38629 1.38629 1.38629 0.01563 6.09244 4.32391 1.46634 0.26236 1.48473 0.25691 34 0.09549 5.76293 2.47157 5.66231 77 A - - - 1.38629 1.38629 1.38629 1.38629 0.00456 6.08484 6.08484 1.46634 0.26236 0.31292 1.31419 35 6.36444 0.00632 6.68597 5.70378 78 C - - - 1.38629 1.38629 1.38629 1.38629 0.00447 6.10635 6.10635 1.46634 0.26236 1.58439 0.22950 36 5.79476 7.01485 0.00576 6.32137 79 G - - - 1.38629 1.38629 1.38629 1.38629 0.00447 6.10635 6.10635 1.46634 0.26236 0.52788 0.89125 37 5.79868 7.01889 0.00573 6.32531 80 G - - - 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 38 0.05117 5.26746 4.50874 3.38974 81 A - - - 1.38629 1.38629 1.38629 1.38629 0.01707 4.21947 6.11052 0.27855 1.41420 1.09861 0.40547 39 3.89691 0.04802 4.34564 4.29626 83 C - - - 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 40 0.11505 3.95416 2.65838 3.94049 84 A - - - 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 41 5.76498 6.94895 0.01171 4.88661 85 G - - - 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 42 5.72773 0.26158 1.50582 5.28370 86 C - - - 1.38629 1.38629 1.38629 1.38629 0.00535 6.11052 5.77214 1.46634 0.26236 1.09861 0.40547 43 5.77068 0.10553 6.16718 2.35452 87 C - - - 1.38629 1.38629 1.38629 1.38629 0.04890 3.43601 4.16470 0.13271 2.08520 0.88618 0.53141 44 2.08819 3.47824 0.18092 4.53519 89 G - - - 1.38629 1.38629 1.38629 1.38629 0.02061 4.00925 6.09713 0.23177 1.57565 0.25153 1.50331 45 3.74918 5.88346 0.03053 5.58789 91 G - - > 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 46 3.37231 5.93656 0.04134 5.64198 92 G - - > 1.38629 1.38629 1.38629 1.38629 0.00552 6.11052 5.71756 1.46634 0.26236 1.09861 0.40547 47 4.21191 4.53090 2.28734 0.13596 93 U - - > 1.38629 1.38629 1.38629 1.38629 0.00445 6.10945 6.10945 1.46634 0.26236 0.85446 0.55428 48 6.21970 0.04592 6.11463 3.20195 94 C - - > 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 49 0.77565 1.69768 1.30133 2.47315 95 a - - > 1.38629 1.38629 1.38629 1.38629 0.02638 3.73753 6.11052 0.17699 1.81884 1.09861 0.40547 50 0.33421 3.67631 1.43874 3.83732 97 A - - : 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 51 0.71220 1.18997 3.45080 1.75164 98 a - - : 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 52 2.43310 2.83347 4.22085 0.17585 99 U - - : 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 53 5.75796 6.93513 0.01305 4.72864 100 G - - : 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 54 4.70382 0.01674 5.92938 5.32258 101 C - - : 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 55 6.03538 0.01428 6.30083 4.61017 102 C - - : 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 56 5.73432 4.86489 0.01299 6.23452 103 G - - : 1.38629 1.38629 1.38629 1.38629 0.00445 6.11052 6.11052 1.46634 0.26236 1.09861 0.40547 57 0.28992 3.10422 1.67733 3.91463 104 A - - : 1.38629 1.38629 1.38629 1.38629 0.00223 6.10830 * 1.46634 0.26236 0.00000 * //