INFERNAL1/a [1.1.4 | Dec 2020] NAME mascRNA-menRNA ACC RF01684 DESC MALAT1-associated small cytoplasmic RNA/MEN beta RNA STATES 182 NODES 45 CLEN 56 W 86 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:35:48 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 53 EFFN 4.493225 CKSUM 3030777057 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.20 NC 41.70 EFP7GF -12.4198 0.71930 ECMLC 0.73396 -4.80888 2.88099 1600000 339123 0.003539 ECMGC 0.37766 -18.42919 -3.44296 1600000 114828 0.003483 ECMLI 0.60803 -5.32505 3.70244 1600000 290428 0.004132 ECMGI 0.40236 -14.06822 -0.83482 1600000 82125 0.004871 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 86 130 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 IL 1 1 2 1 6 1 18 88 131 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 18 88 131 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 61 G C - - MP 3 2 3 7 6 2 22 87 130 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -4.379 -2.938 -4.296 1.016 -5.176 -2.500 -0.408 -4.901 -4.396 3.443 -4.668 -0.291 -0.683 -4.018 -2.406 -3.276 ML 4 2 3 7 6 1 16 85 128 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 16 85 128 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 12 82 125 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 17 86 129 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 18 86 129 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 60 a u - - MP 9 8 6 13 6 2 21 85 128 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -3.486 -2.659 -3.504 2.274 -3.873 -4.333 0.398 -3.867 -3.643 2.222 -4.088 1.081 0.838 -3.579 -1.503 -2.489 ML 10 8 6 13 6 1 16 83 127 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 15 83 127 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 11 81 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 17 84 128 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 17 84 127 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 59 c g - - MP 15 14 6 19 6 2 19 83 126 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -2.986 -3.077 -3.088 0.314 -1.214 -2.481 2.497 -3.105 -3.110 0.361 -3.629 -1.355 1.449 -3.264 1.629 -2.145 ML 16 14 6 19 6 1 15 82 125 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 15 82 126 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 11 80 124 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 16 82 126 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 16 82 125 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 58 g c - - MP 21 20 6 25 6 2 17 81 124 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -2.022 -1.608 -2.219 1.281 -2.291 -2.318 1.038 -1.710 -0.723 2.171 -2.752 0.526 0.881 -2.299 -0.452 -0.876 ML 22 20 6 25 6 1 14 81 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 14 81 125 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 11 80 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 15 80 124 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 15 80 124 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 57 C G - - MP 27 26 6 31 6 2 15 78 122 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -4.569 -4.561 -4.348 -0.729 -3.101 -4.832 3.413 -1.952 -4.358 -0.573 -4.698 -2.533 0.544 -4.663 0.730 -3.196 ML 28 26 6 31 6 1 13 80 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 13 81 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 11 80 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 14 79 123 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 14 79 122 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 56 u g - - MP 33 32 6 37 6 2 13 76 120 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -2.976 -3.085 -3.071 0.220 -2.577 -3.831 1.697 -3.114 -3.109 0.271 -3.619 -1.435 1.822 -0.173 2.156 -2.165 ML 34 32 6 37 6 1 12 80 124 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 12 81 124 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 10 80 123 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 13 78 122 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 13 78 121 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 55 G C - - MP 39 38 6 43 3 2 11 74 118 -6.219 -16.689 -0.020 -4.354 -2.955 -4.303 0.673 -5.223 -4.715 -0.496 -4.830 -2.031 3.404 -4.676 0.644 -0.759 -4.138 -2.483 -3.243 ML 40 38 6 43 3 1 11 81 124 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 3 1 11 81 124 -1.585 -1.585 -1.585 0.368 -0.385 -0.191 0.094 D 42 38 6 43 3 0 10 80 123 -1.585 -1.585 -1.585 IL 43 43 5 43 3 1 11 82 126 -0.610 -4.491 -1.736 0.000 0.000 0.000 0.000 IR 44 44 6 44 2 1 11 62 84 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 8 ] - - - - - - B 45 44 6 100 46 0 9 61 82 [ BEGR 31 ] - - - - - - S 46 45 1 47 5 0 0 33 55 -7.762 -0.024 -7.578 -7.790 -8.682 IL 47 47 2 47 5 1 1 35 56 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 36 54 C G - - MP 48 47 2 52 6 2 2 33 55 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -5.117 -5.152 -4.712 -1.263 -3.263 -5.048 3.585 -4.109 -4.754 -1.112 -4.995 -3.146 0.707 -5.112 -0.139 -3.556 ML 49 47 2 52 6 1 1 32 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 50 47 2 52 6 1 1 32 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 51 47 2 52 6 0 0 29 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 52 52 5 52 6 1 1 33 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 53 53 6 53 5 1 1 33 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 37 53 g c - - MP 54 53 6 58 6 2 2 31 53 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -3.383 -2.513 -3.466 1.775 -3.959 -4.237 0.123 -3.841 -0.254 2.456 -3.944 1.607 -0.111 -3.541 -1.679 -2.465 ML 55 53 6 58 6 1 1 30 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 6 58 6 1 1 30 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 6 58 6 0 0 27 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 31 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 31 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 38 52 G C - - MP 60 59 6 64 6 2 2 29 51 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -4.735 -3.155 -4.714 0.252 -5.658 -4.826 -0.839 -5.246 -4.577 3.551 -2.878 0.439 -1.110 -4.395 -2.856 -3.650 ML 61 59 6 64 6 1 1 28 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 28 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 26 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 29 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 29 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 39 51 G C - - MP 66 65 6 70 6 2 2 27 49 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -5.343 -3.465 -5.459 -0.204 -6.479 -5.116 -1.547 -5.879 -4.850 3.688 -5.155 0.254 -1.818 -4.924 -3.611 -4.335 ML 67 65 6 70 6 1 1 27 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 26 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 24 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 27 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 27 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 40 50 G C - - MP 72 71 6 76 4 2 2 25 47 -7.737 -7.944 -0.031 -6.358 -6.149 -3.792 -6.546 -0.811 -7.159 -5.212 -2.179 -6.774 -5.139 3.849 -5.402 -1.575 -2.540 -5.355 -4.320 -5.404 ML 73 71 6 76 4 1 1 26 47 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 4 1 1 25 46 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 75 71 6 76 4 0 0 24 45 -4.568 -4.250 -2.265 -0.520 IL 76 76 5 76 4 1 1 27 48 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 77 77 6 77 3 1 1 26 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - U - - - ML 78 77 6 80 3 1 1 23 44 -3.573 -0.136 -7.363 -2.889 -2.658 -3.666 1.859 D 79 77 6 80 3 0 0 20 41 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 1 25 46 -1.254 -0.873 -4.851 0.000 0.000 0.000 0.000 [ MATL 38 ] 44 - U - - - ML 81 80 3 83 3 1 1 18 37 -8.709 -0.012 -7.363 -2.889 -2.658 -3.666 1.859 D 82 80 3 83 3 0 0 18 37 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 45 - C - - - ML 84 83 3 86 3 1 1 17 36 -8.709 -0.012 -7.363 -1.108 1.586 -2.803 -1.356 D 85 83 3 86 3 0 0 17 35 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 46 - a - - - ML 87 86 3 89 3 1 1 16 34 -8.709 -0.012 -7.363 0.778 -0.899 0.267 -0.874 D 88 86 3 89 3 0 0 16 34 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 47 - A - - - ML 90 89 3 92 3 1 1 14 33 -8.709 -0.012 -7.363 1.905 -3.837 -3.341 -3.524 D 91 89 3 92 3 0 0 15 33 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 48 - g - - - ML 93 92 3 95 3 1 1 13 31 -8.709 -0.012 -7.363 0.062 -0.721 0.662 -0.383 D 94 92 3 95 3 0 0 13 32 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 49 - U - - - ML 96 95 3 98 2 1 1 1 1 * 0.000 -0.760 -1.097 -2.038 1.432 D 97 95 3 98 2 0 0 0 0 * 0.000 IL 98 98 3 98 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 44 ] - - - - - - E 99 98 3 -1 0 0 0 0 0 [ BEGL 9 ] - - - - - - S 100 45 1 101 1 0 0 40 59 0.000 [ BIF 10 ] - - - - - - B 101 100 1 102 134 0 0 40 59 [ BEGL 11 ] - - - - - - S 102 101 1 103 4 0 0 24 42 -0.033 -7.285 -6.693 -7.333 [ MATP 12 ] 8 18 G C - - MP 103 102 1 107 6 2 2 24 42 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -6.149 -3.792 -6.546 -0.811 -7.159 -5.212 -2.179 -6.774 -5.139 3.849 -5.402 -1.575 -2.540 -5.355 -4.320 -5.404 ML 104 102 1 107 6 1 1 23 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 105 102 1 107 6 1 1 23 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 106 102 1 107 6 0 0 21 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 107 107 5 107 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 108 108 6 108 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 13 ] 9 17 U A - - MP 109 108 6 113 6 2 2 22 40 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -5.269 -5.297 -4.908 -1.471 -3.515 -5.274 1.002 -4.340 -4.940 -1.321 -5.213 -3.318 3.590 -5.283 -0.558 -3.677 ML 110 108 6 113 6 1 1 22 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 111 108 6 113 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 112 108 6 113 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 113 113 5 113 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 114 114 6 114 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 10 16 G C - - MP 115 114 6 119 4 2 2 20 38 -7.737 -7.944 -0.031 -6.358 -4.537 -3.065 -4.493 0.339 -5.283 -4.626 -0.582 -5.063 -4.470 3.576 -2.443 -0.796 -0.863 -2.126 -2.571 -3.480 ML 116 114 6 119 4 1 1 21 40 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 117 114 6 119 4 1 1 21 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 118 114 6 119 4 0 0 20 38 -4.568 -4.250 -2.265 -0.520 IL 119 119 5 119 4 1 1 23 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 120 120 6 120 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - G - - - ML 121 120 6 123 3 1 1 16 34 -8.709 -0.012 -7.363 -1.964 -3.339 1.791 -2.444 D 122 120 6 123 3 0 0 16 35 -6.174 -1.687 -0.566 IL 123 123 3 123 3 1 1 20 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - U - - - ML 124 123 3 126 3 1 1 14 33 -1.540 -0.622 -7.363 -1.430 -1.292 -2.024 1.573 D 125 123 3 126 3 0 0 13 32 -6.174 -1.687 -0.566 IL 126 126 3 126 3 1 1 14 32 -2.662 -0.290 -5.362 0.000 0.000 0.000 0.000 [ MATL 17 ] 14 - G - - - ML 127 126 3 129 3 1 1 13 31 -8.709 -0.012 -7.363 -2.515 -3.711 1.845 -2.676 D 128 126 3 129 3 0 0 13 32 -6.174 -1.687 -0.566 IL 129 129 3 129 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - G - - - ML 130 129 3 132 2 1 1 1 1 * 0.000 -3.022 -4.412 1.909 -3.762 D 131 129 3 132 2 0 0 0 0 * 0.000 IL 132 132 3 132 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 19 ] - - - - - - E 133 132 3 -1 0 0 0 0 0 [ BEGR 20 ] - - - - - - S 134 101 1 135 5 0 0 28 46 -7.762 -0.056 -7.578 -7.790 -5.389 IL 135 135 2 135 5 1 1 29 48 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 21 ] 19 35 u a - - MP 136 135 2 140 6 2 2 28 46 -9.443 -9.382 -0.017 -8.159 -8.439 -8.834 -2.963 -0.975 -3.059 0.824 -2.947 -3.880 1.129 -3.272 -3.133 2.099 -3.641 -0.284 2.248 -3.165 -0.755 -2.104 ML 137 135 2 140 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 138 135 2 140 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 139 135 2 140 6 0 0 25 43 -9.396 -8.094 -1.831 -4.573 -4.591 -0.666 IL 140 140 5 140 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 141 141 6 141 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 22 ] 20 34 C G - - MP 142 141 6 146 6 2 2 26 44 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -5.111 -5.166 -4.688 -1.297 -3.225 -5.008 3.550 -4.073 -4.733 -1.160 -4.969 -3.192 0.270 -5.095 0.710 -3.539 ML 143 141 6 146 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 144 141 6 146 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 145 141 6 146 6 0 0 22 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 146 146 5 146 6 1 1 26 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 147 147 6 147 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 23 ] 21 33 C G - - MP 148 147 6 152 6 2 2 24 42 -9.461 -9.400 -0.016 -8.177 -8.457 -8.852 -6.904 -6.874 -3.965 -3.061 -4.881 -6.489 3.915 -6.082 -6.635 -2.910 -6.426 -4.840 -1.722 -6.973 -2.953 -5.462 ML 149 147 6 152 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 150 147 6 152 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 151 147 6 152 6 0 0 20 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 152 152 5 152 6 1 1 24 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 153 153 6 153 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 24 ] 22 32 u a - - MP 154 153 6 158 6 2 2 22 40 -9.461 -9.400 -0.032 -8.177 -8.457 -6.319 -4.214 -4.176 -4.100 -0.351 -2.996 -4.692 2.328 -3.714 -4.089 -0.186 -4.492 -2.117 2.684 -4.364 0.977 -2.943 ML 155 153 6 158 6 1 1 20 39 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 156 153 6 158 6 1 1 20 39 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 157 153 6 158 6 0 0 18 36 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 158 158 5 158 6 1 1 22 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 159 159 6 159 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 25 ] 23 31 G C - - MP 160 159 6 164 6 2 2 20 38 -9.446 -9.385 -0.077 -6.622 -5.600 -5.765 -3.946 -2.683 -3.845 1.667 -4.725 -4.492 0.003 -4.390 -4.099 3.103 -4.427 0.288 0.016 -3.772 -1.986 -2.789 ML 161 159 6 164 6 1 1 18 37 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 162 159 6 164 6 1 1 18 37 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 163 159 6 164 6 0 0 16 35 -9.341 -8.039 -3.836 -4.518 -4.536 -0.255 IL 164 164 5 164 6 1 1 20 38 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 165 165 6 165 5 1 1 19 38 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 26 ] 24 30 G C - - MP 166 165 6 170 4 2 2 18 36 -1.586 -7.795 -0.624 -6.210 -3.321 -2.413 -3.282 1.327 -3.841 -2.626 0.448 -3.810 -2.405 3.059 -3.938 -0.191 0.198 -3.232 -1.417 -1.559 ML 167 165 6 170 4 1 1 16 34 -3.874 -4.056 -0.461 -2.786 0.287 -0.596 0.258 -0.116 MR 168 165 6 170 4 1 1 17 35 -1.958 -4.215 -2.083 -1.143 -0.007 0.385 -0.703 0.118 D 169 165 6 170 4 0 0 15 34 -2.874 -2.871 -1.877 -1.137 IL 170 170 5 170 4 1 1 17 35 -3.540 -0.422 -2.662 -6.709 0.000 0.000 0.000 0.000 IR 171 171 6 171 3 1 1 16 34 -2.637 -0.340 -4.344 0.000 0.000 0.000 0.000 [ MATL 27 ] 26 - u - - - ML 172 171 6 174 3 1 1 14 33 -8.688 -0.012 -7.342 0.412 -0.470 -0.768 0.444 D 173 171 6 174 3 0 0 14 33 -6.465 -1.978 -0.444 IL 174 174 3 174 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 27 - u - - - ML 175 174 3 177 3 1 1 13 31 -8.688 -0.012 -7.342 -0.708 0.245 -1.249 0.834 D 176 174 3 177 3 0 0 13 32 -6.465 -1.196 -0.857 IL 177 177 3 177 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 28 - U - - - ML 178 177 3 180 2 1 1 1 1 * 0.000 -0.817 -0.621 -1.070 1.205 D 179 177 3 180 2 0 0 0 0 * 0.000 IL 180 180 3 180 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 181 180 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME mascRNA-menRNA ACC RF01684 DESC MALAT1-associated small cytoplasmic RNA/MEN beta RNA LENG 56 MAXL 127 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:35:48 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 53 EFFN 8.413879 CKSUM 3030777057 STATS LOCAL MSV -7.7105 0.71930 STATS LOCAL VITERBI -8.4981 0.71930 STATS LOCAL FORWARD -3.1983 0.71930 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.95112 1.27095 1.04498 1.48889 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 0.00000 * 1 2.05573 3.04988 0.24230 3.22352 1 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 2 0.96438 2.92503 0.82854 2.05238 2 g - - ( 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 3 2.88570 0.79158 2.71317 0.85631 3 c - - ( 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 4 1.67492 1.98338 0.66450 1.82919 4 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 5 3.87204 0.23688 3.70283 1.79911 5 C - - ( 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 6 3.31003 1.74214 3.15781 0.29327 6 U - - ( 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 7 2.51037 3.53163 0.15620 3.37801 7 G - - ( 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 8 3.68895 4.73737 0.04353 4.72858 8 G - - < 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 9 4.28939 2.40054 4.16350 0.12776 9 U - - < 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 10 3.08348 3.89091 0.11143 3.23869 10 G - - < 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 11 3.12180 4.22064 0.09845 3.35270 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 12 2.80992 2.55423 3.12485 0.20078 12 U - - _ 1.38629 1.38629 1.38629 1.38629 0.51326 0.93653 4.65925 0.04765 3.06751 1.09861 0.40547 13 3.76507 4.62805 0.06457 3.52046 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 14 4.17478 5.21511 0.03052 4.68368 15 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 15 3.98298 0.12601 3.26644 2.78670 16 C - - > 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 16 0.16752 4.29225 2.09918 4.01706 17 A - - > 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 17 4.72807 0.05623 4.57691 3.33691 18 C - - > 1.38629 1.38629 1.38629 1.38629 0.04608 4.65925 3.33645 1.46634 0.26236 1.09861 0.40547 18 1.99820 2.29919 1.07176 0.86352 19 u - - < 1.38629 1.38629 1.38629 1.38629 0.01965 4.63281 4.63281 1.46634 0.26236 0.42708 1.05673 19 4.12869 0.20859 3.99970 1.87178 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 20 5.08394 0.01978 5.54528 4.65764 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 21 3.44298 1.15389 3.22967 0.48931 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.04132 4.65925 3.47369 1.46634 0.26236 1.09861 0.40547 22 1.50038 2.92694 0.43827 2.54792 23 G - - < 1.38629 1.38629 1.38629 1.38629 0.03652 4.63748 3.64280 1.46634 0.26236 1.66250 0.21031 23 1.78965 2.53377 0.41858 2.34712 24 G - - < 1.38629 1.38629 1.38629 1.38629 0.42949 1.08083 4.62085 0.05705 2.89224 0.75698 0.63315 24 1.06862 1.75982 1.98968 1.05641 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01945 4.64297 4.64297 1.46634 0.26236 1.54839 0.23901 25 2.14118 1.13286 2.41729 0.75245 27 u - - _ 1.38629 1.38629 1.38629 1.38629 0.01945 4.64297 4.64297 1.46634 0.26236 0.55370 0.85524 26 2.24999 1.90864 2.21818 0.45018 28 U - - _ 1.38629 1.38629 1.38629 1.38629 0.49770 1.05736 3.10781 0.05368 2.95145 1.09861 0.40547 27 2.58578 0.47850 2.46874 1.51295 30 C - - > 1.38629 1.38629 1.38629 1.38629 0.01983 4.62339 4.62339 1.46634 0.26236 1.01047 0.45263 28 2.75258 0.54951 2.73513 1.22376 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.01955 4.63748 4.63748 1.46634 0.26236 0.47695 0.96936 29 0.73948 3.39784 0.80149 3.20566 32 a - - > 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 30 4.79947 5.70332 0.01579 5.49652 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 31 3.00564 4.14687 0.08974 3.88668 34 G - - > 1.38629 1.38629 1.38629 1.38629 0.04608 4.65925 3.33645 1.46634 0.26236 1.09861 0.40547 32 0.91796 1.09096 2.12191 1.93122 35 a - - > 1.38629 1.38629 1.38629 1.38629 0.01965 4.63281 4.63281 1.46634 0.26236 0.42708 1.05673 33 4.08457 0.18860 3.91996 2.00092 36 C - - < 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 34 1.39920 3.27630 0.40097 3.08415 37 G - - < 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 35 3.02122 3.91149 0.09592 3.78485 38 G - - < 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 36 3.34209 4.38220 0.06375 4.27582 39 G - - < 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 37 3.67289 4.70941 0.04458 4.68967 40 G - - < 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 38 4.17063 3.92207 4.72317 0.04513 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.11693 2.29383 4.65925 0.75922 0.63117 1.09861 0.40547 39 4.17063 3.92207 4.72317 0.04513 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 40 2.34886 0.17940 4.04785 2.97025 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 41 0.77419 2.09977 1.11671 2.41819 46 a - - _ 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 42 0.02947 4.84355 4.46156 4.64385 47 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 43 1.39580 1.93594 0.81000 1.81268 48 g - - _ 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 44 2.09237 2.39355 3.30994 0.28931 49 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 45 4.77331 0.05523 4.60254 3.34505 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 46 4.43202 0.14909 4.23724 2.18776 51 C - - > 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 47 4.00046 0.20898 3.41680 1.98441 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 48 2.21213 1.05546 3.07601 0.70046 53 u - - > 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 49 2.45366 4.07203 0.13321 3.83050 54 G - - > 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 50 3.10876 0.30950 3.34779 1.68002 55 C - - ) 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 51 1.39939 2.13108 0.52891 3.09453 56 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 52 2.87763 3.85832 0.12777 3.15646 57 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 53 1.86961 0.93495 1.94745 1.16933 58 c - - ) 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 54 1.65753 2.70583 0.39538 2.67144 59 G - - ) 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 55 2.16596 1.27366 2.73361 0.61513 60 U - - ) 1.38629 1.38629 1.38629 1.38629 0.01913 4.65925 4.65925 1.46634 0.26236 1.09861 0.40547 56 3.48704 0.27602 3.17555 1.77878 61 C - - ) 1.38629 1.38629 1.38629 1.38629 0.00961 4.64973 * 1.46634 0.26236 0.00000 * //