INFERNAL1/a [1.1.4 | Dec 2020] NAME MFR ACC RF01510 DESC M. florum riboswitch STATES 198 NODES 49 CLEN 63 W 79 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:25:30 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 3 EFFN 2.071289 CKSUM 3202886032 NULL 0.000 0.000 0.000 0.000 GA 82.70 TC 82.70 NC 81.20 EFP7GF -7.9048 0.72275 ECMLC 0.67053 -4.18858 4.14699 1600000 321036 0.003738 ECMGC 0.44879 -15.17301 -2.80190 1600000 103107 0.003879 ECMLI 0.61205 -3.49701 5.33091 1600000 266521 0.004502 ECMGI 0.46945 -11.04742 0.18823 1600000 78127 0.005120 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 6 0 1 79 99 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 IL 1 1 2 1 6 1 15 81 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 2 2 3 2 5 1 16 81 100 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 1 ] 1 64 a u - - MP 3 2 3 7 6 2 20 79 99 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 0.828 -2.213 -2.682 2.363 -2.763 -3.637 0.934 -2.935 -2.685 1.407 -3.233 -0.159 0.685 -2.899 -0.758 -1.764 ML 4 2 3 7 6 1 13 78 97 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 5 2 3 7 6 1 13 78 97 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 6 2 3 7 6 0 9 75 95 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 7 7 5 7 6 1 15 79 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 8 8 6 8 5 1 15 79 98 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 2 ] 2 63 C G - - MP 9 8 6 13 6 2 19 77 97 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -4.669 -4.585 -4.339 -0.807 -3.031 -4.735 3.586 -3.853 -4.392 -0.583 -4.640 -2.534 0.472 -4.730 -0.740 -3.228 ML 10 8 6 13 6 1 13 76 95 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 6 13 6 1 13 76 95 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 6 13 6 0 8 73 93 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 15 77 97 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 15 77 96 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 3 62 u a - - MP 15 14 6 19 6 2 18 75 95 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.499 -3.479 -3.433 0.157 -2.501 -4.050 1.787 -3.177 -3.453 0.371 -3.871 -1.546 2.616 -3.675 1.388 -2.366 ML 16 14 6 19 6 1 13 74 93 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 12 74 93 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 8 71 91 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 14 75 95 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 14 75 94 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 4 61 U A - - MP 21 20 6 25 6 2 17 73 93 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -4.317 -4.145 -4.141 -0.431 -3.056 -4.694 1.274 -3.761 -4.145 -0.196 -4.512 -2.040 3.385 -4.464 -0.729 -2.956 ML 22 20 6 25 6 1 12 72 92 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 12 72 91 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 8 69 89 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 13 73 93 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 14 73 92 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 5 60 A U - - MP 27 26 6 31 6 2 15 71 91 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.889 -2.896 -3.901 3.392 -4.288 -5.360 0.018 -3.936 -3.788 0.972 -4.341 -0.356 -0.399 -4.531 -1.922 -2.729 ML 28 26 6 31 6 1 11 70 90 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 6 1 11 70 90 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 30 26 6 31 6 0 7 68 87 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 31 31 5 31 6 1 13 71 91 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 32 32 6 32 5 1 13 71 90 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 6 59 U A - - MP 33 32 6 37 6 2 13 69 89 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -4.317 -4.145 -4.141 -0.431 -3.056 -4.694 1.274 -3.761 -4.145 -0.196 -4.512 -2.040 3.385 -4.464 -0.729 -2.956 ML 34 32 6 37 6 1 10 68 88 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 35 32 6 37 6 1 9 68 88 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 36 32 6 37 6 0 7 66 86 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 37 37 5 37 6 1 11 69 89 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 38 38 6 38 5 1 11 69 88 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 7 58 A U - - MP 39 38 6 43 4 2 11 67 87 -7.005 -7.212 -0.051 -5.626 -3.889 -2.896 -3.901 3.392 -4.288 -5.360 0.018 -3.936 -3.788 0.972 -4.341 -0.356 -0.399 -4.531 -1.922 -2.729 ML 40 38 6 43 4 1 9 68 88 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 41 38 6 43 4 1 8 67 87 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 42 38 6 43 4 0 7 66 86 -4.568 -4.250 -2.265 -0.520 IL 43 43 5 43 4 1 10 69 89 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 44 44 6 44 3 1 10 68 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - C - - - ML 45 44 6 47 3 1 9 65 84 -8.017 -0.020 -6.671 -1.871 1.657 -2.698 -1.258 D 46 44 6 47 3 0 6 64 83 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 9 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - A - - - ML 48 47 3 50 3 1 8 64 83 -8.017 -0.020 -6.671 1.741 -2.479 -2.100 -2.032 D 49 47 3 50 3 0 6 62 82 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 8 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - g - - - ML 51 50 3 53 3 1 7 63 82 -8.404 -0.018 -6.722 -0.460 -1.130 0.755 0.175 D 52 50 3 53 3 0 5 62 81 -5.620 -0.734 -1.403 IL 53 53 3 53 3 1 7 64 83 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 57 - C - - MR 54 53 3 56 3 1 6 62 81 -8.404 -0.018 -6.722 -1.871 1.657 -2.698 -1.258 D 55 53 3 56 3 0 5 60 80 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 6 63 82 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 56 - A - - MR 57 56 3 59 2 1 5 61 80 -8.420 -0.004 1.741 -2.479 -2.100 -2.032 D 58 56 3 59 2 0 4 60 79 -4.432 -0.068 IR 59 59 3 59 2 1 6 62 81 -1.823 -0.479 0.000 0.000 0.000 0.000 [ BIF 13 ] - - - - - - B 60 59 3 61 120 0 4 60 79 [ BEGL 14 ] - - - - - - S 61 60 1 62 4 0 0 33 52 -0.044 -6.863 -6.270 -6.910 [ MATP 15 ] 11 29 g c - - MP 62 61 1 66 6 2 2 33 52 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.659 -2.488 -3.743 1.032 -4.419 -4.672 0.026 -3.982 -3.606 2.708 -4.071 2.152 -0.252 -3.963 -1.922 -2.578 ML 63 61 1 66 6 1 1 31 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 64 61 1 66 6 1 1 31 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 65 61 1 66 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 66 66 5 66 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 67 67 6 67 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 12 28 G C - - MP 68 67 6 72 6 2 2 31 50 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.745 -2.598 -3.759 1.777 -4.278 -4.459 0.220 -4.080 -3.741 3.085 -4.165 -0.224 -0.086 -3.802 -1.755 -2.660 ML 69 67 6 72 6 1 1 29 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 70 67 6 72 6 1 1 29 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 71 67 6 72 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 72 72 5 72 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 73 73 6 73 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 13 27 u a - - MP 74 73 6 78 6 2 2 29 48 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.489 -3.471 -3.423 0.162 -2.493 -4.039 1.793 -3.168 -3.444 0.374 -3.862 -1.542 2.568 -3.665 1.481 -2.358 ML 75 73 6 78 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 76 73 6 78 6 1 1 27 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 77 73 6 78 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 78 78 5 78 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 79 79 6 79 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 14 26 A U - - MP 80 79 6 84 6 2 2 27 46 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.889 -2.896 -3.901 3.392 -4.288 -5.360 0.018 -3.936 -3.788 0.972 -4.341 -0.356 -0.399 -4.531 -1.922 -2.729 ML 81 79 6 84 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 82 79 6 84 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 83 79 6 84 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 84 84 5 84 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 85 85 6 85 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 15 25 G C - - MP 86 85 6 90 6 2 2 25 44 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.745 -2.598 -3.759 1.777 -4.278 -4.459 0.220 -4.080 -3.741 3.085 -4.165 -0.224 -0.086 -3.802 -1.755 -2.660 ML 87 85 6 90 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 88 85 6 90 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 89 85 6 90 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 90 90 5 90 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 91 91 6 91 5 1 1 24 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 16 24 C G - - MP 92 91 6 96 4 2 2 23 42 -7.005 -7.212 -0.051 -5.626 -4.669 -4.585 -4.339 -0.807 -3.031 -4.735 3.586 -3.853 -4.392 -0.583 -4.640 -2.534 0.472 -4.730 -0.740 -3.228 ML 93 91 6 96 4 1 1 24 43 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 94 91 6 96 4 1 1 23 42 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 95 91 6 96 4 0 0 22 41 -4.568 -4.250 -2.265 -0.520 IL 96 96 5 96 4 1 1 25 44 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 97 97 6 97 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 17 - A - - - ML 98 97 6 100 3 1 1 20 39 -8.017 -0.020 -6.671 1.741 -2.479 -2.100 -2.032 D 99 97 6 100 3 0 0 19 38 -6.174 -1.687 -0.566 IL 100 100 3 100 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 18 - U - - - ML 101 100 3 103 3 1 1 19 37 -8.017 -0.020 -6.671 -1.585 -1.564 -2.323 1.645 D 102 100 3 103 3 0 0 18 37 -6.174 -1.687 -0.566 IL 103 103 3 103 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 19 - A - - - ML 104 103 3 106 3 1 1 17 36 -8.017 -0.020 -6.671 1.741 -2.479 -2.100 -2.032 D 105 103 3 106 3 0 0 17 36 -6.174 -1.687 -0.566 IL 106 106 3 106 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 20 - a - - - ML 107 106 3 109 3 1 1 16 35 -8.017 -0.020 -6.671 0.858 -0.960 -1.091 0.267 D 108 106 3 109 3 0 0 16 34 -6.174 -1.687 -0.566 IL 109 109 3 109 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 21 - u - - - ML 110 109 3 112 3 1 1 15 33 -8.017 -0.020 -6.671 -0.775 0.138 -1.540 0.979 D 111 109 3 112 3 0 0 15 33 -6.174 -1.687 -0.566 IL 112 112 3 112 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 22 - G - - - ML 113 112 3 115 3 1 1 13 31 -8.017 -0.020 -6.671 -1.694 -2.931 1.748 -2.319 D 114 112 3 115 3 0 0 13 32 -6.174 -1.687 -0.566 IL 115 115 3 115 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 23 - G - - - ML 116 115 3 118 2 1 1 1 1 * 0.000 -1.694 -2.931 1.748 -2.319 D 117 115 3 118 2 0 0 0 0 * 0.000 IL 118 118 3 118 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 28 ] - - - - - - E 119 118 3 -1 0 0 0 0 0 [ BEGR 29 ] - - - - - - S 120 60 1 121 3 0 0 40 59 -8.017 -0.020 -6.671 IL 121 121 2 121 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 30 - G - - - ML 122 121 2 124 3 1 1 40 59 -8.017 -0.020 -6.671 -1.694 -2.931 1.748 -2.319 D 123 121 2 124 3 0 0 38 58 -6.174 -1.687 -0.566 IL 124 124 3 124 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 31 - A - - - ML 125 124 3 127 3 1 1 39 58 -2.511 -0.296 -6.671 1.741 -2.479 -2.100 -2.032 D 126 124 3 127 3 0 0 37 56 -6.174 -1.687 -0.566 IL 127 127 3 127 3 1 1 39 58 -1.941 -0.516 -4.641 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - c - - - ML 128 127 3 130 3 1 1 37 56 -8.017 -0.020 -6.671 0.211 0.714 -1.290 -0.334 D 129 127 3 130 3 0 0 36 55 -6.174 -1.687 -0.566 IL 130 130 3 130 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - C - - - ML 131 130 3 133 3 1 1 36 55 -8.017 -0.020 -6.671 -1.871 1.657 -2.698 -1.258 D 132 130 3 133 3 0 0 35 54 -6.174 -1.687 -0.566 IL 133 133 3 133 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - c - - - ML 134 133 3 136 3 1 1 35 54 -8.017 -0.020 -6.671 -0.807 0.797 -1.609 0.447 D 135 133 3 136 3 0 0 34 53 -6.174 -1.687 -0.566 IL 136 136 3 136 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - G - - - ML 137 136 3 139 3 1 1 34 53 -8.017 -0.020 -6.671 -1.694 -2.931 1.748 -2.319 D 138 136 3 139 3 0 0 33 52 -6.174 -1.687 -0.566 IL 139 139 3 139 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - C - - - ML 140 139 3 142 5 1 1 33 51 -7.140 -0.038 -6.955 -7.167 -8.059 -1.871 1.657 -2.698 -1.258 D 141 139 3 142 5 0 0 31 50 -4.959 -0.803 -4.221 -2.596 -2.508 IL 142 142 3 142 5 1 1 33 52 -2.408 -0.496 -4.087 -5.920 -5.193 0.000 0.000 0.000 0.000 [ MATP 37 ] 38 55 C G - - MP 143 142 3 147 6 2 2 32 50 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -4.669 -4.585 -4.339 -0.807 -3.031 -4.735 3.586 -3.853 -4.392 -0.583 -4.640 -2.534 0.472 -4.730 -0.740 -3.228 ML 144 142 3 147 6 1 1 30 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 145 142 3 147 6 1 1 30 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 146 142 3 147 6 0 0 28 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 147 147 5 147 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 148 148 6 148 5 1 1 31 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 38 ] 39 54 c g - - MP 149 148 6 153 6 2 2 30 48 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.051 -2.903 -3.105 1.486 -2.500 -3.874 2.206 -3.039 -3.118 1.088 -3.612 -0.891 1.917 -3.268 -0.212 -2.050 ML 150 148 6 153 6 1 1 28 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 151 148 6 153 6 1 1 28 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 152 148 6 153 6 0 0 26 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 153 153 5 153 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 154 154 6 154 5 1 1 29 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 39 ] 40 53 u a - - MP 155 154 6 159 6 2 2 28 46 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.703 -3.636 -3.581 0.102 -2.530 -4.156 2.424 -3.238 -3.594 0.350 -3.985 -1.616 2.614 -3.844 -0.206 -2.466 ML 156 154 6 159 6 1 1 26 45 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 157 154 6 159 6 1 1 26 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 158 154 6 159 6 0 0 24 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 159 159 5 159 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 160 160 6 160 5 1 1 27 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 40 ] 41 52 G C - - MP 161 160 6 165 6 2 2 26 44 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.745 -2.598 -3.759 1.777 -4.278 -4.459 0.220 -4.080 -3.741 3.085 -4.165 -0.224 -0.086 -3.802 -1.755 -2.660 ML 162 160 6 165 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 163 160 6 165 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 164 160 6 165 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 165 165 5 165 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 166 166 6 166 5 1 1 25 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 41 ] 42 51 a u - - MP 167 166 6 171 6 2 2 24 42 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.388 -2.426 -3.496 2.747 -4.081 -4.807 0.147 -3.680 -3.369 1.541 -3.919 1.617 -0.104 -3.922 -1.738 -2.339 ML 168 166 6 171 6 1 1 22 41 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 169 166 6 171 6 1 1 22 41 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 170 166 6 171 6 0 0 20 39 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 171 171 5 171 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 172 172 6 172 5 1 1 23 42 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 42 ] 43 50 G C - - MP 173 172 6 177 6 2 2 22 40 -9.129 -9.069 -0.021 -7.845 -8.125 -8.520 -3.787 -2.618 -3.800 1.704 -4.327 -4.468 0.184 -4.125 -3.773 3.128 -4.191 -0.246 -0.124 -3.827 -1.795 -2.700 ML 174 172 6 177 6 1 1 21 40 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 175 172 6 177 6 1 1 21 40 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 176 172 6 177 6 0 0 19 38 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 177 177 5 177 6 1 1 21 40 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 178 178 6 178 5 1 1 21 40 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 43 ] 44 49 A U - - MP 179 178 6 183 4 2 2 20 38 -7.005 -7.212 -0.051 -5.626 -3.889 -2.896 -3.901 3.392 -4.288 -5.360 0.018 -3.936 -3.788 0.972 -4.341 -0.356 -0.399 -4.531 -1.922 -2.729 ML 180 178 6 183 4 1 1 21 39 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 181 178 6 183 4 1 1 20 39 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 182 178 6 183 4 0 0 19 38 -4.568 -4.250 -2.265 -0.520 IL 183 183 5 183 4 1 1 22 41 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 184 184 6 184 3 1 1 21 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 45 - C - - - ML 185 184 6 187 3 1 1 16 35 -8.017 -0.020 -6.671 -1.871 1.657 -2.698 -1.258 D 186 184 6 187 3 0 0 16 34 -6.174 -1.687 -0.566 IL 187 187 3 187 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 46 - C - - - ML 188 187 3 190 3 1 1 15 33 -8.017 -0.020 -6.671 -1.871 1.657 -2.698 -1.258 D 189 187 3 190 3 0 0 15 33 -6.174 -1.687 -0.566 IL 190 190 3 190 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - a - - - ML 191 190 3 193 3 1 1 13 31 -8.017 -0.020 -6.671 0.308 -0.867 0.033 0.252 D 192 190 3 193 3 0 0 13 32 -6.174 -1.687 -0.566 IL 193 193 3 193 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - A - - - ML 194 193 3 196 2 1 1 1 1 * 0.000 1.741 -2.479 -2.100 -2.032 D 195 193 3 196 2 0 0 0 0 * 0.000 IL 196 196 3 196 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 48 ] - - - - - - E 197 196 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME MFR ACC RF01510 DESC M. florum riboswitch LENG 63 MAXL 146 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:25:30 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 3 EFFN 2.674805 CKSUM 3202886032 STATS LOCAL MSV -8.4101 0.72275 STATS LOCAL VITERBI -8.9512 0.72275 STATS LOCAL FORWARD -3.1658 0.72275 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.30615 1.39929 1.41331 1.43117 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.61188 2.17228 1.55605 2.01903 1 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.38402 0.20207 3.16317 2.23714 2 C - - ( 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.59207 1.53126 2.36553 0.48618 3 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.15686 2.03849 2.92190 0.25698 4 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 0.28294 2.96649 1.97031 2.89074 5 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.15085 2.03806 2.91909 0.25758 6 U - - ( 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.28331 2.96472 1.96994 2.88826 7 A - - ( 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.03404 0.16723 3.60964 2.54070 8 C - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.13112 3.39418 3.10331 3.11416 9 A - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 1.80087 2.27400 0.79311 1.27471 10 g - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 1.99539 2.83316 0.30601 2.67602 11 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 1.41571 2.64949 0.50007 2.52480 12 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.58609 1.52848 2.36357 0.48819 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 0.28322 2.96513 1.97003 2.88884 14 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 1.41534 2.64758 0.50079 2.52219 15 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.35342 0.20487 3.14803 2.23169 16 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.13112 3.39418 3.10331 3.11416 17 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.75622 2.69553 3.27911 0.18476 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.13112 3.39418 3.10331 3.11416 19 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.75248 2.12913 2.22472 1.19811 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.05022 1.26395 2.59098 0.66590 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.85788 3.75639 0.12388 3.33100 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.85788 3.75639 0.12388 3.33100 23 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.50950 3.31421 0.17687 3.11363 24 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.75732 0.57131 2.46074 1.25042 25 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.10956 2.28170 2.77349 0.23468 26 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 0.86257 2.52793 0.90835 2.35483 27 a - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.75413 0.57183 2.45952 1.25048 28 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.88182 0.86544 2.62935 0.79634 29 u - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.85788 3.75639 0.12388 3.33100 30 G - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 0.13112 3.39418 3.10331 3.11416 31 A - - , 1.38629 1.38629 1.38629 1.38629 0.25685 1.57367 3.95124 0.17622 1.82283 1.09861 0.40547 32 1.24801 0.81849 2.40356 1.70689 33 c - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 3.03404 0.16723 3.60964 2.54070 34 C - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.07908 0.76670 2.65322 1.07884 35 c - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.85788 3.75639 0.12388 3.33100 36 G - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 3.03404 0.16723 3.60964 2.54070 37 C - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 3.36320 0.20397 3.15290 2.23345 38 C - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 1.58475 1.15493 1.81689 1.14762 39 u - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.62282 1.03246 2.37691 0.73723 40 u - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 1.41539 2.64780 0.50071 2.52249 41 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.71637 2.79721 0.97561 2.60997 42 a - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 1.46911 2.67339 0.47376 2.54851 43 G - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.28358 2.96345 1.96968 2.88648 44 A - - < 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.03404 0.16723 3.60964 2.54070 45 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.03404 0.16723 3.60964 2.54070 46 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 46 1.17124 2.04340 1.33901 1.20956 47 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 47 0.13112 3.39418 3.10331 3.11416 48 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 48 3.10903 2.28163 2.77328 0.23473 49 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 49 2.78374 0.54086 2.48745 1.29892 50 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 50 2.82278 1.79275 2.59381 0.35764 51 U - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 51 2.75809 0.57119 2.46103 1.25041 52 C - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 52 0.83256 2.54284 0.93056 2.38496 53 a - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 53 1.30629 1.98247 1.03169 1.44798 54 g - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 54 2.50796 3.31201 0.17725 3.11104 55 G - - > 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 55 0.13112 3.39418 3.10331 3.11416 56 A - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 56 3.03404 0.16723 3.60964 2.54070 57 C - - , 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 57 3.11312 2.28220 2.77492 0.23430 58 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 58 0.29211 3.10663 1.87485 2.89711 59 A - - ) 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 59 3.11825 2.28292 2.77698 0.23376 60 U - - ) 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 60 0.29147 3.11032 1.87533 2.90142 61 A - - ) 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 61 0.82960 2.53247 0.94153 2.36145 62 a - - ) 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 62 2.52278 3.33335 0.17359 3.13612 63 G - - ) 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 63 1.41502 1.79270 1.97364 0.79492 64 u - - ) 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * //