INFERNAL1/a [1.1.4 | Dec 2020] NAME snoU54 ACC RF01277 DESC Small nucleolar RNA U54 STATES 205 NODES 66 CLEN 67 W 85 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 19:10:37 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 28 EFFN 3.715332 CKSUM 289634422 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.60 NC 34.50 EFP7GF -10.9242 0.71886 ECMLC 0.65019 -6.32540 2.65657 1600000 412522 0.002909 ECMGC 0.40122 -18.40229 -4.08217 1600000 125122 0.003197 ECMLI 0.63043 -4.41481 4.25430 1600000 283595 0.004231 ECMGI 0.43831 -13.06853 -0.76941 1600000 87758 0.004558 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 85 106 -7.540 -7.747 -0.035 -6.161 IL 1 1 2 1 4 1 27 89 110 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 27 88 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 26 86 106 -8.881 -0.074 -4.394 -1.848 -1.259 -2.596 1.650 D 4 2 3 5 3 0 23 84 105 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 26 86 107 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 77 - a - - MR 6 5 3 8 3 1 26 85 105 -8.821 -0.013 -7.139 0.739 -1.081 -0.375 0.120 D 7 5 3 8 3 0 21 83 104 -6.964 -1.247 -0.809 IR 8 8 3 8 3 1 25 85 106 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 76 - C - - MR 9 8 3 11 3 1 25 84 104 -8.857 -0.013 -7.174 -1.014 1.187 -2.054 -0.018 D 10 8 3 11 3 0 19 82 103 -6.652 -1.160 -0.882 IR 11 11 3 11 3 1 24 84 105 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 75 - g - - MR 12 11 3 14 3 1 25 83 103 -8.881 -0.013 -7.199 0.182 -1.578 0.936 -0.696 D 13 11 3 14 3 0 18 81 102 -6.390 -1.568 -0.620 IR 14 14 3 14 3 1 23 83 104 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 74 - A - - MR 15 14 3 17 5 1 24 82 102 -7.590 -0.028 -7.406 -7.618 -8.509 1.159 -0.915 -0.519 -0.895 D 16 14 3 17 5 0 17 80 101 -5.352 -0.707 -2.978 -4.409 -2.404 IR 17 17 3 17 5 1 21 82 103 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 2 73 G C - - MP 18 17 3 22 6 2 23 81 101 -9.363 -9.302 -0.018 -8.078 -8.358 -8.753 -5.810 -3.619 -6.098 -0.557 -6.708 -5.088 -1.809 -6.354 -4.958 3.815 -5.234 -1.379 -2.173 -5.147 -3.919 -4.960 ML 19 17 3 22 6 1 19 79 100 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 3 22 6 1 18 79 100 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 14 77 98 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 20 80 101 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 20 80 101 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 7 ] 3 72 G C - - MP 24 23 6 28 6 2 22 79 99 -9.363 -9.302 -0.018 -8.078 -8.358 -8.753 -5.810 -3.619 -6.098 -0.557 -6.708 -5.088 -1.809 -6.354 -4.958 3.815 -5.234 -1.379 -2.173 -5.147 -3.919 -4.960 ML 25 23 6 28 6 1 18 78 99 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 16 77 98 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 14 76 97 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 19 78 99 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 19 78 99 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 4 71 C G - - MP 30 29 6 34 4 2 20 77 97 -7.540 -7.747 -0.035 -6.161 -5.792 -5.801 -5.256 -1.970 -3.758 -5.502 3.805 -4.696 -5.377 -1.855 -5.473 -3.800 -0.407 -5.773 -1.526 -4.186 ML 31 29 6 34 4 1 17 77 98 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 4 1 15 76 97 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 33 29 6 34 4 0 13 75 96 -4.568 -4.250 -2.265 -0.520 IL 34 34 5 34 4 1 18 78 99 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 35 35 6 35 3 1 18 77 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 5 - g - - - ML 36 35 6 38 3 1 18 74 95 -8.521 -0.014 -7.175 -0.098 -1.397 0.877 -0.236 D 37 35 6 38 3 0 13 73 94 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 17 76 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 6 - A - - - ML 39 38 3 41 3 1 17 73 94 -8.521 -0.014 -7.175 1.514 -1.532 -1.214 -1.444 D 40 38 3 41 3 0 12 72 93 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 16 75 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 7 - U - - - ML 42 41 3 44 3 1 16 72 93 -8.521 -0.014 -7.175 -2.544 -2.365 -3.315 1.821 D 43 41 3 44 3 0 11 71 92 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 16 74 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 8 - G - - - ML 45 44 3 47 3 1 16 71 92 -8.521 -0.014 -7.175 -2.695 -4.055 1.885 -3.425 D 46 44 3 47 3 0 10 70 91 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 15 73 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 9 - A - - - ML 48 47 3 50 3 1 15 70 91 -8.521 -0.014 -7.175 1.877 -3.485 -3.014 -3.141 D 49 47 3 50 3 0 10 69 90 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 14 72 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 10 - G - - - ML 51 50 3 53 3 1 14 69 90 -8.521 -0.014 -7.175 -0.937 -2.382 1.560 -1.565 D 52 50 3 53 3 0 9 68 89 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 13 71 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 11 - G - - - ML 54 53 3 56 3 1 13 68 89 -8.521 -0.014 -7.175 -2.695 -4.055 1.885 -3.425 D 55 53 3 56 3 0 8 67 88 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 12 70 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 12 - A - - - ML 57 56 3 59 3 1 12 67 88 -8.521 -0.044 -5.184 1.877 -3.485 -3.014 -3.141 D 58 56 3 59 3 0 7 66 86 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 12 69 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 13 - g - - - ML 60 59 3 62 3 1 12 66 87 -3.759 -0.122 -7.145 -0.250 -1.013 0.735 -0.001 D 61 59 3 62 3 0 7 64 85 -6.530 -2.043 -0.422 IL 62 62 3 62 3 1 11 67 88 -1.750 -0.606 -4.450 0.000 0.000 0.000 0.000 [ MATL 18 ] 15 - A - - - ML 63 62 3 65 3 1 11 65 86 -8.491 -0.014 -7.145 1.453 -1.753 -1.098 -1.003 D 64 62 3 65 3 0 6 63 84 -6.530 -1.116 -0.922 IL 65 65 3 65 3 1 10 67 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 16 - u - - - ML 66 65 3 68 3 1 10 64 85 -5.237 -0.071 -5.530 0.286 -0.518 -0.484 0.452 D 67 65 3 68 3 0 5 62 83 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 9 65 86 -1.555 -0.720 -4.255 0.000 0.000 0.000 0.000 [ MATL 20 ] 18 - A - - - ML 69 68 3 71 3 1 9 63 83 -8.500 -0.014 -7.154 1.525 -1.624 -1.406 -1.248 D 70 68 3 71 3 0 4 61 82 -6.438 -1.951 -0.455 IL 71 71 3 71 3 1 9 64 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 19 - a - - - ML 72 71 3 74 3 1 8 62 82 -8.500 -0.041 -5.311 0.690 0.065 -1.296 -0.099 D 73 71 3 74 3 0 4 60 81 -6.438 -1.951 -0.455 IL 74 74 3 74 3 1 8 63 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 20 - u - - - ML 75 74 3 77 3 1 7 61 81 -8.473 -0.014 -7.127 -0.581 0.422 -1.358 0.679 D 76 74 3 77 3 0 3 59 80 -6.704 -0.936 -1.096 IL 77 77 3 77 3 1 7 62 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 21 - U - - - ML 78 77 3 80 3 1 7 60 80 -8.521 -0.014 -7.175 -0.507 -0.506 -1.270 1.123 D 79 77 3 80 3 0 2 58 79 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 6 61 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 22 - a - - - ML 81 80 3 83 3 1 6 59 79 -8.521 -0.014 -7.175 0.974 -1.333 -0.194 -0.387 D 82 80 3 83 3 0 1 57 78 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 5 60 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 23 - c - - - ML 84 83 3 86 3 1 5 58 78 -8.521 -0.124 -3.652 -0.418 0.468 -1.038 0.466 D 85 83 3 86 3 0 1 56 77 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 5 59 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 24 - u - - - ML 87 86 3 89 3 1 5 57 77 -8.412 -0.059 -4.753 -0.053 -0.660 -0.546 0.781 D 88 86 3 89 3 0 0 55 76 -7.165 -1.263 -0.795 IL 89 89 3 89 3 1 4 58 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 25 - g - - - ML 90 89 3 92 3 1 4 56 76 -8.429 -0.015 -7.083 -0.156 -0.668 0.609 -0.076 D 91 89 3 92 3 0 0 54 75 -7.057 -0.676 -1.449 IL 92 92 3 92 3 1 3 57 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 26 - u - - - ML 93 92 3 95 3 1 4 55 75 -8.521 -0.014 -7.175 -0.083 -0.876 -0.963 0.998 D 94 92 3 95 3 0 0 53 74 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 2 56 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 27 - G - - - ML 96 95 3 98 3 1 3 54 74 -4.219 -0.090 -7.175 -0.302 -1.717 1.330 -1.431 D 97 95 3 98 3 0 0 52 72 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 2 54 75 -1.673 -0.648 -4.373 0.000 0.000 0.000 0.000 [ MATL 30 ] 29 - U - - - ML 99 98 3 101 3 1 2 52 73 -8.521 -0.049 -5.023 -0.630 -0.833 -1.794 1.324 D 100 98 3 101 3 0 0 51 71 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 54 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 30 - U - - - ML 102 101 3 104 3 1 3 51 72 -8.486 -0.014 -7.140 -1.290 -0.961 -1.758 1.476 D 103 101 3 104 3 0 0 50 70 -6.579 -2.092 -0.405 IL 104 104 3 104 3 1 1 53 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 31 - G - - - ML 105 104 3 107 3 1 2 50 71 -8.486 -0.014 -7.140 -1.825 -3.445 1.803 -2.869 D 106 104 3 107 3 0 0 49 69 -6.579 -1.061 -0.971 IL 107 107 3 107 3 1 1 52 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 32 - A - - - ML 108 107 3 110 3 1 2 49 70 -8.521 -0.014 -7.175 1.877 -3.485 -3.014 -3.141 D 109 107 3 110 3 0 0 48 68 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 51 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 33 - A - - - ML 111 110 3 113 3 1 2 48 69 -8.521 -0.014 -7.175 1.035 -0.755 -0.728 -0.406 D 112 110 3 113 3 0 0 47 67 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 50 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 34 - U - - - ML 114 113 3 116 3 1 1 47 68 -8.521 -0.014 -7.175 -0.906 -0.574 -1.057 1.210 D 115 113 3 116 3 0 0 46 66 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 49 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 35 - U - - - ML 117 116 3 119 3 1 1 46 67 -8.521 -0.014 -7.175 -0.383 -0.670 -0.950 1.061 D 118 116 3 119 3 0 0 45 65 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 48 69 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 36 - A - - - ML 120 119 3 122 3 1 1 45 66 -8.521 -0.014 -7.175 1.309 -1.514 -0.996 -0.576 D 121 119 3 122 3 0 0 44 64 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 47 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 37 - c - - - ML 123 122 3 125 3 1 1 44 65 -4.175 -0.093 -7.175 -0.600 0.778 -1.711 0.401 D 124 122 3 125 3 0 0 42 63 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 45 65 -1.680 -0.644 -4.380 0.000 0.000 0.000 0.000 [ MATL 39 ] 39 - g - - - ML 126 125 3 128 3 1 1 43 63 -8.521 -0.014 -7.175 0.025 -0.590 0.787 -0.754 D 127 125 3 128 3 0 0 41 62 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 40 - G - - - ML 129 128 3 131 3 1 1 42 62 -8.521 -0.014 -7.175 0.096 -2.220 1.264 -1.670 D 130 128 3 131 3 0 0 40 61 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 41 - U - - - ML 132 131 3 134 3 1 1 41 61 -8.521 -0.014 -7.175 -2.544 -2.365 -3.315 1.821 D 133 131 3 134 3 0 0 39 60 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 42 - G - - - ML 135 134 3 137 3 1 1 40 60 -8.521 -0.014 -7.175 -2.695 -4.055 1.885 -3.425 D 136 134 3 137 3 0 0 38 59 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 43 - A - - - ML 138 137 3 140 3 1 1 39 59 -8.521 -0.014 -7.175 1.877 -3.485 -3.014 -3.141 D 139 137 3 140 3 0 0 37 58 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 44 - U - - - ML 141 140 3 143 3 1 1 38 58 -8.521 -0.014 -7.175 -1.414 -1.544 -1.519 1.552 D 142 140 3 143 3 0 0 36 57 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 45 - a - - - ML 144 143 3 146 3 1 1 37 57 -5.198 -0.050 -7.175 0.811 -0.665 -0.915 0.117 D 145 143 3 146 3 0 0 35 55 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 38 58 -1.558 -0.718 -4.258 0.000 0.000 0.000 0.000 [ MATL 46 ] 47 - g - - - ML 147 146 3 149 3 1 1 35 56 -8.521 -0.014 -7.175 0.098 -1.237 0.604 -0.021 D 148 146 3 149 3 0 0 34 54 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 37 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 48 - U - - - ML 150 149 3 152 3 1 1 34 55 -4.511 -0.075 -7.175 -0.610 -0.892 -1.192 1.244 D 151 149 3 152 3 0 0 32 53 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 36 57 -1.333 -0.840 -4.499 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - U - - - ML 153 152 3 155 3 1 1 32 52 -3.353 -0.160 -7.175 -1.678 -0.903 -2.431 1.569 D 154 152 3 155 3 0 0 30 50 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 33 53 -1.848 -0.558 -4.548 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - U - - - ML 156 155 3 158 3 1 1 31 51 -4.616 -0.071 -7.175 -1.062 -0.949 -1.160 1.354 D 157 155 3 158 3 0 0 29 49 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 33 53 -1.339 -0.837 -4.475 0.000 0.000 0.000 0.000 [ MATL 50 ] 56 - U - - - ML 159 158 3 161 3 1 1 29 47 -8.521 -0.014 -7.175 -0.761 -0.506 -1.799 1.274 D 160 158 3 161 3 0 0 28 47 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 57 - A - - - ML 162 161 3 164 3 1 1 27 46 -8.521 -0.014 -7.175 1.636 -2.415 -1.132 -2.011 D 163 161 3 164 3 0 0 27 46 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 58 - U - - - ML 165 164 3 167 3 1 1 26 45 -8.521 -0.014 -7.175 -2.544 -2.365 -3.315 1.821 D 166 164 3 167 3 0 0 25 44 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 59 - A - - - ML 168 167 3 170 3 1 1 25 44 -8.521 -0.014 -7.175 1.877 -3.485 -3.014 -3.141 D 169 167 3 170 3 0 0 24 43 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 60 - C - - - ML 171 170 3 173 3 1 1 24 43 -8.521 -0.014 -7.175 -3.075 1.849 -3.875 -2.245 D 172 170 3 173 3 0 0 23 42 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 61 - G - - - ML 174 173 3 176 3 1 1 23 42 -8.521 -0.014 -7.175 -2.695 -4.055 1.885 -3.425 D 175 173 3 176 3 0 0 22 41 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 62 - C - - - ML 177 176 3 179 3 1 1 22 41 -8.521 -0.014 -7.175 -3.075 1.849 -3.875 -2.245 D 178 176 3 179 3 0 0 21 40 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 63 - U - - - ML 180 179 3 182 3 1 1 21 39 -8.521 -0.014 -7.175 -2.544 -2.365 -3.315 1.821 D 181 179 3 182 3 0 0 20 39 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 64 - A - - - ML 183 182 3 185 3 1 1 20 38 -8.521 -0.014 -7.175 1.877 -3.485 -3.014 -3.141 D 184 182 3 185 3 0 0 19 38 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 65 - U - - - ML 186 185 3 188 3 1 1 18 37 -8.521 -0.014 -7.175 -2.544 -2.365 -3.315 1.821 D 187 185 3 188 3 0 0 18 37 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 22 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 66 - U - - - ML 189 188 3 191 3 1 1 17 36 -8.521 -0.014 -7.175 -2.544 -2.365 -3.315 1.821 D 190 188 3 191 3 0 0 17 35 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 67 - C - - - ML 192 191 3 194 3 1 1 16 34 -8.521 -0.014 -7.175 -3.075 1.849 -3.875 -2.245 D 193 191 3 194 3 0 0 16 34 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 68 - U - - - ML 195 194 3 197 3 1 1 14 33 -8.521 -0.014 -7.175 -2.544 -2.365 -3.315 1.821 D 196 194 3 197 3 0 0 15 33 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 69 - G - - - ML 198 197 3 200 3 1 1 13 31 -8.521 -0.014 -7.175 -2.695 -4.055 1.885 -3.425 D 199 197 3 200 3 0 0 13 32 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 70 - A - - - ML 201 200 3 203 2 1 1 1 1 * 0.000 1.877 -3.485 -3.014 -3.141 D 202 200 3 203 2 0 0 0 0 * 0.000 IL 203 203 3 203 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 65 ] - - - - - - E 204 203 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME snoU54 ACC RF01277 DESC Small nucleolar RNA U54 LENG 67 MAXL 144 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 19:10:37 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 28 EFFN 3.893066 CKSUM 289634422 STATS LOCAL MSV -7.9891 0.71886 STATS LOCAL VITERBI -8.6983 0.71886 STATS LOCAL FORWARD -3.5182 0.71886 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.29063 1.70681 1.39561 1.21815 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 0.00000 * 1 2.71013 2.27838 3.22880 0.23393 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 2 2.99636 3.84757 0.09864 3.78854 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 3 2.99723 3.84885 0.09852 3.79027 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 4 3.85875 0.12412 3.70675 2.64404 4 C - - < 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 5 1.46174 2.37550 0.76713 1.55659 5 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 6 0.32862 2.46439 2.24264 2.42086 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 7 3.20812 3.07497 3.74339 0.11687 7 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 8 3.31075 4.25851 0.07535 3.81913 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 9 0.07998 3.86178 3.53052 3.62885 9 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 10 2.05395 3.06876 0.29738 2.49460 10 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 11 3.31075 4.25851 0.07535 3.81913 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 12 0.07998 3.86178 3.53052 3.62885 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.04966 4.32130 3.34767 1.46634 0.26236 1.09861 0.40547 13 1.56985 2.10070 0.86541 1.39161 13 g - - _ 1.38629 1.38629 1.38629 1.38629 0.10850 2.41637 4.29917 0.28070 1.40755 1.53633 0.24229 14 0.37097 2.62763 2.16000 2.10077 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02754 4.29917 4.29917 1.46634 0.26236 0.56271 0.84319 15 1.18716 1.74943 1.72248 1.07173 16 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06990 3.25511 3.54267 0.58703 0.81188 1.09861 0.40547 16 0.32137 2.52989 2.38060 2.27613 18 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02736 4.30552 4.30552 1.46634 0.26236 1.42995 0.27355 17 0.90298 1.33570 2.30230 1.46259 19 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04743 4.30552 3.41657 1.46634 0.26236 1.42995 0.27355 18 1.80349 1.08486 2.34344 0.91297 20 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02791 4.28600 4.28600 1.46634 0.26236 0.44074 1.03159 19 1.74909 1.74198 2.27905 0.60054 21 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 20 0.70455 2.32918 1.51978 1.66318 22 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 21 1.68687 1.05329 2.11426 1.06308 23 c - - _ 1.38629 1.38629 1.38629 1.38629 0.10954 4.32130 2.40276 1.46634 0.26236 1.09861 0.40547 22 1.42608 1.85085 1.76519 0.84050 24 u - - _ 1.38629 1.38629 1.38629 1.38629 0.06233 4.24097 3.07831 1.46634 0.26236 0.77840 0.61460 23 1.50270 1.85431 0.95408 1.44501 25 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02885 4.25309 4.25309 1.46634 0.26236 0.28919 1.38178 24 1.44646 2.00626 2.06052 0.68772 26 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 25 1.60616 2.59557 0.45423 2.41010 27 G - - _ 1.38629 1.38629 1.38629 1.38629 0.08418 2.69636 4.32130 0.35594 1.20568 1.09861 0.40547 26 1.83718 1.97709 2.65790 0.45860 29 U - - _ 1.38629 1.38629 1.38629 1.38629 0.05330 4.32130 3.25386 1.46634 0.26236 1.09861 0.40547 27 2.31465 2.06913 2.62935 0.35271 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02763 4.29563 4.29563 1.46634 0.26236 1.59085 0.22785 28 2.68558 3.82524 0.13066 3.42680 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02763 4.29563 4.29563 1.46634 0.26236 0.52341 0.89770 29 0.07998 3.86178 3.53052 3.62885 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 30 0.66168 1.91477 1.89762 1.67816 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 31 2.03849 1.79136 2.12748 0.53802 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 32 1.66004 1.85894 2.05051 0.64367 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 33 0.47048 2.45863 2.08826 1.79671 36 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 34 1.81709 0.83597 2.59904 1.10956 37 c - - _ 1.38629 1.38629 1.38629 1.38629 0.08612 2.67024 4.32130 0.34754 1.22561 1.09861 0.40547 35 1.37515 1.79668 0.82893 1.93216 39 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 36 1.32246 2.96192 0.50038 2.58363 40 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 37 3.20812 3.07497 3.74339 0.11687 41 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 38 3.31075 4.25851 0.07535 3.81913 42 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 39 0.07998 3.86178 3.53052 3.62885 43 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 40 2.40575 2.48965 2.45662 0.29957 44 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 41 0.81849 1.85262 2.02907 1.30704 45 a - - _ 1.38629 1.38629 1.38629 1.38629 0.05407 3.23533 4.32130 0.57692 0.82468 1.09861 0.40547 42 1.32187 2.26142 0.95839 1.40383 47 g - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 43 1.82348 2.01852 2.22324 0.51512 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.07289 2.86446 4.32130 0.85853 0.55128 1.09861 0.40547 44 2.59095 2.02488 3.11303 0.28958 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.13659 2.16816 4.32130 0.21797 1.63040 1.09861 0.40547 45 2.15188 2.06018 2.20124 0.43752 53 U - - _ 1.38629 1.38629 1.38629 1.38629 0.06937 2.92369 4.32130 0.86879 0.54379 1.09861 0.40547 46 1.93139 1.74280 2.66072 0.49409 56 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 47 0.24484 3.10090 2.18040 2.82742 57 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 48 3.20812 3.07497 3.74339 0.11687 58 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 49 0.07998 3.86178 3.53052 3.62885 59 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 50 3.58617 0.09810 4.13522 3.00092 60 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 51 3.31075 4.25851 0.07535 3.81913 61 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 52 3.58617 0.09810 4.13522 3.00092 62 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 53 3.20812 3.07497 3.74339 0.11687 63 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 54 0.07998 3.86178 3.53052 3.62885 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 55 3.20812 3.07497 3.74339 0.11687 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 56 3.20812 3.07497 3.74339 0.11687 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 57 3.58617 0.09810 4.13522 3.00092 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 58 3.20812 3.07497 3.74339 0.11687 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 59 3.31075 4.25851 0.07535 3.81913 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 60 0.07998 3.86178 3.53052 3.62885 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 61 2.92841 3.87563 0.10602 3.63568 71 G - - > 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 62 3.97309 0.11800 3.70894 2.68842 72 C - - > 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 63 3.98730 0.11732 3.71590 2.69098 73 C - - > 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 64 0.57405 2.02745 1.74946 2.03086 74 A - - : 1.38629 1.38629 1.38629 1.38629 0.02692 4.32130 4.32130 1.46634 0.26236 1.09861 0.40547 65 1.26347 2.50382 0.72651 1.88413 75 g - - : 1.38629 1.38629 1.38629 1.38629 0.04609 4.32130 3.44957 1.46634 0.26236 1.09861 0.40547 66 2.11268 0.55227 2.84320 1.40566 76 C - - : 1.38629 1.38629 1.38629 1.38629 0.05601 4.30265 3.19559 1.46634 0.26236 1.47956 0.25843 67 0.86910 2.14949 1.64732 1.30357 77 a - - : 1.38629 1.38629 1.38629 1.38629 0.01421 4.26084 * 1.46634 0.26236 0.00000 * //