INFERNAL1/a [1.1.4 | Dec 2020] NAME SNORD41 ACC RF00588 DESC Small nucleolar RNA SNORD41 STATES 214 NODES 68 CLEN 70 W 91 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:49:24 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 20 EFFN 3.227539 CKSUM 2658415740 NULL 0.000 0.000 0.000 0.000 GA 41.00 TC 41.70 NC 40.70 EFP7GF -11.1181 0.71877 ECMLC 0.63397 -6.57769 2.75375 1600000 445060 0.002696 ECMGC 0.41394 -18.01024 -4.82841 1600000 93705 0.004269 ECMLI 0.60278 -4.58471 4.49392 1600000 285638 0.004201 ECMGI 0.43994 -12.87916 -1.25607 1600000 66494 0.006016 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 91 116 -7.401 -7.608 -0.039 -6.022 IL 1 1 2 1 4 1 30 94 119 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 30 93 119 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - u - - - ML 3 2 3 5 3 1 30 91 116 -8.755 -0.014 -7.073 -0.377 -0.056 -1.132 0.857 D 4 2 3 5 3 0 24 90 115 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 28 92 117 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 80 - G - - MR 6 5 3 8 5 1 30 90 115 -7.471 -0.030 -7.286 -7.498 -8.390 -0.052 -2.152 1.309 -1.592 D 7 5 3 8 5 0 22 89 114 -5.352 -0.707 -2.978 -4.409 -2.404 IR 8 8 3 8 5 1 27 90 116 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 3 ] 2 79 g c - - MP 9 8 3 13 6 2 29 89 114 -9.297 -9.237 -0.018 -8.013 -8.293 -8.688 -3.117 -2.380 -3.128 1.106 -3.398 -3.834 1.005 -3.529 -3.332 2.718 -3.742 0.744 0.532 -3.122 -0.535 -1.030 ML 10 8 3 13 6 1 24 87 113 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 11 8 3 13 6 1 23 87 113 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 12 8 3 13 6 0 19 85 110 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 13 13 5 13 6 1 26 88 114 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 14 14 6 14 5 1 26 88 114 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 78 G C - - MP 15 14 6 19 6 2 28 87 112 -9.297 -9.237 -0.018 -8.013 -8.293 -8.688 -4.187 -2.909 -4.101 0.610 -4.428 -4.496 0.188 -4.456 -4.176 3.396 -4.490 -0.594 -0.224 -3.964 -0.685 -3.035 ML 16 14 6 19 6 1 23 85 111 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 6 19 6 1 22 85 111 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 6 19 6 0 19 83 108 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 25 86 112 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 25 86 112 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 77 G C - - MP 21 20 6 25 6 2 26 85 110 -9.297 -9.237 -0.018 -8.013 -8.293 -8.688 -5.564 -3.496 -5.791 -0.376 -6.376 -5.000 -1.537 -6.056 -4.824 3.786 -5.111 -1.239 -1.904 -4.995 -3.627 -4.656 ML 22 20 6 25 6 1 22 84 109 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 6 1 21 83 109 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 24 20 6 25 6 0 18 82 107 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 25 25 5 25 6 1 24 85 110 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 26 26 6 26 5 1 24 84 110 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 76 A U - - MP 27 26 6 31 4 2 24 83 108 -7.401 -7.608 -0.039 -6.022 -4.607 -3.459 -4.532 3.680 -5.327 -6.497 -0.970 -4.517 -4.430 0.191 -5.016 -0.827 -1.381 -5.521 -2.907 -3.345 ML 28 26 6 31 4 1 21 83 108 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 29 26 6 31 4 1 19 82 108 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 30 26 6 31 4 0 18 81 106 -4.568 -4.250 -2.265 -0.520 IL 31 31 5 31 4 1 23 84 109 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 32 32 6 32 3 1 23 83 109 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - A - - - ML 33 32 6 35 3 1 23 81 106 -8.389 -0.015 -7.043 1.251 -1.404 -0.888 -0.509 D 34 32 6 35 3 0 17 79 105 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 22 82 108 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - G - - - ML 36 35 3 38 3 1 22 80 105 -8.389 -0.015 -7.043 -0.703 -2.560 1.569 -2.005 D 37 35 3 38 3 0 17 78 104 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 21 81 107 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 39 38 3 41 3 1 21 79 104 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 40 38 3 41 3 0 16 77 103 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 80 106 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 42 41 3 44 3 1 20 78 103 -8.389 -0.015 -7.043 -2.450 -3.784 1.861 -3.164 D 43 41 3 44 3 0 15 76 102 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 20 79 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - - - ML 45 44 3 47 3 1 19 77 102 -8.389 -0.015 -7.043 1.852 -3.228 -2.778 -2.859 D 46 44 3 47 3 0 14 75 101 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 78 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 48 47 3 50 3 1 19 76 101 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 49 47 3 50 3 0 14 74 100 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 18 77 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 51 50 3 53 3 1 18 75 100 -8.389 -0.015 -7.043 -2.450 -3.784 1.861 -3.164 D 52 50 3 53 3 0 13 73 99 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 17 76 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 54 53 3 56 3 1 17 74 99 -8.389 -0.015 -7.043 1.480 -1.793 -1.100 -1.134 D 55 53 3 56 3 0 12 72 98 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 16 75 101 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - c - - - ML 57 56 3 59 3 1 16 73 98 -8.389 -0.015 -7.043 -0.467 0.749 -1.285 0.246 D 58 56 3 59 3 0 12 71 97 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 16 74 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 60 59 3 62 3 1 15 72 97 -8.389 -0.106 -3.885 1.372 -1.199 -0.974 -1.098 D 61 59 3 62 3 0 11 70 96 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 15 73 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - c - - - ML 63 62 3 65 3 1 15 71 96 -8.300 -0.016 -6.954 -0.228 0.718 -1.055 0.028 D 64 62 3 65 3 0 10 69 95 -6.978 -0.725 -1.370 IL 65 65 3 65 3 1 14 72 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - u - - - ML 66 65 3 68 3 1 14 70 95 -3.272 -0.170 -7.043 -0.123 0.387 -1.110 0.391 D 67 65 3 68 3 0 9 66 92 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 14 72 98 -1.040 -1.050 -5.022 0.000 0.000 0.000 0.000 [ MATL 19 ] 22 - u - - - ML 69 68 3 71 3 1 13 65 85 -8.389 -0.015 -7.043 -1.090 0.366 -1.892 0.980 D 70 68 3 71 3 0 8 64 84 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 12 67 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 23 - g - - - ML 72 71 3 74 3 1 13 64 84 -8.389 -0.015 -7.043 0.081 -0.896 0.376 0.146 D 73 71 3 74 3 0 7 63 83 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 12 66 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 24 - U - - - ML 75 74 3 77 3 1 12 63 83 -8.389 -0.015 -7.043 -1.079 -1.074 -1.303 1.404 D 76 74 3 77 3 0 7 62 82 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 11 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 25 - G - - - ML 78 77 3 80 3 1 11 62 82 -8.389 -0.015 -7.043 -0.296 -1.888 1.298 -1.130 D 79 77 3 80 3 0 6 61 81 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 10 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 26 - A - - - ML 81 80 3 83 3 1 10 61 81 -8.389 -0.015 -7.043 1.610 -1.509 -1.915 -1.592 D 82 80 3 83 3 0 6 60 80 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 9 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 27 - C - - - ML 84 83 3 86 3 1 9 60 80 -8.389 -0.081 -4.271 -0.985 1.164 -1.086 -0.353 D 85 83 3 86 3 0 5 59 79 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 9 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 28 - u - - - ML 87 86 3 89 3 1 9 59 79 -8.324 -0.016 -6.978 -0.507 0.194 -0.620 0.586 D 88 86 3 89 3 0 4 58 78 -6.805 -0.850 -1.197 IL 89 89 3 89 3 1 8 61 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 29 - g - - - ML 90 89 3 92 3 1 8 58 78 -8.389 -0.015 -7.043 -0.258 0.010 0.283 -0.088 D 91 89 3 92 3 0 3 57 77 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 7 60 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 30 - u - - - ML 93 92 3 95 3 1 7 57 77 -8.389 -0.015 -7.043 -1.087 0.693 -1.914 0.720 D 94 92 3 95 3 0 2 56 76 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 6 59 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 31 - U - - - ML 96 95 3 98 3 1 6 56 76 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 97 95 3 98 3 0 2 54 75 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 6 58 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 32 - G - - - ML 99 98 3 101 3 1 5 55 75 -8.389 -0.057 -4.795 -2.450 -3.784 1.861 -3.164 D 100 98 3 101 3 0 1 53 73 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 5 57 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 33 - A - - - ML 102 101 3 104 3 1 4 54 74 -4.049 -0.102 -7.001 1.843 -3.146 -2.703 -2.768 D 103 101 3 104 3 0 1 52 72 -6.610 -1.028 -1.002 IL 104 104 3 104 3 1 4 55 75 -1.673 -0.648 -4.373 0.000 0.000 0.000 0.000 [ MATL 31 ] 35 - c - - - ML 105 104 3 107 3 1 3 53 72 -8.389 -0.015 -7.043 -1.173 0.978 -2.024 0.422 D 106 104 3 107 3 0 0 51 71 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 3 54 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 36 - a - - - ML 108 107 3 110 3 1 2 52 71 -8.389 -0.110 -3.832 0.796 -1.078 0.274 -0.783 D 109 107 3 110 3 0 0 50 70 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 2 54 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - U - - - ML 111 110 3 113 3 1 2 51 70 -8.296 -0.153 -3.355 -0.465 -0.650 -1.215 1.142 D 112 110 3 113 3 0 0 49 69 -7.004 -0.708 -1.395 IL 113 113 3 113 3 1 2 53 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 38 - c - - - ML 114 113 3 116 3 1 3 50 69 -8.262 -0.017 -6.916 -0.481 0.411 0.157 -0.254 D 115 113 3 116 3 0 0 48 68 -7.205 -0.594 -1.596 IL 116 116 3 116 3 1 1 52 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 39 - a - - - ML 117 116 3 119 3 1 2 49 68 -8.389 -0.015 -7.043 0.406 -0.971 0.350 -0.167 D 118 116 3 119 3 0 0 47 67 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 50 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 40 - C - - - ML 120 119 3 122 3 1 2 48 67 -8.389 -0.015 -7.043 -0.371 1.034 -1.714 -0.194 D 121 119 3 122 3 0 0 46 66 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 49 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 41 - a - - - ML 123 122 3 125 3 1 2 46 66 -8.389 -0.015 -7.043 0.699 -0.631 -0.189 -0.229 D 124 122 3 125 3 0 0 45 65 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 48 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 42 - C - - - ML 126 125 3 128 3 1 1 45 65 -8.389 -0.015 -7.043 -0.634 1.365 -2.138 -0.854 D 127 125 3 128 3 0 0 44 64 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 47 67 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 43 - U - - - ML 129 128 3 131 3 1 1 44 64 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 130 128 3 131 3 0 0 43 63 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 46 66 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 44 - G - - - ML 132 131 3 134 3 1 1 43 63 -8.389 -0.015 -7.043 -2.450 -3.784 1.861 -3.164 D 133 131 3 134 3 0 0 42 62 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 45 65 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 45 - A - - - ML 135 134 3 137 3 1 1 42 62 -8.389 -0.015 -7.043 1.852 -3.228 -2.778 -2.859 D 136 134 3 137 3 0 0 41 61 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 44 64 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 46 - U - - - ML 138 137 3 140 3 1 1 41 61 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 139 137 3 140 3 0 0 40 60 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 43 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 47 - U - - - ML 141 140 3 143 3 1 1 40 60 -8.389 -0.015 -7.043 -0.803 -0.465 -1.060 1.153 D 142 140 3 143 3 0 0 39 59 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 42 62 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 48 - U - - - ML 144 143 3 146 3 1 1 39 59 -8.389 -0.015 -7.043 -0.849 -0.888 -1.489 1.349 D 145 143 3 146 3 0 0 38 58 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 41 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 49 - C - - - ML 147 146 3 149 3 1 1 38 58 -8.389 -0.015 -7.043 -0.947 1.173 -1.964 -0.045 D 148 146 3 149 3 0 0 37 56 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 40 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 50 - U - - - ML 150 149 3 152 3 1 1 37 57 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 151 149 3 152 3 0 0 36 55 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 39 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 51 - c - - - ML 153 152 3 155 3 1 1 36 56 -8.389 -0.015 -7.043 -0.429 0.630 -0.162 -0.292 D 154 152 3 155 3 0 0 35 55 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 38 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 52 - u - - - ML 156 155 3 158 3 1 1 35 54 -8.389 -0.100 -3.968 0.049 -0.711 -0.564 0.747 D 157 155 3 158 3 0 0 34 54 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 37 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 53 - c - - - ML 159 158 3 161 3 1 1 34 53 -2.910 -0.219 -6.959 -0.236 0.590 -1.086 0.231 D 160 158 3 161 3 0 0 34 54 -1.253 -2.452 -1.330 IL 161 161 3 161 3 1 1 35 54 -1.413 -0.750 -5.072 0.000 0.000 0.000 0.000 [ MATL 50 ] 58 - G - - - ML 162 161 3 164 3 1 1 31 50 -8.389 -0.015 -7.043 -1.569 -3.175 1.760 -2.602 D 163 161 3 164 3 0 0 30 49 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 59 - U - - - ML 165 164 3 167 3 1 1 30 49 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 166 164 3 167 3 0 0 29 48 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 60 - A - - - ML 168 167 3 170 3 1 1 29 48 -8.389 -0.015 -7.043 1.852 -3.228 -2.778 -2.859 D 169 167 3 170 3 0 0 28 47 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 32 51 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 61 - U - - - ML 171 170 3 173 3 1 1 28 47 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 172 170 3 173 3 0 0 27 46 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 31 50 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 62 - U - - - ML 174 173 3 176 3 1 1 27 46 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 175 173 3 176 3 0 0 26 45 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 29 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 63 - C - - - ML 177 176 3 179 3 1 1 26 44 -8.389 -0.015 -7.043 -1.389 1.435 -1.701 -0.723 D 178 176 3 179 3 0 0 25 44 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 64 - G - - - ML 180 179 3 182 3 1 1 25 43 -8.389 -0.015 -7.043 -1.164 -2.883 1.686 -2.322 D 181 179 3 182 3 0 0 24 43 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 65 - U - - - ML 183 182 3 185 3 1 1 24 42 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 184 182 3 185 3 0 0 23 41 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 26 45 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 66 - A - - - ML 186 185 3 188 3 1 1 22 41 -8.389 -0.015 -7.043 1.852 -3.228 -2.778 -2.859 D 187 185 3 188 3 0 0 22 40 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 67 - C - - - ML 189 188 3 191 3 1 1 21 40 -8.389 -0.015 -7.043 -2.774 1.815 -3.593 -1.992 D 190 188 3 191 3 0 0 20 39 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 68 - U - - - ML 192 191 3 194 3 1 1 20 39 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 193 191 3 194 3 0 0 19 38 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 69 - G - - - ML 195 194 3 197 3 1 1 19 37 -4.853 -0.062 -7.043 -2.450 -3.784 1.861 -3.164 D 196 194 3 197 3 0 0 17 36 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 21 39 -1.577 -0.705 -4.277 0.000 0.000 0.000 0.000 [ MATL 62 ] 71 - G - - - ML 198 197 3 200 3 1 1 17 36 -8.389 -0.015 -7.043 -0.773 -1.826 1.341 -0.736 D 199 197 3 200 3 0 0 17 35 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 72 - C - - - ML 201 200 3 203 3 1 1 16 34 -8.389 -0.015 -7.043 -2.774 1.815 -3.593 -1.992 D 202 200 3 203 3 0 0 16 34 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 73 - U - - - ML 204 203 3 206 3 1 1 14 33 -8.389 -0.015 -7.043 -2.295 -2.155 -3.059 1.787 D 205 203 3 206 3 0 0 15 33 -6.174 -1.687 -0.566 IL 206 206 3 206 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 74 - G - - - ML 207 206 3 209 3 1 1 13 31 -8.389 -0.015 -7.043 -2.450 -3.784 1.861 -3.164 D 208 206 3 209 3 0 0 13 32 -6.174 -1.687 -0.566 IL 209 209 3 209 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 75 - A - - - ML 210 209 3 212 2 1 1 1 1 * 0.000 1.852 -3.228 -2.778 -2.859 D 211 209 3 212 2 0 0 0 0 * 0.000 IL 212 212 3 212 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 67 ] - - - - - - E 213 212 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SNORD41 ACC RF00588 DESC Small nucleolar RNA SNORD41 LENG 70 MAXL 151 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:49:24 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 20 EFFN 3.540039 CKSUM 2658415740 STATS LOCAL MSV -8.4912 0.71877 STATS LOCAL VITERBI -9.1356 0.71877 STATS LOCAL FORWARD -3.5090 0.71877 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.44939 1.57848 1.39564 1.16692 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 0.00000 * 1 1.66510 1.41959 2.19092 0.78263 1 u - - : 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 2 1.83705 1.98690 0.62498 1.78187 2 G - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 3 2.23278 2.59404 0.33211 2.29613 3 G - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 4 2.91730 3.73713 0.10890 3.67773 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 5 0.18578 3.41596 2.29822 3.31702 5 A - - < 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 6 0.50281 2.39991 2.02168 1.76018 6 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 7 1.90513 3.24068 0.28120 2.86154 7 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 8 3.08982 2.97495 3.62238 0.13157 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 9 3.19639 4.13285 0.08523 3.69901 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 10 0.09081 3.74046 3.41880 3.49602 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 11 3.08982 2.97495 3.62238 0.13157 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 12 3.19639 4.13285 0.08523 3.69901 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 13 0.34394 2.68188 2.17400 2.21758 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 14 1.73562 0.84520 2.30696 1.22189 14 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 15 0.41707 2.24042 2.08556 2.20391 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09821 4.21441 2.54136 1.46634 0.26236 1.09861 0.40547 16 1.56037 0.86689 2.13822 1.37904 16 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03209 4.14829 4.14829 1.46634 0.26236 0.31871 1.29861 17 1.48201 1.10172 2.17762 1.11716 17 c - - _ 1.38629 1.38629 1.38629 1.38629 0.14685 2.10545 4.21441 1.03205 0.44049 1.09861 0.40547 18 2.20107 1.11843 2.76210 0.69442 22 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 19 1.33668 2.02709 1.10973 1.28766 23 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 20 2.19631 2.17205 2.31883 0.39089 24 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 21 1.61221 2.74929 0.46624 2.21437 25 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 22 0.25324 2.46252 2.78500 2.56693 26 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 23 2.12816 0.55188 2.15982 1.66216 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.07973 4.21441 2.78296 1.46634 0.26236 1.09861 0.40547 24 1.76626 1.23820 1.81901 0.97568 28 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03151 4.16619 4.16619 1.46634 0.26236 0.39064 1.12894 25 1.58605 1.36907 1.17342 1.46267 29 g - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 26 2.19850 0.88573 2.77859 0.88070 30 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 27 3.08982 2.97495 3.62238 0.13157 31 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 28 3.19639 4.13285 0.08523 3.69901 32 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06169 4.21441 3.10004 1.46634 0.26236 1.09861 0.40547 29 0.09653 3.68238 3.36556 3.43219 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.09610 2.57196 4.18368 0.36026 1.19565 0.50455 0.92578 30 2.26162 0.68524 2.85938 1.09498 35 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 31 0.82415 2.15583 1.18307 1.97152 36 a - - _ 1.38629 1.38629 1.38629 1.38629 0.10116 4.21441 2.50801 1.46634 0.26236 1.09861 0.40547 32 1.73124 1.85444 2.25438 0.57722 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.13639 4.14544 2.19230 1.46634 0.26236 0.30971 1.32297 33 1.75409 1.08151 1.26136 1.58677 38 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03300 4.12072 4.12072 1.46634 0.26236 0.24971 1.50970 34 1.10407 2.07889 1.12944 1.51323 39 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 35 1.66443 0.64528 2.63017 1.54123 40 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 36 0.89340 1.82937 1.51501 1.55866 41 a - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 37 1.86071 0.41195 2.95407 2.04056 42 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 38 3.08982 2.97495 3.62238 0.13157 43 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 39 3.19639 4.13285 0.08523 3.69901 44 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 40 0.09081 3.74046 3.41880 3.49602 45 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 41 3.08982 2.97495 3.62238 0.13157 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 42 1.98672 1.71890 2.13948 0.56938 47 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 43 2.01852 2.03250 2.45727 0.43006 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 44 2.08854 0.54943 2.81180 1.43230 49 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 45 3.08982 2.97495 3.62238 0.13157 50 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 46 1.71300 0.92800 1.49055 1.61403 51 c - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 47 1.35506 1.89547 1.77933 0.86022 52 u - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 48 1.56541 0.95696 2.16089 1.23197 53 c - - _ 1.38629 1.38629 1.38629 1.38629 0.17440 1.92925 4.21441 0.72424 0.66299 1.09861 0.40547 49 2.53711 3.68550 0.15245 3.29104 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 50 3.08982 2.97495 3.62238 0.13157 59 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 51 0.09081 3.74046 3.41880 3.49602 60 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 52 3.08982 2.97495 3.62238 0.13157 61 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 53 3.08982 2.97495 3.62238 0.13157 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 54 2.43051 0.36426 2.61102 1.93908 63 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 55 2.24087 3.47344 0.20202 3.08906 64 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 56 3.08982 2.97495 3.62238 0.13157 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 57 0.09081 3.74046 3.41880 3.49602 66 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 58 3.44628 0.11218 4.00602 2.88157 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 59 3.08982 2.97495 3.62238 0.13157 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 60 3.19639 4.13285 0.08523 3.69901 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.06530 3.02753 4.21441 0.52781 0.89135 1.09861 0.40547 61 1.96405 2.70935 0.43526 1.92390 71 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 62 3.44628 0.11218 4.00602 2.88157 72 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 63 3.08982 2.97495 3.62238 0.13157 73 U - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 64 3.19639 4.13285 0.08523 3.69901 74 G - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 65 0.09081 3.74046 3.41880 3.49602 75 A - - _ 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 66 3.53772 2.65057 3.22332 0.15026 76 U - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 67 3.85963 0.13067 3.58712 2.60728 77 C - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 68 2.80630 0.37587 2.19306 1.95685 78 C - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 69 2.24161 0.81888 1.73679 1.28482 79 c - - > 1.38629 1.38629 1.38629 1.38629 0.03001 4.21441 4.21441 1.46634 0.26236 1.09861 0.40547 70 1.43289 2.94857 0.45864 2.56628 80 G - - : 1.38629 1.38629 1.38629 1.38629 0.01512 4.19952 * 1.46634 0.26236 0.00000 * //