INFERNAL1/a [1.1.4 | Dec 2020] NAME HIV_FE ACC RF00480 DESC HIV Ribosomal frameshift signal STATES 160 NODES 44 CLEN 52 W 66 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:41:18 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 145 EFFN 5.482635 CKSUM 53117362 NULL 0.000 0.000 0.000 0.000 GA 42.00 TC 42.00 NC 41.90 EFP7GF -14.2866 0.71930 ECMLC 0.48964 -10.43307 2.89530 1600000 819307 0.001465 ECMGC 0.43677 -16.06755 -1.12768 1600000 272865 0.001466 ECMLI 0.44781 -9.87817 4.03594 1600000 609843 0.001968 ECMGI 0.45402 -12.53855 1.10378 1600000 195910 0.002042 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 66 85 -7.955 -8.162 -0.026 -6.576 IL 1 1 2 1 4 1 8 71 90 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 8 70 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - U - - - ML 3 2 3 5 3 1 9 66 85 -8.918 -0.011 -7.572 -1.944 -2.059 -2.621 1.739 D 4 2 3 5 3 0 2 65 84 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 7 69 88 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 1 8 65 84 -8.918 -0.016 -6.848 -3.250 -2.971 -4.034 1.890 D 7 5 3 8 3 0 1 64 83 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 6 68 87 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 3 ] 3 - U - - - ML 9 8 3 11 3 1 7 64 83 -8.913 -0.011 -7.567 -2.787 -2.296 -3.543 1.834 D 10 8 3 11 3 0 0 63 82 -6.260 -1.773 -0.526 IL 11 11 3 11 3 1 5 67 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 4 ] 4 - U - - - ML 12 11 3 14 3 1 7 63 82 -8.913 -0.022 -6.297 -3.140 -2.823 -3.916 1.879 D 13 11 3 14 3 0 0 62 81 -6.260 -1.773 -0.526 IL 14 14 3 14 3 1 5 65 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 5 ] 5 - U - - - ML 15 14 3 17 3 1 6 62 81 -8.902 -0.011 -7.556 -1.754 -1.826 -2.532 1.700 D 16 14 3 17 3 0 0 61 80 -6.430 -1.943 -0.457 IL 17 17 3 17 3 1 4 64 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 6 ] 6 - U - - - ML 18 17 3 20 3 1 6 61 80 -8.902 -0.011 -7.556 -2.728 -2.211 -3.481 1.825 D 19 17 3 20 3 0 0 60 79 -6.430 -1.242 -0.822 IL 20 20 3 20 3 1 3 63 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 7 - A - - - ML 21 20 3 23 3 1 5 60 79 -8.918 -0.011 -7.572 1.892 -3.792 -2.948 -3.535 D 22 20 3 23 3 0 0 59 78 -6.174 -1.687 -0.566 IL 23 23 3 23 3 1 3 62 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 8 - G - - - ML 24 23 3 26 3 1 5 59 78 -8.918 -0.011 -7.572 -0.615 -1.802 1.475 -1.829 D 25 23 3 26 3 0 0 58 77 -6.174 -1.687 -0.566 IL 26 26 3 26 3 1 2 61 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 9 - G - - - ML 27 26 3 29 3 1 4 58 76 -8.918 -0.011 -7.572 -1.556 -3.644 1.792 -3.108 D 28 26 3 29 3 0 0 57 76 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 2 60 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 30 29 3 32 3 1 3 57 75 -8.918 -0.011 -7.572 -1.233 -2.842 1.707 -2.554 D 31 29 3 32 3 0 0 56 75 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 1 59 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 11 - A - - - ML 33 32 3 35 3 1 3 55 74 -8.918 -0.011 -7.572 1.927 -4.207 -3.688 -3.915 D 34 32 3 35 3 0 0 55 74 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 1 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 12 - A - - - ML 36 35 3 38 3 1 3 54 73 -8.918 -0.011 -7.572 1.522 -2.651 -0.399 -2.251 D 37 35 3 38 3 0 0 53 72 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 1 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 13 - A - - - ML 39 38 3 41 3 1 2 53 72 -8.918 -0.011 -7.572 1.448 -2.496 -0.243 -2.008 D 40 38 3 41 3 0 0 52 71 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 1 56 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 14 - A - - - ML 42 41 3 44 3 1 2 52 71 -8.918 -0.011 -7.572 1.377 -1.215 -1.112 -0.972 D 43 41 3 44 3 0 0 51 70 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 1 55 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 15 - U - - - ML 45 44 3 47 3 1 1 51 70 -9.262 -0.010 -7.580 -1.918 -1.628 -2.196 1.675 D 46 44 3 47 3 0 0 50 69 -5.620 -0.734 -1.403 IL 47 47 3 47 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 16 ] - 52 - U - - MR 48 47 3 50 3 1 1 50 69 -9.262 -0.010 -7.580 -1.354 -0.643 -1.835 1.427 D 49 47 3 50 3 0 0 49 67 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 51 70 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 17 ] - 51 - U - - MR 51 50 3 53 3 1 1 49 68 -9.262 -0.010 -7.580 -1.261 -0.280 -1.961 1.323 D 52 50 3 53 3 0 0 48 66 -6.390 -1.568 -0.620 IR 53 53 3 53 3 1 1 50 69 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 18 ] - 50 - C - - MR 54 53 3 56 3 1 1 48 67 -9.262 -0.010 -7.580 -1.073 1.424 -2.099 -0.716 D 55 53 3 56 3 0 0 47 65 -6.390 -1.568 -0.620 IR 56 56 3 56 3 1 1 49 68 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 19 ] - 49 - U - - MR 57 56 3 59 3 1 1 47 66 -9.262 -0.010 -7.580 -1.657 0.547 -2.511 1.033 D 58 56 3 59 3 0 0 46 64 -6.390 -1.568 -0.620 IR 59 59 3 59 3 1 1 48 67 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 20 ] - 48 - U - - MR 60 59 3 62 3 1 1 46 65 -9.262 -0.024 -6.094 -3.250 -2.971 -4.034 1.890 D 61 59 3 62 3 0 0 44 63 -6.390 -1.568 -0.620 IR 62 62 3 62 3 1 1 47 66 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 21 ] - 47 - U - - MR 63 62 3 65 3 1 1 45 64 -9.248 -0.014 -6.935 -3.226 -2.950 -4.009 1.888 D 64 62 3 65 3 0 0 43 62 -6.588 -1.766 -0.524 IR 65 65 3 65 3 1 1 46 65 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 22 ] - 46 - U - - MR 66 65 3 68 3 1 1 44 63 -9.244 -0.010 -7.562 -1.762 0.041 -2.569 1.326 D 67 65 3 68 3 0 0 42 61 -6.643 -1.821 -0.500 IR 68 68 3 68 3 1 1 45 64 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 23 ] - 45 - A - - MR 69 68 3 71 3 1 1 43 62 -9.244 -0.018 -6.510 1.925 -4.175 -3.658 -3.882 D 70 68 3 71 3 0 0 42 60 -6.643 -1.171 -0.873 IR 71 71 3 71 3 1 1 44 63 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 24 ] - 44 - A - - MR 72 71 3 74 3 1 1 42 61 -9.254 -0.010 -7.572 1.823 -2.632 -2.708 -2.772 D 73 71 3 74 3 0 0 41 59 -6.511 -1.356 -0.741 IR 74 74 3 74 3 1 1 43 62 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 25 ] - 43 - G - - MR 75 74 3 77 3 1 1 41 60 -9.262 -0.010 -7.580 0.077 -1.430 1.139 -1.431 D 76 74 3 77 3 0 0 40 58 -6.390 -1.568 -0.620 IR 77 77 3 77 3 1 1 42 61 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 26 ] - 42 - G - - MR 78 77 3 80 5 1 1 40 59 -7.956 -0.021 -7.771 -7.983 -8.875 -1.101 -2.603 1.653 -2.154 D 79 77 3 80 5 0 0 39 58 -5.352 -0.707 -2.978 -4.409 -2.404 IR 80 80 3 80 5 1 1 40 59 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 27 ] 16 41 c g - - MP 81 80 3 85 6 2 2 39 58 -9.577 -9.517 -0.015 -8.293 -8.573 -8.968 -2.321 -2.478 -1.813 0.652 -0.943 -3.327 2.265 -2.704 -2.533 0.596 -1.837 -0.963 1.273 -2.639 1.494 -1.663 ML 82 80 3 85 6 1 1 38 56 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 83 80 3 85 6 1 1 38 56 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 84 80 3 85 6 0 0 35 54 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 85 85 5 85 6 1 1 39 58 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 86 86 6 86 5 1 1 38 57 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 28 ] 17 40 u a - - MP 87 86 6 91 6 2 2 37 56 -9.577 -9.517 -0.015 -8.293 -8.573 -8.968 -2.425 -2.640 -2.657 0.479 -1.802 -3.501 1.171 -2.887 -2.702 0.429 -3.265 -1.130 2.881 -0.985 0.029 -1.369 ML 88 86 6 91 6 1 1 36 54 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 89 86 6 91 6 1 1 36 54 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 90 86 6 91 6 0 0 33 52 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 91 91 5 91 6 1 1 37 56 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 92 92 6 92 5 1 1 36 55 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 29 ] 18 39 G C - - MP 93 92 6 97 6 2 2 35 54 -9.577 -9.517 -0.015 -8.293 -8.573 -8.968 -4.559 -1.932 -4.477 0.380 -5.416 -4.688 -0.610 -5.096 -2.962 3.569 -4.814 -0.776 -0.881 -2.387 -2.612 -3.455 ML 94 92 6 97 6 1 1 34 52 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 95 92 6 97 6 1 1 34 52 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 96 92 6 97 6 0 0 31 50 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 97 97 5 97 6 1 1 35 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 98 98 6 98 5 1 1 34 53 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 30 ] 19 38 G C - - MP 99 98 6 103 6 2 2 33 52 -9.577 -9.517 -0.015 -8.293 -8.573 -8.968 -6.066 -3.822 -6.381 -0.766 -7.338 -5.312 -2.269 -6.728 -5.198 3.817 -5.470 -0.623 -2.553 -5.368 -4.400 -5.246 ML 100 98 6 103 6 1 1 32 50 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 101 98 6 103 6 1 1 32 50 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 102 98 6 103 6 0 0 29 48 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 103 103 5 103 6 1 1 33 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 104 104 6 104 5 1 1 32 51 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 31 ] 20 37 C G - - MP 105 104 6 109 6 2 2 31 50 -9.577 -9.517 -0.015 -8.293 -8.573 -8.968 -5.549 -5.636 -5.052 -1.752 -3.529 -5.321 3.685 -4.409 -5.118 -1.627 -5.308 -3.690 0.216 -5.497 -0.149 -3.914 ML 106 104 6 109 6 1 1 30 48 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 107 104 6 109 6 1 1 30 48 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 108 104 6 109 6 0 0 27 46 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 109 109 5 109 6 1 1 31 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 110 110 6 110 5 1 1 30 49 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 32 ] 21 36 C G - - MP 111 110 6 115 6 2 2 29 48 -9.577 -9.517 -0.015 -8.293 -8.573 -8.968 -7.296 -7.355 -6.639 -3.638 -4.475 -3.488 3.934 -6.613 -7.108 -3.509 -6.715 -5.460 -2.284 -7.395 -3.148 -5.969 ML 112 110 6 115 6 1 1 28 46 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 113 110 6 115 6 1 1 28 46 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 114 110 6 115 6 0 0 25 44 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 115 115 5 115 6 1 1 29 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 116 116 6 116 5 1 1 28 47 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 33 ] 22 35 U A - - MP 117 116 6 121 6 2 2 27 46 -9.577 -9.517 -0.015 -8.293 -8.573 -8.968 -5.638 -2.879 -5.621 -1.938 -4.537 -6.296 -0.445 -5.396 -5.592 -1.761 -6.072 -3.631 3.809 -5.813 -2.011 -4.095 ML 118 116 6 121 6 1 1 26 44 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 119 116 6 121 6 1 1 26 44 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 120 116 6 121 6 0 0 23 42 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 121 121 5 121 6 1 1 27 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 122 122 6 122 5 1 1 26 45 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 34 ] 23 34 u a - - MP 123 122 6 127 6 2 2 25 44 -9.577 -9.517 -0.015 -8.293 -8.573 -8.968 -3.335 -3.366 -3.415 0.179 -2.488 -4.192 1.659 -3.348 -3.417 0.441 -3.929 -1.506 2.229 -2.478 2.058 -2.398 ML 124 122 6 127 6 1 1 24 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 125 122 6 127 6 1 1 24 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 126 122 6 127 6 0 0 22 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 127 127 5 127 6 1 1 25 44 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 128 128 6 128 5 1 1 25 43 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 35 ] 24 33 C G - - MP 129 128 6 133 6 2 2 23 42 -9.577 -9.517 -0.015 -8.293 -8.573 -8.968 -5.055 -5.060 -4.938 -1.349 -1.887 -5.496 3.702 -4.722 -5.005 -1.216 -2.785 -3.093 0.002 -5.246 -1.499 -3.906 ML 130 128 6 133 6 1 1 23 42 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 131 128 6 133 6 1 1 23 42 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 132 128 6 133 6 0 0 21 40 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 133 133 5 133 6 1 1 23 42 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 134 134 6 134 5 1 1 23 41 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 36 ] 25 32 C G - - MP 135 134 6 139 4 2 2 21 40 -7.955 -8.162 -0.026 -6.576 -6.322 -6.346 -5.994 -2.649 -2.670 -6.344 3.881 -5.904 -6.242 -2.522 -3.762 -4.411 -1.529 -6.492 -2.402 -5.137 ML 136 134 6 139 4 1 1 23 41 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 137 134 6 139 4 1 1 22 41 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 138 134 6 139 4 0 0 21 40 -4.568 -4.250 -2.265 -0.520 IL 139 139 5 139 4 1 1 24 43 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 140 140 6 140 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 26 - c - - - ML 141 140 6 143 3 1 1 18 37 -8.918 -0.011 -7.572 0.329 0.629 -1.544 -0.227 D 142 140 6 143 3 0 0 18 36 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 27 - A - - - ML 144 143 3 146 3 1 1 17 35 -8.918 -0.011 -7.572 1.028 -1.087 -0.253 -0.621 D 145 143 3 146 3 0 0 17 35 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 28 - C - - - ML 147 146 3 149 3 1 1 16 34 -8.918 -0.011 -7.572 -2.440 1.756 -2.870 -1.729 D 148 146 3 149 3 0 0 16 34 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 29 - A - - - ML 150 149 3 152 3 1 1 14 33 -8.918 -0.011 -7.572 1.739 -2.461 -1.943 -2.178 D 151 149 3 152 3 0 0 15 33 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 30 - A - - - ML 153 152 3 155 3 1 1 12 31 -8.918 -0.011 -7.572 1.528 -2.012 -0.908 -1.575 D 154 152 3 155 3 0 0 13 32 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 31 - G - - - ML 156 155 3 158 2 1 1 1 1 * 0.000 -0.293 -1.696 1.293 -1.233 D 157 155 3 158 2 0 0 0 0 * 0.000 IL 158 158 3 158 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 43 ] - - - - - - E 159 158 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME HIV_FE ACC RF00480 DESC HIV Ribosomal frameshift signal LENG 52 MAXL 122 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:41:18 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 145 EFFN 7.004852 CKSUM 53117362 STATS LOCAL MSV -7.3913 0.71930 STATS LOCAL VITERBI -8.1694 0.71930 STATS LOCAL FORWARD -3.9181 0.71930 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.40967 1.57646 1.36764 1.22294 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 0.00000 * 1 2.89840 2.99363 3.35641 0.15091 1 U - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 2 3.94361 3.71632 4.49191 0.05647 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02290 4.65620 4.33265 1.46634 0.26236 1.09861 0.40547 3 3.55416 3.13171 4.07604 0.09346 3 U - - : 1.38629 1.38629 1.38629 1.38629 0.01926 4.65256 4.65256 1.46634 0.26236 1.21847 0.35052 4 3.84502 3.58027 4.38550 0.06370 4 U - - : 1.38629 1.38629 1.38629 1.38629 0.02734 4.65256 4.04950 1.46634 0.26236 1.21847 0.35052 5 2.75682 2.80809 3.30700 0.17488 5 U - - : 1.38629 1.38629 1.38629 1.38629 0.01941 4.64464 4.64464 1.46634 0.26236 1.43739 0.27121 6 3.51060 3.06512 4.03097 0.09903 6 U - - : 1.38629 1.38629 1.38629 1.38629 0.01941 4.64464 4.64464 1.46634 0.26236 0.64453 0.74425 7 0.05860 4.28167 3.61403 4.12587 7 A - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 8 1.87021 2.69847 0.32877 2.83370 8 G - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 9 2.54617 4.14585 0.12462 3.77417 9 G - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 10 2.30987 3.47309 0.18162 3.33013 10 G - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 11 0.03705 4.61358 4.24012 4.41857 11 A - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 12 0.30238 3.49111 1.65090 3.25456 12 A - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 13 0.35096 3.37137 1.54043 3.05005 13 A - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 14 0.39152 2.28842 2.22089 2.17126 14 A - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 15 2.92707 2.64111 3.01851 0.19081 15 U - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 16 2.07196 1.00427 1.96255 1.00172 16 u - - < 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 17 2.17953 1.78168 2.10395 0.51655 17 U - - < 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 18 2.42851 3.29288 0.19584 2.94611 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 19 3.33311 4.36323 0.06436 4.27465 19 G - - < 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 20 3.93351 0.18156 3.78894 2.08882 20 C - - < 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 21 5.10173 0.02935 5.07316 4.10003 21 C - - < 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 22 3.86736 3.34170 4.13402 0.07506 22 U - - < 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 23 2.58728 1.60507 2.29187 0.47349 23 U - - < 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 24 3.65515 0.16411 3.20626 2.46530 24 C - - < 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 25 4.56036 0.05735 4.14355 3.52620 25 C - - < 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 26 1.15270 0.90210 2.57552 1.59758 26 c - - _ 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 27 0.63969 2.19390 1.55911 1.89221 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 28 3.30282 0.13760 3.49900 2.78799 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 29 0.15829 3.21418 2.83185 3.05113 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 30 0.29327 2.92079 2.04866 2.63977 30 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 31 1.63241 2.65854 0.44551 2.36451 31 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 32 3.53134 4.60846 0.05276 4.40977 32 G - - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 33 2.49181 3.63858 0.15197 3.44397 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 34 1.11253 2.36860 0.72480 2.37260 34 g - - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 35 0.08718 3.87488 3.09499 4.04793 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 36 4.29290 4.57950 0.03099 5.02289 36 G - - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 37 2.63453 3.93741 0.12343 3.69414 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 38 4.41333 0.10289 4.22842 2.64389 38 C - - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 39 3.23201 0.20651 3.11398 2.27613 39 C - - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 40 0.67815 2.02943 1.52067 1.94863 40 A - - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 41 1.61947 2.22730 0.59158 1.96095 41 G - - > 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 42 2.21029 3.29041 0.21897 3.00077 42 G - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 43 1.35134 2.44495 0.54841 2.57038 43 G - - : 1.38629 1.38629 1.38629 1.38629 0.02549 4.65620 4.15621 1.46634 0.26236 1.09861 0.40547 44 0.10190 3.31929 3.45792 3.53342 44 A - - : 1.38629 1.38629 1.38629 1.38629 0.03324 4.65001 3.76651 1.46634 0.26236 0.79438 0.60122 45 0.03787 4.59187 4.21927 4.39687 45 A - - : 1.38629 1.38629 1.38629 1.38629 0.01945 4.64262 4.64262 1.46634 0.26236 1.48599 0.25654 46 2.85206 1.34491 3.41966 0.43234 46 U - - : 1.38629 1.38629 1.38629 1.38629 0.01945 4.64262 4.64262 1.46634 0.26236 1.19961 0.35855 47 3.92733 3.70169 4.47535 0.05738 47 U - - : 1.38629 1.38629 1.38629 1.38629 0.01939 4.64581 4.64581 1.46634 0.26236 0.67191 0.71485 48 3.94361 3.71632 4.49191 0.05647 48 U - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 49 2.76787 0.97327 3.37770 0.64392 49 U - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 50 2.21909 0.35526 2.96157 1.97644 50 C - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 51 2.41667 1.58528 2.89006 0.43029 51 U - - : 1.38629 1.38629 1.38629 1.38629 0.01919 4.65620 4.65620 1.46634 0.26236 1.09861 0.40547 52 2.49408 1.86478 2.77209 0.35672 52 U - - : 1.38629 1.38629 1.38629 1.38629 0.00964 4.64665 * 1.46634 0.26236 0.00000 * //