{"rfam": {"acc": "RF00390", "id": "TYMV_upPK", "description": "turnip yellow mosaic virus upstream pseudo-knot (TYMV_upPK)", "comment": "This family represents the upstream pseudoknot structure from turnip yellow mosaic virus (TYMV_upPK) which is thought to be needed for efficient transcription as disruption of the pseudoknot structure gives rise to a 50% drop in transcription efficiency [1]. This family acts in conjunction with Rfam:RF00233 to enhance translation [2]. The structure of TYMV_upPK have being reported in PDB: 6MJ0 [3].", "curation": {"author": "Moxon SJ, Ontiveros-Palacios N", "seed_source": "PMID:9223489, INFERNAL", "num_seed": 7, "num_full": 3, "num_species": 3, "type": "Cis-reg;", "structure_source": "Published; PMID:9223489"}, "cm": {"build_command": "cmbuild -F CM SEED", "calibrate_command": "cmcalibrate --mpi CM", "search_command": "cmsearch --cpu 4 --verbose --nohmmonly -T 30.00 -Z 2958934 CM SEQDB", "cutoffs": {"gathering": 38.0, "trusted": 38.1, "noise": 37.4}}, "release": {"date": "2026-01-16", "number": "15.1"}, "clan": {"acc": null, "id": null}}}