{"rfam": {"acc": "RF00243", "id": "traJ_5", "description": "traJ 5' UTR", "comment": "The FinOP system regulates the transfer of F-like plasmids. FinP Rfam:RF00107 encodes an antisense RNA product that is complementary to part of the 5' UTR of the traJ mRNA. The traJ gene encodes a protein required for transcription from the major transfer promoter, pY. The FinO protein is essential for effective repression, acting by binding to FinP and protecting it from RNase E degradation.", "curation": {"author": "Bateman A", "seed_source": "PMID:14633993", "num_seed": 6, "num_full": 7, "num_species": 9, "type": "Cis-reg;", "structure_source": "Predicted; ILM"}, "cm": {"build_command": "cmbuild -F CM SEED", "calibrate_command": "cmcalibrate --mpi CM", "search_command": "cmsearch --cpu 4 --verbose --nohmmonly -T 28.00 -Z 2958934 CM SEQDB", "cutoffs": {"gathering": 50.0, "trusted": 62.3, "noise": 45.1}}, "release": {"date": "2026-01-16", "number": "15.1"}, "clan": {"acc": "CL00016", "id": "FinP-traJ"}}}