INFERNAL1/a [1.1.4 | Dec 2020] NAME HIV-1_DIS ACC RF00175 DESC Human immunodeficiency virus type 1 dimerisation initiation site STATES 124 NODES 31 CLEN 40 W 54 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:19:40 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 70 EFFN 8.967896 CKSUM 2650015423 NULL 0.000 0.000 0.000 0.000 GA 35.00 TC 35.00 NC 34.90 EFP7GF -15.4150 0.71973 ECMLC 0.54859 -8.81824 3.06547 1600000 813687 0.001475 ECMGC 0.41781 -20.95980 -3.76367 1600000 527636 0.000758 ECMLI 0.54231 -8.11538 3.57794 1600000 681074 0.001762 ECMGI 0.43462 -17.93066 -2.01659 1600000 403555 0.000991 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 54 73 -8.532 -8.739 -0.018 -7.154 IL 1 1 2 1 4 1 3 59 78 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 3 58 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - G - - - ML 3 2 3 5 3 1 4 55 73 -9.478 -0.007 -8.132 -2.737 -4.958 1.914 -4.322 D 4 2 3 5 3 0 0 53 72 -6.174 -1.687 -0.566 IL 5 5 3 5 3 1 2 57 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - G - - - ML 6 5 3 8 3 1 3 53 72 -5.276 -0.043 -8.132 -4.118 -5.632 1.959 -4.851 D 7 5 3 8 3 0 0 52 70 -6.174 -1.687 -0.566 IL 8 8 3 8 3 1 2 55 73 -1.658 -0.656 -4.358 0.000 0.000 0.000 0.000 [ MATL 3 ] 4 - A - - - ML 9 8 3 11 3 1 2 52 71 -9.806 -0.032 -5.600 1.869 -3.980 -2.234 -3.789 D 10 8 3 11 3 0 0 51 69 -5.620 -0.734 -1.403 IL 11 11 3 11 3 1 1 53 72 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 47 - G - - MR 12 11 3 14 3 1 3 51 70 -9.781 -0.007 -8.099 -1.562 -0.701 1.502 -2.228 D 13 11 3 14 3 0 0 50 68 -6.863 -2.041 -0.418 IR 14 14 3 14 3 1 1 52 71 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 5 ] - 46 - g - - MR 15 14 3 17 5 1 2 50 69 -8.459 -0.027 -6.415 -8.486 -9.378 0.690 -2.165 0.909 -1.810 D 16 14 3 17 5 0 0 49 67 -5.636 -0.553 -3.262 -4.693 -2.688 IR 17 17 3 17 5 1 1 51 69 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 45 C G - - MP 18 17 3 22 6 2 3 49 68 -9.917 -3.448 -0.150 -8.633 -8.912 -9.307 -7.494 -7.588 -3.318 -3.773 -1.361 -6.782 3.901 -6.474 -7.138 -3.658 -6.772 -5.686 -2.156 -7.490 -3.303 -5.951 ML 19 17 3 22 6 1 1 48 66 -6.435 -6.781 -1.074 -1.190 -6.631 -4.161 0.154 0.110 -0.521 0.153 MR 20 17 3 22 6 1 1 48 66 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 3 22 6 0 0 45 64 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 1 49 67 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 1 48 67 -3.368 -0.234 -6.879 -5.047 -6.153 0.000 0.000 0.000 0.000 [ MATP 7 ] 6 43 U A - - MP 24 23 6 28 6 2 3 47 66 -9.925 -9.865 -0.012 -8.641 -8.921 -9.316 -6.274 -6.416 -5.675 -2.601 -4.082 -5.880 0.917 -4.971 -5.750 -2.549 -5.911 -4.576 3.722 -6.168 -1.770 -4.528 ML 25 23 6 28 6 1 1 46 65 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 6 1 1 46 64 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 27 23 6 28 6 0 0 44 63 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 28 28 5 28 6 1 1 47 65 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 29 29 6 29 5 1 1 46 65 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 8 ] 7 42 C G - - MP 30 29 6 34 6 2 3 45 63 -5.857 -9.865 -0.036 -8.641 -8.921 -9.316 -7.468 -7.650 -6.604 -3.825 -2.972 -6.644 3.920 -6.188 -6.972 -3.740 -6.678 -5.862 -1.932 -7.365 -2.129 -5.767 ML 31 29 6 34 6 1 1 45 64 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 32 29 6 34 6 1 1 45 63 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 33 29 6 34 6 0 0 43 62 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 34 34 5 34 6 1 1 45 63 -2.936 -3.199 -0.556 -4.854 -5.631 -5.291 0.000 0.000 0.000 0.000 IR 35 35 6 35 5 1 1 45 63 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 9 ] 9 41 G C - - MP 36 35 6 40 4 2 2 43 61 -8.532 -8.739 -0.018 -7.154 -6.428 -2.504 -6.681 -1.105 -7.558 -5.493 -2.437 -7.200 -5.564 3.853 -5.782 -1.937 -2.735 -2.665 -4.572 -5.640 ML 37 35 6 40 4 1 1 44 63 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 38 35 6 40 4 1 1 44 63 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 39 35 6 40 4 0 0 43 62 -4.568 -4.250 -2.265 -0.520 IL 40 40 5 40 4 1 1 46 65 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 41 41 6 41 3 1 1 45 63 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 10 - G - - - ML 42 41 6 44 3 1 1 40 59 -9.806 -0.007 -8.124 -2.378 -4.734 1.893 -4.135 D 43 41 6 44 3 0 0 39 57 -5.620 -0.734 -1.403 IL 44 44 3 44 3 1 1 41 59 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 11 ] - 40 - G - - MR 45 44 3 47 3 1 1 39 58 -9.806 -0.007 -8.124 -3.352 -3.510 1.907 -3.995 D 46 44 3 47 3 0 0 38 56 -6.390 -1.568 -0.620 IR 47 47 3 47 3 1 1 40 58 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 12 ] - 39 - G - - MR 48 47 3 50 3 1 1 38 57 -9.806 -0.007 -8.124 -4.118 -5.632 1.959 -4.851 D 49 47 3 50 3 0 0 37 55 -6.390 -1.568 -0.620 IR 50 50 3 50 3 1 1 39 57 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 13 ] - 38 - A - - MR 51 50 3 53 5 1 1 37 56 -8.483 -0.015 -8.298 -8.510 -9.402 1.915 -3.467 -3.844 -3.871 D 52 50 3 53 5 0 0 36 54 -5.352 -0.707 -2.978 -4.409 -2.404 IR 53 53 3 53 5 1 1 38 56 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 14 ] 11 37 C G - - MP 54 53 3 58 6 2 2 36 55 -9.925 -9.865 -0.012 -8.641 -8.921 -9.316 -6.518 -6.703 -5.858 -2.884 -4.243 -6.019 3.837 -5.190 -5.987 -2.823 -6.063 -4.920 -0.094 -6.397 -1.984 -4.785 ML 55 53 3 58 6 1 1 35 53 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 56 53 3 58 6 1 1 35 53 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 57 53 3 58 6 0 0 33 51 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 58 58 5 58 6 1 1 36 54 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 59 59 6 59 5 1 1 36 54 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 15 ] 12 36 U A - - MP 60 59 6 64 6 2 2 34 53 -9.925 -9.865 -0.012 -8.641 -8.921 -9.316 -6.133 -6.273 -5.585 -2.414 -4.017 -5.817 0.932 -4.899 -5.651 -2.318 -5.834 -4.406 3.644 -6.044 -0.157 -4.435 ML 61 59 6 64 6 1 1 33 51 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 62 59 6 64 6 1 1 33 51 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 63 59 6 64 6 0 0 31 49 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 64 64 5 64 6 1 1 34 52 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 65 65 6 65 5 1 1 34 52 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 16 ] 13 35 U A - - MP 66 65 6 70 6 2 2 32 51 -9.925 -9.865 -0.012 -8.641 -8.921 -9.316 -6.254 -6.405 -5.692 -2.563 -4.117 -5.915 0.517 -5.002 -5.760 -2.476 -5.939 -4.563 3.674 -6.155 0.226 -4.503 ML 67 65 6 70 6 1 1 31 49 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 68 65 6 70 6 1 1 31 49 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 69 65 6 70 6 0 0 29 47 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 70 70 5 70 6 1 1 32 50 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 71 71 6 71 5 1 1 32 50 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 17 ] 14 34 G C - - MP 72 71 6 76 6 2 2 30 49 -9.925 -9.865 -0.036 -5.739 -8.921 -9.316 -6.982 -4.354 -7.642 -0.688 -8.408 -5.725 -3.184 -7.816 -5.711 3.886 -5.962 -2.169 -3.496 -5.986 -5.406 -6.479 ML 73 71 6 76 6 1 1 29 47 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 74 71 6 76 6 1 1 29 47 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 75 71 6 76 6 0 0 27 45 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 76 76 5 76 6 1 1 30 48 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 77 77 6 77 5 1 1 30 48 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 18 ] 15 33 C G - - MP 78 77 6 82 6 2 2 28 47 -9.902 -9.841 -0.012 -8.617 -8.897 -9.292 -5.842 -5.876 -5.405 -1.933 -3.911 -5.723 3.680 -4.766 -5.442 -1.790 -3.977 -3.837 0.564 -5.817 -0.424 -4.228 ML 79 77 6 82 6 1 1 27 45 -6.715 -7.061 -0.817 -1.470 -6.911 -4.440 -0.075 0.489 -0.777 0.089 MR 80 77 6 82 6 1 1 27 45 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 81 77 6 82 6 0 0 25 43 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 82 82 5 82 6 1 1 28 46 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 83 83 6 83 5 1 1 28 46 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 19 ] 16 32 u a - - MP 84 83 6 88 6 2 2 26 45 -4.969 -9.865 -0.074 -8.641 -6.270 -9.316 -5.250 -5.206 -5.023 -1.298 -3.744 -5.516 1.173 -4.517 -5.018 -0.095 -5.363 -3.102 2.674 -5.339 2.468 -3.832 ML 85 83 6 88 6 1 1 25 43 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 86 83 6 88 6 1 1 25 43 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 87 83 6 88 6 0 0 23 41 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 88 88 5 88 6 1 1 26 44 -3.197 -3.460 -0.448 -5.115 -5.892 -5.552 0.000 0.000 0.000 0.000 IR 89 89 6 89 5 1 1 26 44 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 20 ] 18 31 G C - - MP 90 89 6 94 4 2 2 24 42 -3.494 -4.665 -0.350 -3.520 -5.331 -3.646 -5.313 0.404 -6.440 -5.355 -1.486 -5.863 -2.706 3.650 -5.402 -0.097 -1.746 -4.956 -3.523 -4.228 ML 91 89 6 94 4 1 1 23 42 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 92 89 6 94 4 1 1 23 41 -5.138 -4.167 -1.159 -1.095 0.031 0.323 -0.661 0.131 D 93 89 6 94 4 0 0 22 40 -4.568 -4.250 -2.265 -0.520 IL 94 94 5 94 4 1 1 24 42 -2.763 -3.446 -0.426 -5.932 0.000 0.000 0.000 0.000 IR 95 95 6 95 3 1 1 24 42 -1.747 -0.608 -4.447 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - A - - - ML 96 95 6 98 3 1 1 22 40 -9.363 -0.008 -8.017 1.451 -0.865 -1.932 -1.139 D 97 95 6 98 3 0 0 21 39 -7.772 -0.591 -1.593 IL 98 98 3 98 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - A - - - ML 99 98 3 101 3 1 1 20 39 -9.460 -0.007 -8.114 1.584 -3.422 -0.330 -3.137 D 100 98 3 101 3 0 0 20 38 -6.583 -1.057 -0.975 IL 101 101 3 101 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - G - - - ML 102 101 3 104 3 1 1 19 37 -9.478 -0.007 -8.132 -2.135 -4.066 1.846 -3.074 D 103 101 3 104 3 0 0 19 38 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 23 42 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 23 - U - - - ML 105 104 3 107 3 1 1 18 36 -9.478 -0.007 -8.132 -1.881 0.304 -2.266 1.193 D 106 104 3 107 3 0 0 18 36 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 24 - G - - - ML 108 107 3 110 3 1 1 17 35 -9.478 -0.007 -8.132 -4.118 -5.632 1.959 -4.851 D 109 107 3 110 3 0 0 17 35 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 25 - C - - - ML 111 110 3 113 3 1 1 16 34 -5.377 -0.040 -8.132 -4.307 1.918 -4.908 -2.872 D 112 110 3 113 3 0 0 15 33 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 18 35 -1.644 -0.665 -4.344 0.000 0.000 0.000 0.000 [ MATL 27 ] 27 - A - - - ML 114 113 3 116 3 1 1 14 32 -9.478 -0.007 -8.132 1.335 -3.409 0.337 -3.048 D 115 113 3 116 3 0 0 15 33 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 28 - C - - - ML 117 116 3 119 3 1 1 12 30 -9.478 -0.057 -4.734 -2.172 1.809 -4.026 -2.225 D 118 116 3 119 3 0 0 13 32 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 29 - a - - - ML 120 119 3 122 2 1 1 1 1 * 0.000 0.986 -1.506 -0.564 -0.012 D 121 119 3 122 2 0 0 0 0 * 0.000 IL 122 122 3 122 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 30 ] - - - - - - E 123 122 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME HIV-1_DIS ACC RF00175 DESC Human immunodeficiency virus type 1 dimerisation initiation site LENG 40 MAXL 101 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:19:40 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 70 EFFN 13.992310 CKSUM 2650015423 STATS LOCAL MSV -6.5418 0.71973 STATS LOCAL VITERBI -7.2961 0.71973 STATS LOCAL FORWARD -3.9272 0.71973 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.51948 1.42186 0.90602 1.99673 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 0.00000 * 1 3.42773 5.32414 0.04630 4.83891 1 G - - : 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 2 4.67505 5.79167 0.01814 5.18523 2 G - - : 1.38629 1.38629 1.38629 1.38629 0.03753 3.46112 5.21430 0.31644 1.30467 1.09861 0.40547 3 0.07251 4.59196 3.02683 4.47915 4 A - - : 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 4 3.84036 0.06144 4.74648 3.52595 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 5 4.53440 2.25714 4.49755 0.13527 6 U - - < 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 6 5.17511 0.03784 5.19062 3.65326 7 C - - < 1.38629 1.38629 1.38629 1.38629 0.03747 3.46277 5.21430 0.31692 1.30338 1.09861 0.40547 7 3.50947 4.83277 0.05827 3.97756 9 G - - < 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 8 3.14389 5.16207 0.05959 4.71005 10 G - - - 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 9 4.79799 0.08909 4.70191 2.68953 11 C - - < 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 10 4.64352 2.27895 4.53664 0.13093 12 U - - < 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 11 4.67372 2.58941 4.57911 0.09945 13 U - - < 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 12 3.26376 5.09575 0.05205 5.05868 14 G - - < 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 13 4.14184 0.17964 3.94353 2.04674 15 C - - < 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 14 3.99323 2.15437 2.88692 0.21092 16 U - - < 1.38629 1.38629 1.38629 1.38629 0.08080 2.90439 3.77913 0.18793 1.76418 1.09861 0.40547 15 2.56046 4.08870 0.12051 3.93709 18 G - - < 1.38629 1.38629 1.38629 1.38629 0.20250 2.35656 2.42395 0.11299 2.23639 0.38944 1.13146 16 0.32627 2.00796 2.98002 2.37151 20 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01191 5.12919 5.12919 1.46634 0.26236 0.28223 1.40284 17 0.26505 4.28988 1.59160 4.16539 21 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01108 5.20102 5.20102 1.46634 0.26236 0.45970 0.99823 18 2.98853 4.56303 0.08961 3.69196 22 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 19 3.10624 1.14227 3.18809 0.51938 23 U - - _ 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 20 4.67505 5.79167 0.01814 5.18523 24 G - - _ 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 21 4.79417 0.04204 5.13674 3.61138 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.03560 3.52227 5.21430 0.33474 1.25711 1.09861 0.40547 22 0.43658 4.35419 1.12167 4.18821 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 23 2.97779 0.10513 4.56447 3.25790 28 C - - _ 1.38629 1.38629 1.38629 1.38629 0.04818 5.21430 3.17976 1.46634 0.26236 1.09861 0.40547 24 0.65274 2.64760 1.79854 1.41460 29 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05177 3.10535 5.17747 0.23523 1.56252 0.23229 1.57368 25 3.61375 0.19808 3.88423 2.02358 31 C - - > 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 26 0.84428 2.95938 0.69944 3.84343 32 g - - > 1.38629 1.38629 1.38629 1.38629 0.03747 5.21430 3.46277 1.46634 0.26236 1.09861 0.40547 27 2.45626 4.38181 0.12121 4.14193 33 G - - > 1.38629 1.38629 1.38629 1.38629 0.01123 5.18806 5.18806 1.46634 0.26236 0.29789 1.35627 28 5.13276 0.05995 4.99572 3.08950 34 C - - > 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 29 0.18432 4.72064 1.91326 4.43773 35 A - - > 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 30 0.19114 4.68229 1.88031 4.40799 36 A - - > 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 31 2.85006 4.85330 0.07905 4.56992 37 G - - > 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 32 0.04208 3.96860 4.50235 4.48974 38 A - - - 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 33 4.67505 5.79167 0.01814 5.18523 39 G - - - 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 34 4.19521 3.91823 0.04564 4.63888 40 G - - - 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 35 4.87712 0.04582 4.72700 3.56442 41 C - - > 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 36 3.85408 5.35557 0.03251 5.10377 42 G - - > 1.38629 1.38629 1.38629 1.38629 0.01094 5.21430 5.21430 1.46634 0.26236 1.09861 0.40547 37 0.14600 4.67837 2.17136 4.38025 43 A - - > 1.38629 1.38629 1.38629 1.38629 0.17906 1.90261 4.21524 0.07138 2.67524 1.09861 0.40547 38 2.65325 5.06775 0.08863 4.81649 45 G - - > 1.38629 1.38629 1.38629 1.38629 0.03015 5.20493 3.72086 1.46634 0.26236 0.55184 0.85776 39 0.88724 3.13933 0.70363 2.99348 46 g - - : 1.38629 1.38629 1.38629 1.38629 0.01114 5.19558 5.19558 1.46634 0.26236 1.85799 0.16959 40 2.73064 1.80776 0.30815 3.32443 47 G - - : 1.38629 1.38629 1.38629 1.38629 0.00559 5.19002 * 1.46634 0.26236 0.00000 * //