{"rfam": {"acc": "RF00111", "id": "SdsR_RyeB", "description": "SdsR_RyeB RNA", "comment": "This ncRNA was identified in a large scale screen of E. coli [1]. The exact 5' and 3' ends of this RNA are uncertain. This RNA overlaps RFAM:RF00101 on the opposite strand suggesting that the two may act in a concerted manner. The homologous sRNA in S. enterica was shown to regulate synthesis of major porin OmpD. A study using Salmonella identified 20 targets of this sRNA including transcriptional regulator, CRP, global DNA-binding factors, StpA and HupB, the antibiotic transporter protein, TolC, and the RtsA/B two-component system (TCS), and validated their post-transcriptional control by SdsR/RyeB RNA. SdsR (sigma-S-dependent sRNA).", "curation": {"author": "Bateman A", "seed_source": "Gottesman S", "num_seed": 17, "num_full": 281, "num_species": 297, "type": "Gene; sRNA;", "structure_source": "Predicted; PFOLD"}, "cm": {"build_command": "cmbuild -F CM SEED", "calibrate_command": "cmcalibrate --mpi CM", "search_command": "cmsearch --cpu 4 --verbose --nohmmonly -T 30.36 -Z 2958934 CM SEQDB", "cutoffs": {"gathering": 38.0, "trusted": 38.0, "noise": 37.7}}, "release": {"date": "2026-01-16", "number": "15.1"}, "clan": {"acc": "CL00105", "id": "RyeA-RyeB"}}}