INFERNAL1/a [1.1.4 | Dec 2020] NAME SNORD31 ACC RF00089 DESC Small nucleolar RNA SNORD31 STATES 211 NODES 69 CLEN 69 W 88 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:15:07 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 26 EFFN 4.116455 CKSUM 3431122816 NULL 0.000 0.000 0.000 0.000 GA 40.00 TC 40.00 NC 39.50 EFP7GF -11.1768 0.71875 ECMLC 0.66675 -6.24497 2.00119 1600000 293085 0.004094 ECMGC 0.39852 -18.61120 -5.23988 1600000 82468 0.004850 ECMLI 0.66233 -4.16658 3.68001 1600000 216879 0.005533 ECMGI 0.46109 -12.53484 -1.47483 1600000 65590 0.006098 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 88 111 -7.645 -7.852 -0.033 -6.266 IL 1 1 2 1 4 3 32 91 114 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 3 32 90 113 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 1 - a - - - ML 3 2 3 5 3 4 31 88 111 -8.621 -0.013 -7.275 0.581 0.376 -1.445 -0.252 D 4 2 3 5 3 0 27 86 109 -6.174 -1.687 -0.566 IL 5 5 3 5 3 3 31 89 112 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 2 ] 2 - U - - - ML 6 5 3 8 3 3 30 87 110 -8.977 -0.012 -7.294 -0.349 -0.589 -1.642 1.157 D 7 5 3 8 3 0 26 86 108 -5.620 -0.734 -1.403 IL 8 8 3 8 3 2 29 88 110 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 76 - g - - MR 9 8 3 11 3 3 29 86 109 -8.977 -0.012 -7.294 -0.040 -0.729 0.566 -0.084 D 10 8 3 11 3 0 25 84 107 -6.390 -1.568 -0.620 IR 11 11 3 11 3 1 29 87 109 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 4 ] - 75 - u - - MR 12 11 3 14 5 3 28 85 108 -7.682 -0.026 -7.497 -7.709 -8.601 0.148 -0.762 -0.699 0.754 D 13 11 3 14 5 0 24 84 106 -5.352 -0.707 -2.978 -4.409 -2.404 IR 14 14 3 14 5 1 27 85 108 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 3 74 c g - - MP 15 14 3 19 6 3 27 84 107 -9.414 -9.354 -0.017 -8.130 -8.410 -8.805 -3.112 -3.051 -3.215 1.110 -2.612 -4.045 2.527 -3.146 -3.195 0.805 -3.728 -0.275 1.577 -3.369 0.411 -2.141 ML 16 14 3 19 6 1 25 83 106 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 17 14 3 19 6 1 24 83 105 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 18 14 3 19 6 0 21 81 103 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 19 19 5 19 6 1 26 84 106 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 20 20 6 20 5 1 26 83 106 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 4 73 a u - - MP 21 20 6 25 4 2 25 82 105 -7.645 -7.852 -0.033 -6.266 -3.537 -2.779 -3.601 2.835 -3.833 -4.592 0.415 -3.833 -3.623 1.729 -4.128 0.120 0.922 -3.805 -1.506 -2.534 ML 22 20 6 25 4 1 24 82 105 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 23 20 6 25 4 1 22 81 104 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 24 20 6 25 4 0 21 80 103 -4.568 -4.250 -2.265 -0.520 IL 25 25 5 25 4 1 25 83 106 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 26 26 6 26 3 1 24 82 105 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 5 - c - - - ML 27 26 6 29 3 1 24 80 102 -8.621 -0.013 -7.275 -0.291 0.796 -0.827 -0.179 D 28 26 6 29 3 0 20 78 101 -6.174 -1.687 -0.566 IL 29 29 3 29 3 1 24 81 104 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 6 - c - - - ML 30 29 3 32 3 1 23 79 101 -8.621 -0.179 -3.133 -0.547 0.800 -1.753 0.354 D 31 29 3 32 3 0 20 77 100 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 23 80 103 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 7 - A - - - ML 33 32 3 35 3 1 22 78 101 -8.457 -0.131 -3.573 1.403 -1.081 -1.630 -0.838 D 34 32 3 35 3 0 19 76 99 -7.535 -1.214 -0.828 IL 35 35 3 35 3 1 23 79 102 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 8 - G - - - ML 36 35 3 38 3 1 22 77 100 -3.183 -0.180 -7.088 -0.166 -1.216 1.059 -0.751 D 37 35 3 38 3 0 18 75 98 -7.644 -0.413 -2.036 IL 38 38 3 38 3 1 21 77 100 -1.869 -0.548 -4.569 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - U - - - ML 39 38 3 41 3 1 21 76 98 -8.621 -0.013 -7.275 -1.728 -1.756 -2.013 1.657 D 40 38 3 41 3 0 16 74 97 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 20 77 100 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - G - - - ML 42 41 3 44 3 1 20 75 97 -8.621 -0.013 -7.275 -2.872 -4.249 1.899 -3.609 D 43 41 3 44 3 0 15 73 96 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 19 76 99 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - A - - - ML 45 44 3 47 3 1 19 74 96 -8.621 -0.052 -4.924 1.766 -2.217 -2.458 -2.303 D 46 44 3 47 3 0 15 72 94 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 19 75 98 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - U - - - ML 48 47 3 50 3 1 19 73 95 -8.582 -0.013 -7.237 -2.658 -2.462 -3.431 1.835 D 49 47 3 50 3 0 14 71 93 -6.645 -2.158 -0.385 IL 50 50 3 50 3 1 18 74 97 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - G - - - ML 51 50 3 53 3 1 18 72 94 -8.582 -0.013 -7.237 -2.805 -4.175 1.894 -3.540 D 52 50 3 53 3 0 14 70 92 -6.645 -2.158 -0.385 IL 53 53 3 53 3 1 17 73 96 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 54 53 3 56 3 1 17 71 93 -8.582 -0.066 -4.571 1.887 -3.602 -3.122 -3.269 D 55 53 3 56 3 0 13 69 92 -6.645 -0.992 -1.037 IL 56 56 3 56 3 1 17 72 95 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - g - - - ML 57 56 3 59 3 1 16 70 92 -8.571 -0.097 -4.002 -0.002 -0.891 0.550 -0.003 D 58 56 3 59 3 0 12 68 91 -6.762 -2.275 -0.351 IL 59 59 3 59 3 1 16 71 94 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 18 ] 17 - u - - - ML 60 59 3 62 3 1 16 69 91 -8.488 -0.014 -7.142 -0.213 -0.255 -1.448 0.950 D 61 59 3 62 3 0 12 67 90 -7.368 -0.517 -1.760 IL 62 62 3 62 3 1 15 70 93 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 18 - U - - - ML 63 62 3 65 3 1 15 68 90 -8.621 -0.013 -7.275 -0.907 -0.647 -1.658 1.329 D 64 62 3 65 3 0 10 66 89 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 14 69 92 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 19 - u - - - ML 66 65 3 68 3 1 15 67 89 -8.621 -0.013 -7.275 -0.343 0.049 0.017 0.221 D 67 65 3 68 3 0 9 65 88 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 13 68 91 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 20 - a - - - ML 69 68 3 71 3 1 14 66 88 -8.621 -0.036 -5.517 0.835 -0.697 -0.444 -0.210 D 70 68 3 71 3 0 9 64 87 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 13 67 90 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 21 - a - - - ML 72 71 3 74 3 1 14 65 87 -8.599 -0.013 -7.253 0.908 -1.179 -0.839 0.167 D 73 71 3 74 3 0 8 63 86 -6.466 -1.195 -0.858 IL 74 74 3 74 3 1 12 66 89 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 22 - U - - - ML 75 74 3 77 3 1 13 64 86 -2.864 -0.224 -7.275 -0.834 -1.605 -2.201 1.532 D 76 74 3 77 3 0 7 61 84 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 12 64 87 -1.576 -0.664 -4.902 0.000 0.000 0.000 0.000 [ MATL 24 ] 25 - A - - - ML 78 77 3 80 3 1 12 62 85 -8.621 -0.013 -7.275 1.791 -2.967 -1.993 -2.637 D 79 77 3 80 3 0 7 60 83 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 11 63 86 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 26 - C - - - ML 81 80 3 83 3 1 12 61 84 -8.621 -0.013 -7.275 -2.493 1.719 -3.346 -1.214 D 82 80 3 83 3 0 6 59 82 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 10 62 85 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 27 - C - - - ML 84 83 3 86 3 1 11 60 82 -8.621 -0.013 -7.275 -2.341 1.675 -3.209 -0.997 D 85 83 3 86 3 0 6 58 81 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 10 61 84 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 28 - G - - - ML 87 86 3 89 3 1 10 59 81 -8.621 -0.013 -7.275 -1.336 -3.218 1.740 -2.673 D 88 86 3 89 3 0 5 57 80 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 9 60 83 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 29 - C - - - ML 90 89 3 92 3 1 10 58 80 -8.621 -0.013 -7.275 -3.291 1.869 -4.072 -2.431 D 91 89 3 92 3 0 4 56 79 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 8 59 82 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 30 - C - - - ML 93 92 3 95 3 1 9 57 79 -8.621 -0.013 -7.275 -3.291 1.869 -4.072 -2.431 D 94 92 3 95 3 0 4 55 78 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 8 58 81 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 31 - C - - - ML 96 95 3 98 3 1 8 56 78 -8.621 -0.052 -4.918 -3.291 1.869 -4.072 -2.431 D 97 95 3 98 3 0 3 54 77 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 7 57 80 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 32 - C - - - ML 99 98 3 101 3 1 8 55 77 -8.582 -0.013 -7.236 -3.208 1.862 -3.997 -2.359 D 100 98 3 101 3 0 3 53 76 -6.647 -0.990 -1.039 IL 101 101 3 101 3 1 6 56 79 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 33 - A - - - ML 102 101 3 104 3 1 8 54 76 -8.621 -0.013 -7.275 1.768 -2.672 -2.530 -1.921 D 103 101 3 104 3 0 2 52 75 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 6 55 78 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 34 - G - - - ML 105 104 3 107 3 1 7 53 75 -8.621 -0.013 -7.275 -2.169 -3.285 1.789 -2.183 D 106 104 3 107 3 0 1 51 74 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 5 54 77 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 35 - U - - - ML 108 107 3 110 3 1 7 52 74 -8.621 -0.013 -7.275 -1.714 -1.748 -1.978 1.652 D 109 107 3 110 3 0 1 50 73 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 5 53 76 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 35 ] 36 - C - - - ML 111 110 3 113 3 1 6 51 73 -8.621 -0.013 -7.275 -3.291 1.869 -4.072 -2.431 D 112 110 3 113 3 0 0 49 72 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 4 52 75 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 37 - U - - - ML 114 113 3 116 3 1 6 50 72 -8.621 -0.013 -7.275 -2.729 -2.522 -3.504 1.843 D 115 113 3 116 3 0 0 48 71 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 4 51 74 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 38 - G - - - ML 117 116 3 119 3 1 5 49 71 -8.621 -0.013 -7.275 -2.872 -4.249 1.899 -3.609 D 118 116 3 119 3 0 0 47 70 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 3 50 73 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 39 - A - - - ML 120 119 3 122 3 1 4 48 70 -8.621 -0.013 -7.275 1.893 -3.675 -3.189 -3.348 D 121 119 3 122 3 0 0 46 69 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 3 49 72 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 40 - U - - - ML 123 122 3 125 3 1 3 47 69 -8.621 -0.013 -7.275 -0.689 -1.374 -1.383 1.384 D 124 122 3 125 3 0 0 45 68 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 2 48 71 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 41 - u - - - ML 126 125 3 128 3 1 2 46 68 -8.621 -0.013 -7.275 0.036 0.325 -1.419 0.431 D 127 125 3 128 3 0 0 45 68 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 2 47 70 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 42 - a - - - ML 129 128 3 131 3 1 1 45 67 -8.621 -0.275 -2.548 0.899 -0.977 -0.599 -0.049 D 130 128 3 131 3 0 0 45 68 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 46 68 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 43 - c - - - ML 132 131 3 134 3 1 2 42 65 -5.334 -0.048 -7.016 -0.006 0.811 -1.500 -0.157 D 133 131 3 134 3 0 0 45 68 -0.494 -3.452 -2.331 IL 134 134 3 134 3 1 1 46 68 -1.173 -0.910 -5.367 0.000 0.000 0.000 0.000 [ MATL 43 ] 46 - U - - - ML 135 134 3 137 3 1 2 40 59 -8.621 -0.013 -7.275 -0.994 -0.628 -1.085 1.251 D 136 134 3 137 3 0 0 38 58 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 42 61 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 47 - G - - - ML 138 137 3 140 3 1 1 39 58 -8.621 -0.013 -7.275 -0.189 -1.325 1.204 -1.250 D 139 137 3 140 3 0 0 37 57 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 41 60 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 48 - U - - - ML 141 140 3 143 3 1 1 38 57 -8.621 -0.013 -7.275 -2.729 -2.522 -3.504 1.843 D 142 140 3 143 3 0 0 36 56 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 40 59 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 49 - G - - - ML 144 143 3 146 3 1 1 36 55 -8.621 -0.013 -7.275 -2.872 -4.249 1.899 -3.609 D 145 143 3 146 3 0 0 35 54 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 39 58 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 50 - A - - - ML 147 146 3 149 3 1 1 35 54 -8.621 -0.013 -7.275 1.540 -1.357 -1.518 -1.502 D 148 146 3 149 3 0 0 34 53 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 38 57 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 51 - C - - - ML 150 149 3 152 3 1 1 34 53 -8.621 -0.050 -4.999 -1.388 1.509 -1.704 -1.106 D 151 149 3 152 3 0 0 33 52 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 37 56 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 49 ] 52 - U - - - ML 153 152 3 155 3 1 1 33 52 -8.585 -0.013 -7.239 -1.160 -1.689 -2.358 1.607 D 154 152 3 155 3 0 0 32 51 -6.620 -1.018 -1.011 IL 155 155 3 155 3 1 1 36 55 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 53 - G - - - ML 156 155 3 158 3 1 1 32 51 -8.621 -0.013 -7.275 -2.872 -4.249 1.899 -3.609 D 157 155 3 158 3 0 0 31 50 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 35 54 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 54 - A - - - ML 159 158 3 161 3 1 1 31 50 -8.621 -0.013 -7.275 1.893 -3.675 -3.189 -3.348 D 160 158 3 161 3 0 0 30 49 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 34 53 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 55 - a - - - ML 162 161 3 164 3 1 1 30 49 -8.621 -0.013 -7.275 0.921 -1.279 -1.439 0.407 D 163 161 3 164 3 0 0 29 48 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 33 52 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 56 - a - - - ML 165 164 3 167 3 1 1 29 48 -4.434 -0.078 -7.275 0.943 -1.207 -1.027 0.206 D 166 164 3 167 3 0 0 27 46 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 30 49 -1.656 -0.658 -4.356 0.000 0.000 0.000 0.000 [ MATL 54 ] 58 - G - - - ML 168 167 3 170 3 1 1 28 46 -8.621 -0.013 -7.275 -1.107 -1.796 1.569 -1.829 D 169 167 3 170 3 0 0 27 46 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 30 49 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 59 - G - - - ML 171 170 3 173 3 1 1 26 45 -8.621 -0.013 -7.275 -1.276 -3.177 1.729 -2.633 D 172 170 3 173 3 0 0 26 44 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 29 48 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 60 - U - - - ML 174 173 3 176 3 1 1 25 44 -8.621 -0.013 -7.275 -1.603 -1.685 -1.717 1.611 D 175 173 3 176 3 0 0 24 43 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 28 47 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 61 - A - - - ML 177 176 3 179 3 1 1 24 43 -8.621 -0.151 -3.372 1.533 -1.915 -1.952 -0.779 D 178 176 3 179 3 0 0 23 42 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 27 46 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 58 ] 62 - U - - - ML 180 179 3 182 3 1 1 23 42 -3.992 -0.339 -2.772 -0.797 -0.648 -1.825 1.324 D 181 179 3 182 3 0 0 22 40 -7.385 -0.510 -1.776 IL 182 182 3 182 3 1 1 24 43 -1.705 -0.630 -4.405 0.000 0.000 0.000 0.000 [ MATL 59 ] 64 - u - - - ML 183 182 3 185 3 1 1 22 40 -8.426 -0.015 -7.080 -0.176 -0.068 -1.050 0.747 D 184 182 3 185 3 0 0 21 39 -7.684 -0.400 -2.075 IL 185 185 3 185 3 1 1 25 44 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 65 - U - - - ML 186 185 3 188 3 1 1 21 39 -8.621 -0.013 -7.275 -1.452 -0.058 -2.240 1.300 D 187 185 3 188 3 0 0 20 39 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 24 43 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 66 - U - - - ML 189 188 3 191 3 1 1 19 38 -8.621 -0.013 -7.275 -1.133 -1.308 -2.229 1.549 D 190 188 3 191 3 0 0 19 38 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 23 41 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 67 - C - - - ML 192 191 3 194 3 1 1 18 37 -8.621 -0.013 -7.275 -3.291 1.869 -4.072 -2.431 D 193 191 3 194 3 0 0 18 36 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 22 40 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 63 ] 68 - U - - - ML 195 194 3 197 3 1 1 17 36 -8.621 -0.013 -7.275 -2.729 -2.522 -3.504 1.843 D 196 194 3 197 3 0 0 17 35 -6.174 -1.687 -0.566 IL 197 197 3 197 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 64 ] 69 - G - - - ML 198 197 3 200 3 1 1 16 34 -8.621 -0.013 -7.275 -2.872 -4.249 1.899 -3.609 D 199 197 3 200 3 0 0 16 34 -6.174 -1.687 -0.566 IL 200 200 3 200 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 65 ] 70 - A - - - ML 201 200 3 203 3 1 1 14 33 -8.621 -0.216 -2.873 1.893 -3.675 -3.189 -3.348 D 202 200 3 203 3 0 0 14 33 -6.174 -1.687 -0.566 IL 203 203 3 203 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 66 ] 71 - g - - - ML 204 203 3 206 3 1 1 13 31 -8.420 -0.065 -4.613 -0.045 -1.057 0.687 -0.088 D 205 203 3 206 3 0 0 12 31 -7.708 -1.860 -0.475 IL 206 206 3 206 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 67 ] 72 - C - - - ML 207 206 3 209 2 1 1 1 1 * 0.000 -0.673 1.046 -1.810 0.034 D 208 206 3 209 2 0 0 0 0 * 0.000 IL 209 209 3 209 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 68 ] - - - - - - E 210 209 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SNORD31 ACC RF00089 DESC Small nucleolar RNA SNORD31 LENG 69 MAXL 145 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:15:07 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 26 EFFN 4.484619 CKSUM 3431122816 STATS LOCAL MSV -8.1786 0.71875 STATS LOCAL VITERBI -9.1619 0.71875 STATS LOCAL FORWARD -3.9957 0.71875 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.36406 1.48329 1.47763 1.24025 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 0.00000 * 1 0.97644 1.11061 2.42838 1.58079 1 a - - : 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 2 1.64200 1.80750 2.56671 0.56995 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 3 1.85333 0.95380 1.77746 1.24152 3 c - - < 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 4 0.72984 2.42583 1.28362 1.88008 4 a - - < 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 5 1.60473 0.81543 1.96860 1.52806 5 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 6 1.78931 0.81233 2.65221 1.14379 6 c - - _ 1.38629 1.38629 1.38629 1.38629 0.14931 4.40770 2.06739 1.46634 0.26236 1.09861 0.40547 7 0.39641 2.15416 2.57036 2.00423 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.11631 4.28629 2.34292 1.46634 0.26236 0.76416 0.62684 8 1.52027 2.25425 0.62911 1.94261 8 G - - _ 1.38629 1.38629 1.38629 1.38629 0.15431 2.04792 4.26944 0.20435 1.68837 0.15908 1.91685 9 2.66137 2.66922 2.82631 0.22113 10 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 10 3.47860 4.44226 0.06303 3.99186 11 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 11 0.15108 2.96491 3.16743 3.06727 12 A - - _ 1.38629 1.38629 1.38629 1.38629 0.05396 4.40770 3.21025 1.46634 0.26236 1.09861 0.40547 12 3.33662 3.18437 3.87452 0.10284 13 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02539 4.37913 4.37913 1.46634 0.26236 1.66991 0.20858 13 3.43238 4.39170 0.06619 3.94469 14 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02539 4.37913 4.37913 1.46634 0.26236 1.66991 0.20858 14 0.06976 3.99317 3.65237 3.77158 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.06487 4.37913 2.99035 1.46634 0.26236 0.47245 0.97676 15 1.39669 2.02043 0.98865 1.39469 16 g - - _ 1.38629 1.38629 1.38629 1.38629 0.08850 4.37034 2.63033 1.46634 0.26236 1.79342 0.18199 16 1.54353 1.56407 2.42314 0.71652 17 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02726 4.30910 4.30910 1.46634 0.26236 0.20676 1.67779 17 2.05361 1.85006 2.57546 0.44882 18 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 18 1.64413 1.34281 1.36425 1.23740 19 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 19 0.79821 1.87711 1.69766 1.54308 20 a - - _ 1.38629 1.38629 1.38629 1.38629 0.04157 4.40770 3.55667 1.46634 0.26236 1.09861 0.40547 20 0.74502 2.23589 1.98211 1.27082 21 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02508 4.39122 4.39122 1.46634 0.26236 0.61732 0.77520 21 1.99413 2.56200 2.98475 0.30630 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.18356 1.86103 4.40770 0.43655 1.03920 1.09861 0.40547 22 0.13468 3.52699 2.81096 3.31154 25 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 23 3.21358 0.18050 3.80242 2.27677 26 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 24 3.10356 0.21033 3.70534 2.11856 27 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 25 2.35044 3.69855 0.16973 3.32371 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 26 3.78963 0.08072 4.31800 3.17913 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 27 3.78963 0.08072 4.31800 3.17913 30 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 28 3.78963 0.08072 4.31800 3.17913 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05412 4.40770 3.20644 1.46634 0.26236 1.09861 0.40547 29 3.73363 0.08518 4.26829 3.12947 32 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02540 4.37898 4.37898 1.46634 0.26236 0.47102 0.97913 30 0.14947 3.31251 3.22124 2.77243 33 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 31 2.97303 3.75078 0.13619 2.94368 34 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 32 2.65118 2.66319 2.80098 0.22445 35 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 33 3.78963 0.08072 4.31800 3.17913 36 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 34 3.38609 3.22674 3.92494 0.09791 37 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 35 3.47860 4.44226 0.06303 3.99186 38 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 36 0.06621 4.04370 3.69949 3.82609 39 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 37 1.89280 2.38982 2.37388 0.40859 40 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 38 1.36561 1.14727 2.40418 1.08787 41 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 39 0.75227 2.08287 1.80858 1.42609 42 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 40 1.39830 0.80294 2.46921 1.51267 43 c - - _ 1.38629 1.38629 1.38629 1.38629 0.24675 1.57755 4.40770 0.19616 1.72531 1.09861 0.40547 41 2.12489 1.83627 2.15370 0.50238 46 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 42 1.53470 2.32701 0.53155 2.31062 47 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 43 3.38609 3.22674 3.92494 0.09791 48 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 44 3.47860 4.44226 0.06303 3.99186 49 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 45 0.30414 2.34665 2.47843 2.49282 50 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 46 2.41563 0.31726 2.60266 2.22127 51 C - - _ 1.38629 1.38629 1.38629 1.38629 0.05208 4.40770 3.25546 1.46634 0.26236 1.09861 0.40547 47 2.23173 2.62158 3.09673 0.25519 52 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02534 4.38097 4.38097 1.46634 0.26236 0.48972 0.94881 48 3.47860 4.44226 0.06303 3.99186 53 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 49 0.06621 4.04370 3.69949 3.82609 54 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 50 0.73403 2.31514 2.42553 1.10008 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 51 0.71993 2.25745 2.11932 1.24312 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.07351 2.83556 4.40770 0.37349 1.16579 1.09861 0.40547 52 2.19763 2.65422 0.28410 2.71972 58 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 53 2.30766 3.66904 0.17678 3.29573 59 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 54 2.57368 2.61930 2.61099 0.25176 60 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 55 0.30851 2.77243 2.80395 1.94928 61 A - - _ 1.38629 1.38629 1.38629 1.38629 0.12806 4.40770 2.22550 1.46634 0.26236 1.09861 0.40547 56 1.97287 1.85225 2.70440 0.45075 62 U - - _ 1.38629 1.38629 1.38629 1.38629 0.27471 2.55468 1.81714 0.31670 1.30397 0.20342 1.69247 57 1.51715 1.42888 2.12887 0.86248 64 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02856 4.26298 4.26298 1.46634 0.26236 0.15345 1.95012 58 2.46348 1.42385 3.01237 0.47016 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 59 2.21419 2.33578 3.00003 0.29540 66 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 60 3.78963 0.08072 4.31800 3.17913 67 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 61 3.38609 3.22674 3.92494 0.09791 68 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 62 3.47860 4.44226 0.06303 3.99186 69 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 63 0.06621 4.04370 3.69949 3.82609 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.17753 4.40770 1.89390 1.46634 0.26236 1.09861 0.40547 64 1.42965 2.14304 0.89063 1.45710 71 g - - _ 1.38629 1.38629 1.38629 1.38629 0.06632 4.25885 2.99518 1.46634 0.26236 1.29828 0.31883 65 1.88331 0.64003 2.69508 1.37398 72 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02853 4.26421 4.26421 1.46634 0.26236 0.15448 1.94391 66 2.02377 1.53015 2.24108 0.60698 73 U - - > 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 67 1.56239 2.09868 0.77661 1.57125 74 g - - > 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 68 1.28373 1.93086 1.87564 0.85633 75 u - - : 1.38629 1.38629 1.38629 1.38629 0.02467 4.40770 4.40770 1.46634 0.26236 1.09861 0.40547 69 1.42370 1.90104 0.97765 1.45427 76 g - - : 1.38629 1.38629 1.38629 1.38629 0.01241 4.39544 * 1.46634 0.26236 0.00000 * //