INFERNAL1/a [1.1.4 | Dec 2020] NAME SNORD29 ACC RF00070 DESC Small nucleolar RNA SNORD29 STATES 199 NODES 64 CLEN 65 W 166 ALPH RNA RF no CONS yes MAP yes DATE Thu Feb 20 18:13:58 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM PBEGIN 0.05 PEND 0.05 WBETA 1e-07 QDBBETA1 1e-07 QDBBETA2 1e-15 N2OMEGA 1.52588e-05 N3OMEGA 1.52588e-05 ELSELF -0.08926734 NSEQ 10 EFFN 3.549805 CKSUM 715332518 NULL 0.000 0.000 0.000 0.000 GA 48.00 TC 49.10 NC 47.70 EFP7GF -10.0127 0.71889 ECMLC 0.64247 -6.03062 2.79574 1600000 348282 0.003445 ECMGC 0.38857 -17.19948 -2.76521 1600000 109123 0.003666 ECMLI 0.60287 -4.78751 4.16295 1600000 264626 0.004535 ECMGI 0.43388 -11.95055 0.37462 1600000 84044 0.004759 CM [ ROOT 0 ] - - - - - - S 0 -1 0 1 4 1 1 166 284 -7.494 -7.701 -0.036 -6.115 IL 1 1 2 1 4 1 26 168 287 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 2 2 3 2 3 1 25 168 286 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 1 ] 2 - U - - - ML 3 2 3 5 3 1 25 166 285 -8.839 -0.013 -7.157 -1.280 -0.038 -2.063 1.248 D 4 2 3 5 3 0 20 165 283 -5.620 -0.734 -1.403 IL 5 5 3 5 3 1 24 167 285 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 2 ] - 93 - a - - MR 6 5 3 8 3 1 24 166 284 -8.839 -0.013 -7.157 0.610 0.563 -1.526 -0.623 D 7 5 3 8 3 0 18 163 282 -6.390 -1.568 -0.620 IR 8 8 3 8 3 1 23 166 284 -1.925 -0.554 -4.164 0.000 0.000 0.000 0.000 [ MATR 3 ] - 92 - u - - MR 9 8 3 11 5 1 24 165 283 -7.551 -0.028 -7.366 -7.578 -8.470 0.028 -1.011 -0.151 0.663 D 10 8 3 11 5 0 17 162 281 -5.352 -0.707 -2.978 -4.409 -2.404 IR 11 11 3 11 5 1 21 164 283 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 4 ] 3 91 u a - - MP 12 11 3 16 6 2 23 164 282 -9.341 -9.280 -0.018 -8.057 -8.336 -8.731 -3.581 -3.223 -3.631 0.447 -3.076 -4.520 1.264 -3.520 -3.577 0.653 -4.086 0.728 2.908 -3.900 -0.757 -2.506 ML 13 11 3 16 6 1 18 162 280 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 14 11 3 16 6 1 17 161 279 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 15 11 3 16 6 0 13 158 276 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 16 16 5 16 6 1 20 163 281 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 17 17 6 17 5 1 20 163 281 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 5 ] 4 90 G C - - MP 18 17 6 22 6 2 21 162 280 -9.341 -9.280 -0.018 -8.057 -8.336 -8.731 -4.160 -2.952 -4.092 0.585 -4.330 -4.544 0.264 -4.399 -4.152 3.286 -4.491 -0.634 0.950 -3.993 -1.761 -3.013 ML 19 17 6 22 6 1 17 160 278 -6.250 -6.596 -1.310 -1.005 -6.446 -3.975 0.368 -0.385 -0.191 0.094 MR 20 17 6 22 6 1 16 159 277 -6.988 -5.717 -1.625 -5.695 -0.829 -3.908 0.368 -0.385 -0.191 0.094 D 21 17 6 22 6 0 13 157 275 -9.049 -7.747 -3.544 -4.226 -4.244 -0.319 IL 22 22 5 22 6 1 19 161 279 -2.579 -2.842 -0.760 -4.497 -5.274 -4.934 0.000 0.000 0.000 0.000 IR 23 23 6 23 5 1 19 161 279 -2.408 -0.496 -5.920 -4.087 -5.193 0.000 0.000 0.000 0.000 [ MATP 6 ] 5 89 C G - - MP 24 23 6 28 4 2 20 160 278 -7.494 -7.701 -0.036 -6.115 -5.695 -5.697 -5.177 -1.866 -3.693 -5.437 3.792 -4.620 -5.290 -1.744 -5.402 -3.688 -0.326 -5.683 -1.453 -4.101 ML 25 23 6 28 4 1 16 159 277 -3.758 -3.940 -0.507 -2.670 0.368 -0.385 -0.191 0.094 MR 26 23 6 28 4 1 14 157 276 -4.809 -3.838 -1.706 -0.766 0.368 -0.385 -0.191 0.094 D 27 23 6 28 4 0 12 156 274 -4.568 -4.250 -2.265 -0.520 IL 28 28 5 28 4 1 18 159 278 -1.686 -2.369 -1.117 -4.855 0.000 0.000 0.000 0.000 IR 29 29 6 29 3 1 18 159 277 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 7 ] 6 - u - - - ML 30 29 6 32 3 1 18 158 276 -8.478 -0.014 -7.132 0.196 -0.994 -0.492 0.715 D 31 29 6 32 3 0 12 155 273 -6.174 -1.687 -0.566 IL 32 32 3 32 3 1 17 158 276 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 8 ] 7 - A - - - ML 33 32 3 35 3 1 17 157 275 -8.478 -0.014 -7.132 1.128 -1.921 0.223 -1.385 D 34 32 3 35 3 0 11 154 272 -6.174 -1.687 -0.566 IL 35 35 3 35 3 1 16 157 275 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 9 ] 8 - U - - - ML 36 35 3 38 3 1 16 156 274 -8.478 -0.014 -7.132 -2.463 -2.296 -3.231 1.811 D 37 35 3 38 3 0 10 153 271 -6.174 -1.687 -0.566 IL 38 38 3 38 3 1 15 156 274 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 10 ] 9 - G - - - ML 39 38 3 41 3 1 16 155 273 -8.478 -0.014 -7.132 -2.616 -3.968 1.877 -3.342 D 40 38 3 41 3 0 9 152 270 -6.174 -1.687 -0.566 IL 41 41 3 41 3 1 14 155 273 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 11 ] 10 - A - - - ML 42 41 3 44 3 1 15 154 272 -8.478 -0.014 -7.132 1.869 -3.401 -2.937 -3.049 D 43 41 3 44 3 0 8 151 269 -6.174 -1.687 -0.566 IL 44 44 3 44 3 1 14 154 272 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 12 ] 11 - U - - - ML 45 44 3 47 3 1 14 153 271 -8.478 -0.014 -7.132 -2.463 -2.296 -3.231 1.811 D 46 44 3 47 3 0 8 150 268 -6.174 -1.687 -0.566 IL 47 47 3 47 3 1 13 153 271 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 13 ] 12 - G - - - ML 48 47 3 50 3 1 13 152 270 -8.478 -0.014 -7.132 -2.616 -3.968 1.877 -3.342 D 49 47 3 50 3 0 7 149 267 -6.174 -1.687 -0.566 IL 50 50 3 50 3 1 12 152 270 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 14 ] 13 - A - - - ML 51 50 3 53 3 1 13 151 269 -8.478 -0.014 -7.132 1.869 -3.401 -2.937 -3.049 D 52 50 3 53 3 0 6 148 266 -6.174 -1.687 -0.566 IL 53 53 3 53 3 1 11 151 269 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 15 ] 14 - a - - - ML 54 53 3 56 3 1 12 150 268 -8.478 -0.014 -7.132 0.756 -1.144 -1.330 0.547 D 55 53 3 56 3 0 5 147 265 -6.174 -1.687 -0.566 IL 56 56 3 56 3 1 10 150 268 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 16 ] 15 - A - - - ML 57 56 3 59 3 1 11 149 267 -8.478 -0.014 -7.132 1.361 -1.565 -1.630 -0.377 D 58 56 3 59 3 0 4 145 263 -6.174 -1.687 -0.566 IL 59 59 3 59 3 1 10 149 267 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 17 ] 16 - C - - - ML 60 59 3 62 3 1 10 148 266 -1.742 -0.527 -7.132 -2.978 1.839 -3.785 -2.162 D 61 59 3 62 3 0 3 143 262 -6.174 -1.687 -0.566 IL 62 62 3 62 3 1 11 150 268 -0.460 -1.924 -6.704 0.000 0.000 0.000 0.000 [ MATL 18 ] 22 - U - - - ML 63 62 3 65 3 1 9 145 263 -8.478 -0.014 -7.132 -0.349 -1.315 -1.782 1.335 D 64 62 3 65 3 0 3 142 261 -6.174 -1.687 -0.566 IL 65 65 3 65 3 1 8 145 264 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 19 ] 23 - A - - - ML 66 65 3 68 3 1 9 144 262 -8.478 -0.014 -7.132 1.869 -3.401 -2.937 -3.049 D 67 65 3 68 3 0 2 141 260 -6.174 -1.687 -0.566 IL 68 68 3 68 3 1 7 144 263 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 20 ] 24 - a - - - ML 69 68 3 71 3 1 8 143 261 -8.478 -0.014 -7.132 0.853 0.280 -1.482 -0.685 D 70 68 3 71 3 0 1 140 259 -6.174 -1.687 -0.566 IL 71 71 3 71 3 1 6 143 262 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 21 ] 25 - C - - - ML 72 71 3 74 3 1 7 142 260 -8.478 -0.014 -7.132 -1.368 1.167 -2.242 0.210 D 73 71 3 74 3 0 0 139 258 -6.174 -1.687 -0.566 IL 74 74 3 74 3 1 5 142 261 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 22 ] 26 - u - - - ML 75 74 3 77 3 1 7 141 259 -8.478 -0.014 -7.132 -1.166 0.513 -1.986 0.907 D 76 74 3 77 3 0 0 138 257 -6.174 -1.687 -0.566 IL 77 77 3 77 3 1 5 141 260 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 23 ] 27 - A - - - ML 78 77 3 80 3 1 6 140 258 -8.478 -0.014 -7.132 1.869 -3.401 -2.937 -3.049 D 79 77 3 80 3 0 0 137 256 -6.174 -1.687 -0.566 IL 80 80 3 80 3 1 4 140 259 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 24 ] 28 - G - - - ML 81 80 3 83 3 1 5 139 257 -8.478 -0.014 -7.132 -2.616 -3.968 1.877 -3.342 D 82 80 3 83 3 0 0 136 255 -6.174 -1.687 -0.566 IL 83 83 3 83 3 1 3 139 258 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 25 ] 29 - C - - - ML 84 83 3 86 3 1 5 138 256 -8.478 -0.014 -7.132 -2.978 1.839 -3.785 -2.162 D 85 83 3 86 3 0 0 135 254 -6.174 -1.687 -0.566 IL 86 86 3 86 3 1 3 138 257 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 26 ] 30 - U - - - ML 87 86 3 89 3 1 4 137 255 -8.478 -0.014 -7.132 -2.463 -2.296 -3.231 1.811 D 88 86 3 89 3 0 0 134 253 -6.174 -1.687 -0.566 IL 89 89 3 89 3 1 2 137 256 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 27 ] 31 - C - - - ML 90 89 3 92 3 1 4 136 254 -8.478 -0.014 -7.132 -2.978 1.839 -3.785 -2.162 D 91 89 3 92 3 0 0 133 252 -6.174 -1.687 -0.566 IL 92 92 3 92 3 1 2 136 255 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 28 ] 32 - A - - - ML 93 92 3 95 3 1 3 135 253 -8.478 -0.014 -7.132 1.869 -3.401 -2.937 -3.049 D 94 92 3 95 3 0 0 132 251 -6.174 -1.687 -0.566 IL 95 95 3 95 3 1 1 135 254 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 29 ] 33 - c - - - ML 96 95 3 98 3 1 3 134 252 -8.478 -0.014 -7.132 -1.181 0.766 -2.022 0.689 D 97 95 3 98 3 0 0 131 250 -6.174 -1.687 -0.566 IL 98 98 3 98 3 1 1 134 253 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 30 ] 34 - U - - - ML 99 98 3 101 3 1 2 133 251 -8.478 -0.014 -7.132 -2.463 -2.296 -3.231 1.811 D 100 98 3 101 3 0 0 130 249 -6.174 -1.687 -0.566 IL 101 101 3 101 3 1 1 133 252 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 31 ] 35 - a - - - ML 102 101 3 104 3 1 2 132 250 -8.478 -0.014 -7.132 0.985 -1.229 -1.371 0.273 D 103 101 3 104 3 0 0 129 247 -6.174 -1.687 -0.566 IL 104 104 3 104 3 1 1 132 251 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 32 ] 36 - U - - - ML 105 104 3 107 3 1 2 131 249 -8.478 -0.014 -7.132 -2.463 -2.296 -3.231 1.811 D 106 104 3 107 3 0 0 128 246 -6.174 -1.687 -0.566 IL 107 107 3 107 3 1 1 131 250 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 33 ] 37 - G - - - ML 108 107 3 110 3 1 1 130 248 -8.478 -0.014 -7.132 -2.616 -3.968 1.877 -3.342 D 109 107 3 110 3 0 0 127 245 -6.174 -1.687 -0.566 IL 110 110 3 110 3 1 1 130 249 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 34 ] 38 - A - - - ML 111 110 3 113 3 1 1 129 247 -1.742 -0.527 -7.132 1.869 -3.401 -2.937 -3.049 D 112 110 3 113 3 0 0 125 243 -6.174 -1.687 -0.566 IL 113 113 3 113 3 1 1 131 249 -0.460 -1.924 -6.704 0.000 0.000 0.000 0.000 [ MATL 35 ] 44 - c - - - ML 114 113 3 116 3 1 1 126 245 -8.478 -0.014 -7.132 -0.128 0.830 -1.580 -0.040 D 115 113 3 116 3 0 0 124 242 -6.174 -1.687 -0.566 IL 116 116 3 116 3 1 1 127 245 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 36 ] 45 - c - - - ML 117 116 3 119 3 1 1 125 244 -8.478 -0.014 -7.132 -1.180 0.759 -2.020 0.696 D 118 116 3 119 3 0 0 123 241 -6.174 -1.687 -0.566 IL 119 119 3 119 3 1 1 126 244 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 37 ] 46 - a - - - ML 120 119 3 122 3 1 1 124 243 -8.478 -0.014 -7.132 0.420 0.198 -0.386 -0.416 D 121 119 3 122 3 0 0 122 240 -6.174 -1.687 -0.566 IL 122 122 3 122 3 1 1 125 243 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 38 ] 47 - u - - - ML 123 122 3 125 3 1 1 123 242 -8.478 -0.014 -7.132 0.502 -0.596 -1.221 0.578 D 124 122 3 125 3 0 0 121 239 -6.174 -1.687 -0.566 IL 125 125 3 125 3 1 1 124 242 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 39 ] 48 - u - - - ML 126 125 3 128 3 1 1 122 241 -8.478 -0.014 -7.132 0.039 -0.615 -0.617 0.738 D 127 125 3 128 3 0 0 120 238 -6.174 -1.687 -0.566 IL 128 128 3 128 3 1 1 123 241 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 40 ] 49 - u - - - ML 129 128 3 131 3 1 1 121 240 -8.478 -0.014 -7.132 -0.106 0.187 -1.378 0.630 D 130 128 3 131 3 0 0 119 237 -6.174 -1.687 -0.566 IL 131 131 3 131 3 1 1 122 240 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 41 ] 50 - G - - - ML 132 131 3 134 3 1 1 120 239 -8.478 -0.014 -7.132 0.258 -2.093 1.153 -1.535 D 133 131 3 134 3 0 0 118 236 -6.174 -1.687 -0.566 IL 134 134 3 134 3 1 1 121 239 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 42 ] 51 - U - - - ML 135 134 3 137 3 1 1 119 238 -8.478 -0.014 -7.132 -2.463 -2.296 -3.231 1.811 D 136 134 3 137 3 0 0 117 235 -6.174 -1.687 -0.566 IL 137 137 3 137 3 1 1 120 238 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 43 ] 52 - G - - - ML 138 137 3 140 3 1 1 118 237 -8.478 -0.014 -7.132 -2.616 -3.968 1.877 -3.342 D 139 137 3 140 3 0 0 116 234 -6.174 -1.687 -0.566 IL 140 140 3 140 3 1 1 119 237 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 44 ] 53 - a - - - ML 141 140 3 143 3 1 1 117 236 -8.478 -0.014 -7.132 0.926 -1.906 0.527 -1.351 D 142 140 3 143 3 0 0 115 233 -6.174 -1.687 -0.566 IL 143 143 3 143 3 1 1 118 236 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 45 ] 54 - a - - - ML 144 143 3 146 3 1 1 116 235 -8.478 -0.014 -7.132 0.926 -1.906 0.527 -1.351 D 145 143 3 146 3 0 0 113 232 -6.174 -1.687 -0.566 IL 146 146 3 146 3 1 1 117 235 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 46 ] 55 - a - - - ML 147 146 3 149 3 1 1 115 234 -8.478 -0.014 -7.132 0.756 -1.144 -1.330 0.547 D 148 146 3 149 3 0 0 112 230 -6.174 -1.687 -0.566 IL 149 149 3 149 3 1 1 116 234 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 47 ] 56 - a - - - ML 150 149 3 152 3 1 1 114 233 -8.478 -0.014 -7.132 0.756 -1.144 -1.330 0.547 D 151 149 3 152 3 0 0 111 229 -6.174 -1.687 -0.566 IL 152 152 3 152 3 1 1 115 233 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 48 ] 57 - G - - - ML 153 152 3 155 3 1 1 113 232 -1.742 -0.527 -7.132 -0.846 -1.129 1.250 -0.717 D 154 152 3 155 3 0 0 108 227 -6.174 -1.687 -0.566 IL 155 155 3 155 3 1 1 116 234 -0.385 -2.146 -6.926 0.000 0.000 0.000 0.000 [ MATL 49 ] 64 - A - - - ML 156 155 3 158 3 1 1 110 228 -8.478 -0.014 -7.132 1.067 -0.031 -1.501 -0.803 D 157 155 3 158 3 0 0 107 226 -6.174 -1.687 -0.566 IL 158 158 3 158 3 1 1 110 229 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 50 ] 65 - U - - - ML 159 158 3 161 3 1 1 109 227 -8.478 -0.014 -7.132 -1.414 -0.405 -2.180 1.405 D 160 158 3 161 3 0 0 106 225 -6.174 -1.687 -0.566 IL 161 161 3 161 3 1 1 109 228 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 51 ] 66 - a - - - ML 162 161 3 164 3 1 1 108 226 -8.478 -0.014 -7.132 0.985 -1.229 -1.371 0.273 D 163 161 3 164 3 0 0 105 223 -6.174 -1.687 -0.566 IL 164 164 3 164 3 1 1 108 227 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 52 ] 67 - U - - - ML 165 164 3 167 3 1 1 107 225 -8.478 -0.014 -7.132 -1.278 -1.454 -1.314 1.496 D 166 164 3 167 3 0 0 104 222 -6.174 -1.687 -0.566 IL 167 167 3 167 3 1 1 107 226 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 53 ] 68 - G - - - ML 168 167 3 170 3 1 1 106 224 -8.478 -0.014 -7.132 -2.616 -3.968 1.877 -3.342 D 169 167 3 170 3 0 0 103 221 -6.174 -1.687 -0.566 IL 170 170 3 170 3 1 1 106 225 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 54 ] 69 - A - - - ML 171 170 3 173 3 1 1 105 223 -8.478 -0.014 -7.132 1.869 -3.401 -2.937 -3.049 D 172 170 3 173 3 0 0 101 219 -6.174 -1.687 -0.566 IL 173 173 3 173 3 1 1 105 224 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 55 ] 70 - A - - - ML 174 173 3 176 3 1 1 104 222 -8.478 -0.014 -7.132 1.869 -3.401 -2.937 -3.049 D 175 173 3 176 3 0 0 99 217 -6.174 -1.687 -0.566 IL 176 176 3 176 3 1 1 104 223 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 56 ] 71 - C - - - ML 177 176 3 179 3 1 1 103 221 -8.478 -0.014 -7.132 -2.978 1.839 -3.785 -2.162 D 178 176 3 179 3 0 0 95 214 -6.174 -1.687 -0.566 IL 179 179 3 179 3 1 1 103 221 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 57 ] 72 - U - - - ML 180 179 3 182 3 1 1 102 220 -1.742 -0.527 -7.132 -0.349 -1.315 -1.782 1.335 D 181 179 3 182 3 0 0 81 200 -6.174 -1.687 -0.566 IL 182 182 3 182 3 1 1 109 227 -0.225 -2.845 -7.625 0.000 0.000 0.000 0.000 [ MATL 58 ] 84 - C - - - ML 183 182 3 185 3 1 1 17 36 -8.478 -0.014 -7.132 -1.666 1.424 -2.549 -0.267 D 184 182 3 185 3 0 0 17 35 -6.174 -1.687 -0.566 IL 185 185 3 185 3 1 1 21 39 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 59 ] 85 - C - - - ML 186 185 3 188 3 1 1 16 34 -8.478 -0.014 -7.132 -2.978 1.839 -3.785 -2.162 D 187 185 3 188 3 0 0 16 34 -6.174 -1.687 -0.566 IL 188 188 3 188 3 1 1 20 38 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 60 ] 86 - U - - - ML 189 188 3 191 3 1 1 14 33 -8.478 -0.014 -7.132 -2.463 -2.296 -3.231 1.811 D 190 188 3 191 3 0 0 15 33 -6.174 -1.687 -0.566 IL 191 191 3 191 3 1 1 19 37 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 61 ] 87 - G - - - ML 192 191 3 194 3 1 1 13 31 -8.478 -0.014 -7.132 -2.616 -3.968 1.877 -3.342 D 193 191 3 194 3 0 0 13 32 -6.174 -1.687 -0.566 IL 194 194 3 194 3 1 1 18 36 -1.442 -0.798 -4.142 0.000 0.000 0.000 0.000 [ MATL 62 ] 88 - A - - - ML 195 194 3 197 2 1 1 1 1 * 0.000 1.869 -3.401 -2.937 -3.049 D 196 194 3 197 2 0 0 0 0 * 0.000 IL 197 197 3 197 2 1 1 13 28 -1.823 -0.479 0.000 0.000 0.000 0.000 [ END 63 ] - - - - - - E 198 197 3 -1 0 0 0 0 0 // HMMER3/f [3.3.2 | Nov 2020] NAME SNORD29 ACC RF00070 DESC Small nucleolar RNA SNORD29 LENG 65 MAXL 224 ALPH RNA RF no MM no CONS yes CS yes MAP yes DATE Thu Feb 20 18:13:58 2014 COM [1] /nfs/production/xfam/rfam/software/bin/cmbuild -F CM SEED COM [2] /nfs/production/xfam/rfam/software/bin/cmcalibrate --mpi CM NSEQ 10 EFFN 3.891602 CKSUM 715332518 STATS LOCAL MSV -7.7340 0.71889 STATS LOCAL VITERBI -9.1334 0.71889 STATS LOCAL FORWARD -3.7584 0.71889 HMM A C G U m->m m->i m->d i->m i->i d->m d->d COMPO 1.24282 1.52637 1.52623 1.28463 1.38629 1.38629 1.38629 1.38629 0.41157 1.13008 4.24147 0.08681 2.48708 0.00000 * 1 2.34205 1.40926 2.88750 0.50446 2 U - - : 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 2 2.32580 1.86048 1.57088 0.61835 3 U - - < 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 3 2.24533 2.54143 0.40724 1.89797 4 G - - < 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 4 3.86432 0.12385 3.70954 2.64476 5 C - - < 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 5 1.25044 2.10352 1.72922 0.88147 6 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 6 0.58807 2.79341 1.22024 2.42782 7 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 7 3.20765 3.07457 3.74291 0.11692 8 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 8 3.31030 4.25802 0.07538 3.81866 9 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 9 0.08002 3.86130 3.53008 3.62833 10 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 10 3.20765 3.07457 3.74291 0.11692 11 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 11 3.31030 4.25802 0.07538 3.81866 12 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 12 0.08002 3.86130 3.53008 3.62833 13 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 13 0.84985 2.21840 2.34623 0.99966 14 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 14 0.42478 2.52329 2.57264 1.66305 15 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 15 3.58562 0.09816 4.13472 3.00044 16 C - - _ 1.38629 1.38629 1.38629 1.38629 0.41157 1.13008 4.24147 1.60580 0.22405 1.09861 0.40547 16 1.64582 2.35355 2.68294 0.44044 22 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 17 0.08002 3.86130 3.53008 3.62833 23 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 18 0.77975 1.17631 2.46626 1.90943 24 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 19 2.40425 0.55556 3.01890 1.24805 25 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 20 2.25729 1.01408 2.83099 0.74723 26 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 21 0.08002 3.86130 3.53008 3.62833 27 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 22 3.31030 4.25802 0.07538 3.81866 28 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 23 3.58562 0.09816 4.13472 3.00044 29 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 24 3.20765 3.07457 3.74291 0.11692 30 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 25 3.58562 0.09816 4.13472 3.00044 31 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 26 0.08002 3.86130 3.53008 3.62833 32 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 27 2.26785 0.83516 2.85795 0.90319 33 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 28 3.20765 3.07457 3.74291 0.11692 34 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 29 0.68797 2.27965 2.37855 1.19601 35 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 30 3.20765 3.07457 3.74291 0.11692 36 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 31 3.31030 4.25802 0.07538 3.81866 37 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 32 0.08002 3.86130 3.53008 3.62833 38 A - - _ 1.38629 1.38629 1.38629 1.38629 0.41157 1.13008 4.24147 1.60580 0.22405 1.09861 0.40547 33 1.48679 0.78843 2.53003 1.42841 44 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 34 2.26693 0.84013 2.85656 0.89833 45 c - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 35 1.09159 1.23444 1.65424 1.70330 46 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 36 1.03008 1.81155 2.26031 0.98002 47 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 37 1.36173 1.82532 1.81674 0.86735 48 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 38 1.46804 1.24416 2.37601 0.94541 49 u - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 39 1.20804 2.90859 0.56767 2.52796 50 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 40 3.20765 3.07457 3.74291 0.11692 51 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 41 3.31030 4.25802 0.07538 3.81866 52 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 42 0.73022 2.78146 1.00579 2.40248 53 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 43 0.73022 2.78146 1.00579 2.40248 54 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 44 0.84985 2.21840 2.34623 0.99966 55 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 45 0.84985 2.21840 2.34623 0.99966 56 a - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 46 2.02400 2.19070 0.49521 1.92008 57 G - - _ 1.38629 1.38629 1.38629 1.38629 0.41157 1.13008 4.24147 1.78417 0.18385 1.09861 0.40547 47 0.62827 1.39778 2.48179 1.99697 64 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 48 2.44070 1.67510 2.97333 0.39382 65 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 49 0.68797 2.27965 2.37855 1.19601 66 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 50 2.34548 2.45763 2.32531 0.32738 67 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 51 3.31030 4.25802 0.07538 3.81866 68 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 52 0.08002 3.86130 3.53008 3.62833 69 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 53 0.08002 3.86130 3.53008 3.62833 70 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 54 3.58562 0.09816 4.13472 3.00044 71 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 55 1.64582 2.35355 2.68294 0.44044 72 U - - _ 1.38629 1.38629 1.38629 1.38629 0.41157 1.13008 4.24147 2.32367 0.10305 1.09861 0.40547 56 2.62314 0.37821 3.24217 1.59328 84 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 57 3.58562 0.09816 4.13472 3.00044 85 C - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 58 3.20765 3.07457 3.74291 0.11692 86 U - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 59 3.31030 4.25802 0.07538 3.81866 87 G - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 60 0.08002 3.86130 3.53008 3.62833 88 A - - _ 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 61 2.92938 3.87737 0.10586 3.63770 89 G - - > 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 62 2.02790 0.45371 2.36732 1.97048 90 C - - > 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 63 0.67775 2.26527 1.69440 1.58606 91 A - - > 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 64 1.37200 2.11546 1.48460 0.91821 92 u - - : 1.38629 1.38629 1.38629 1.38629 0.02920 4.24147 4.24147 1.46634 0.26236 1.09861 0.40547 65 0.95331 0.97517 2.49802 1.86330 93 a - - : 1.38629 1.38629 1.38629 1.38629 0.01470 4.22698 * 1.46634 0.26236 0.00000 * //