SNORD41 clan

The SNORD41 clan contains the RNA families SNORD57, SNORD41 and snR51. Researchers at the human snoRNA database (snoRNABase) have established that the following human and S. cerevisiae snoRNAs target modifications on orthologous positions of the ribosome: U57 and snR51, SNORD41 and snR51 [1].

This clan contains 3 families and the total number of sequence regions in the clan is 338.

Literature references

1. Lestrade L, Weber MJ;, Nucleic Acids Res. 2006;34:D158-D162.: snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. 16381836

Members

This clan contains the following 3 member families:

SNORD57 SNORD41 snR51

External database links

External sites:

1: http://www-snorna.biotoul.fr/human_yeast/

This tool allows you to view the secondary structure images of two clan members side-by-side. Choose the family structures using the two drop-down menus below.

The table below shows the number of occurrences of each family throughout the sequence database. In brackets beside each number is the percentage of the total number of sequence hits for the clan that are represented by this family. The rightmost column provides a link to the alignments tab for each family.

Rfam family	Num. regions	Alignment
snR51 (RF01214)	127 (37.6%)	View
SNORD41 (RF00588)	111 (32.8%)	View
SNORD57 (RF00274)	100 (29.6%)	View